KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:10:30 2014 Check: 00 .. Name: bmy_20788T0/1-275 Len: 512 Check: 6767 Weight: 1.00 Name: ENSTTRP00000012164/1-507 Len: 512 Check: 6361 Weight: 1.00 Name: ENSP00000376372/1-506 Len: 512 Check: 9446 Weight: 1.00 Name: ENSBTAP00000020166/1-491 Len: 512 Check: 2815 Weight: 1.00 // 1 50 bmy_20788T0/1-275 ---------- ---------- ---MNAKAGP PEVRGTLALL CLSAVTLTYV ENSTTRP00000012164/1-507 VRMPMQTTLV APAWPRSTPA RSPRDRGARP LQVRGALALL CLSAVTLTYV ENSP00000376372/1-506 MLKPLWKAAV APTWPCSMPP RRPWDREAGT LQVLGALAVL WLGSVALICL ENSBTAP00000020166/1-491 ----LCCTRV APAWPGSTLP CGPRERAVST LQVRGMLVLL CLGAVTLTCL 51 100 bmy_20788T0/1-275 LWQVLCSSTW RHVRPEEGPT ASWXLGSSLA WAPLAGEAW- RRQQNDSCRL ENSTTRP00000012164/1-507 LWQALSPSTW GHVHPEEGPT TSQGLGSSLA WAPLGGEAR- RHQQNDSCRL ENSP00000376372/1-506 LWQVPRPPTW GQVQPKDVP- RSWEHGSSPA WEPLEAEAR- --QQRDSCQL ENSBTAP00000020166/1-491 LGLGSSPSAW SQGCPEEGPA RPGGLGSRVD WDPRGREARR RHQRKDSCRL 101 150 bmy_20788T0/1-275 VLVESIPQDL PPAAGSPSAQ PLAQAWLQLL DAARESVHVA SFYWSLTGSD ENSTTRP00000012164/1-507 VLVESIPQDL PPAPGSPSAQ PLAQAWLQLL DAARERVHVA SFYWSLTGPD ENSP00000376372/1-506 VLVESIPQDL PSAAGSPSAQ PLGQAWLQLL DTAQESVHVA SYYWSLTGPD ENSBTAP00000020166/1-491 VLVESIPQDL RSVAGSPAAQ PLAQAWMQLL DAARESVHVA SFYWSLTGPD 151 200 bmy_20788T0/1-275 TGVNDSSSQL GEALLQKLQQ LLDRNVSLAV ATSTPTLVRN STDLQVLVAR ENSTTRP00000012164/1-507 TGVNDSSSRL GEALLQKLQQ LLDRNVSLAV ATSTPTLVQN STDLQVLVAR ENSP00000376372/1-506 IGVNDSSSQL GEALLQKLQQ LLGRNISLAV ATSSPTLART STDLQVLAAR ENSBTAP00000020166/1-491 IGVNDSSSQP GEALLQKLQQ LLDRNVSLAV ATSTPTPAKN STDLQVLESR 201 250 bmy_20788T0/1-275 ALP------- ---------- ---------- --------RS L-QVKELGAI ENSTTRP00000012164/1-507 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVKELGAI ENSP00000376372/1-506 GAHVRQVPMG RLTRGVLHSK FWVVDGRHIY MGSANMDWRS LTQVKELGAV ENSBTAP00000020166/1-491 GAQVRHVPMG KLTGGVLHSK FWVVDGRHIY VGSANMDWRS LTQVKELGAV 251 300 bmy_20788T0/1-275 IYNCSRLAQD LEKTFQTYWV LGVPKAVLPK PWPRNFSSHI NCFQPLRDYF ENSTTRP00000012164/1-507 IYNCSCLAQD LEKTFRTYWV LGVPKAVLPR PWPRNFSSHI NRFQPLRDYF ENSP00000376372/1-506 IYNCSHLAQD LEKTFQTYWV LGVPKAVLPK TWPQNFSSHF NRFQPFHGLF ENSBTAP00000020166/1-491 IYNCSRLAQD LEKTFQTYWV LGTPRAVLPK RWPQNFSSHI NRFQPLRDHF 301 350 bmy_20788T0/1-275 DGVPTTAYFS ---------- ---------- ---------- ---------- ENSTTRP00000012164/1-507 DGVPTTAYFS ASLPALCPSG RTCDLDALLS LIGGAQEFFY AFVMGYFPTT ENSP00000376372/1-506 DGVPTTAYFS ASPPALCPQG RTRDLEALLA VMGSAQEFIY ASVMEYFPTT ENSBTAP00000020166/1-491 DGVPTTVYFS ASPPSLCPHG RTRDLDALLA VMGAAREFLY ASVMEYFPTT 351 400 bmy_20788T0/1-275 ----PLX--- ---------- ------QRRV ---------- ---------- ENSTTRP00000012164/1-507 RFIPPLRWPL DTADRVGAVS RGG---HRRA VSCWLNTDPS MFPDVRSH-Q ENSP00000376372/1-506 RFSHPPRYWP VLDNALRAAA FGKGVRVRLL VGCGLNTDPT MFPYLRSL-Q ENSBTAP00000020166/1-491 RFRHPARW-- --------AG WG----LSCL LAC---RDPV EAGWQGSAGP 401 450 bmy_20788T0/1-275 ---------- ---------- ---------- ---------- ---------W ENSTTRP00000012164/1-507 AISNPAAKVI ADVKVFIVPV RNNSNIPFSR VNHSKFMVTE KAAYIGTSNW ENSP00000376372/1-506 ALSNPAANVS VDVKVFIVPV GNHSNIPFSR VNHSKFMVTE KAAYIGTSNW ENSBTAP00000020166/1-491 RLSNPAANVS MDVKVFIVPV GNHSNIPFSR VNHSKFMVTE KAAYIGTSNW 451 500 bmy_20788T0/1-275 TDKRMSEPP- --LTLLSRAT ---------- ---------- ---------- ENSTTRP00000012164/1-507 SEDYFSSTSG VGLVVSQRAS SAQPGAATVQ GQMRQLFERD WSSRYAVGLD ENSP00000376372/1-506 SEDYFSSTAG VGLVVTQ-SP GAQPAGATVQ EQLRQLFERD WSSRYAVGLD ENSBTAP00000020166/1-491 SEDYFSSTSG VGLVVSQRAS GAQPGVSTVQ EQLRQLFERD WSSRYAVGLD 501 550 bmy_20788T0/1-275 ---------- -- ENSTTRP00000012164/1-507 GQAQGQDCVW QG ENSP00000376372/1-506 GQAPGQDCVW QG ENSBTAP00000020166/1-491 GQAQGQDCVW QG