KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:31 2014 Check: 00 .. Name: ENSP00000263093/1-690 Len: 691 Check: 4207 Weight: 1.00 Name: ENSTTRP00000001871/1-690 Len: 691 Check: 7040 Weight: 1.00 Name: ENSBTAP00000020170/1-690 Len: 691 Check: 4552 Weight: 1.00 Name: bmy_21433T0/1-690 Len: 691 Check: 8650 Weight: 1.00 Name: BACU005934/1-493 Len: 691 Check: 3768 Weight: 1.00 // 1 50 ENSP00000263093/1-690 MGVRQQLALL LLLLLLLWGL GQPVWPVAVA LTLRWLLGDP TCCVLLGLAM ENSTTRP00000001871/1-690 MGIWGRLAFL LLLLLLLRGL GQSSWPAAVA LALRWLLGDS ACCGLLVLAV ENSBTAP00000020170/1-690 LGLXRRLAFS LLLLLLLWGL GQSPWAAAAA PALRWLLGDP ACGLLLGLAV bmy_21433T0/1-690 MGIWGRLAFL LLLLLLLRGL GQSAWPAAVA LALRWLLGDS SCCVLLGLAV BACU005934/1-493 ---------- ---------- ---------- -------MAS QC-------- 51 100 ENSP00000263093/1-690 LARPWLGPWV PHGLSLAAAA LALTLLPARL PPGLRWLPAD VIFLAKILHL ENSTTRP00000001871/1-690 LAWPWLGPWM PHWLSLAAAA LTLALLPTHP PPGLCWLPAD LAYIFKVLRL ENSBTAP00000020170/1-690 LAGPWLGPWT PHWLSLAAAA LLLTLLPARP PPGLLWLPAD LAYTFLMLRL bmy_21433T0/1-690 LAWPWLGPWM PHWLSLAAAA LTLALLPTQP PPGLRWLPAD LAYVFKILRL BACU005934/1-493 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000263093/1-690 GLKIRGCLSR QPPDTFVDAF ERRARAQPGR ALLVWTGPGA GSVTFGELDA ENSTTRP00000001871/1-690 GLNIRARLSR QPPDTFVDSF ERRVRAQPGR AILVWTGPGS RSVTFGELDA ENSBTAP00000020170/1-690 GLRTWARLRR QPPDTFVDSF ERRARAQPGR TILVCTGPGG RAVTFQELDT bmy_21433T0/1-690 GLNIWARLSR QPPDTFVDSF ERRVRAQPGR AILVWTGPGS RSVTCGELDA BACU005934/1-493 ---------- --------QF EATLRVPPSH ---------- ---------- 151 200 ENSP00000263093/1-690 RACQ-AAWAL KAELGDPASL CAGEPTALLV LASQAVPALC MWLGLAKLGC ENSTTRP00000001871/1-690 RACR-AAWVM KAELGDATGP RAQEPTALLV LPSQTIPALG LWLGLAKLGC ENSBTAP00000020170/1-690 RACQ-AAWAL KAELAGVAGL RAREPTALLV LPSQMLPALS LWLGLAKLGC bmy_21433T0/1-690 RACR-AAWVM KAELGGATGP RAQEPTALLV LPSQTIPALG LWLGLAKLGC BACU005934/1-493 --CRHVAWAP RSKVSGA--- ---------- ---------- ---------- 201 250 ENSP00000263093/1-690 PTAWINPHGR GMPLAHSVLS SGARVLVVDP DLRESLEEIL PKLQAENIRC ENSTTRP00000001871/1-690 PVAWINPHGR GAPLVHSVLS SGARVLVVDP GLRENLEEVL PKLQAENIRC ENSBTAP00000020170/1-690 PVVWINPHGR GPPLVHAVLS SGARVLVVDP ELRANLEEVL PKLQAEKVHC bmy_21433T0/1-690 PVAWINPHGR GAPLVHSVLS SGARVLVVDP DLRENLEEVL PKLQAENIRC BACU005934/1-493 ---------- ---------- ---------- DLRKNLEEVL PKLQAENIRC 251 300 ENSP00000263093/1-690 FYLSHTSPTP GVGALGAALD AAPSHPVPAD LRAGITWRSP ALFIYTSGTT ENSTTRP00000001871/1-690 FYLSHSSPTP GVRALGAALD AAPSDPVPAD LRAEIKLRSP ALFIYTSGTT ENSBTAP00000020170/1-690 LYLGRSSPTP GVGALGAALA AAPSDPVPAD LRADIKLRSP ALFIYTSGTT bmy_21433T0/1-690 FYLSHSSPTP GVRALGAALD AAPSDPVPAD LRAEIKLRSP ALFIYTSGTT BACU005934/1-493 FYLSRSSPTP GVRALGAALD AAPSDPVPAD LRAEIKLRSP ALFIYTSGTT 301 350 ENSP00000263093/1-690 GLPKPAILTH ERVLQMSKML SLSGATADDV VYTVLPLYHV MGLVVGILGC ENSTTRP00000001871/1-690 GLPKPAILTY ERALQISGML TLCGVTADDV VYTVLPLYHT MGLVLGVLSC ENSBTAP00000020170/1-690 GLPKPAILTY ERVLQVAGML TLCGVTADDV VYTALPLYHT MGLVLGVLSC bmy_21433T0/1-690 GLPKPAILTY ERVLHISGML TLCGVTADDV VYTVLPLYHT MGLVLGVLSC BACU005934/1-493 GLPKPAILTY ERALQISGML TLCGVTADDV VYTVLPLYHT MGLVLGVLSC 351 400 ENSP00000263093/1-690 LDLGATCVLA PKFSTSCFWD DCRQHGVTVI LYVGELLRYL CNIPQQPEDR ENSTTRP00000001871/1-690 LELGVTCVLA PKFSASCFWD DCRQHGVTVI QYVGEVLRYL CNTPQXXXXX ENSBTAP00000020170/1-690 LDLGVTCVLA PKFSASGFWD DCRQHGVTVI QYVGEILRYL CNTPQRPEDR bmy_21433T0/1-690 LELGVTCVLA PKFSASCFWD DCRQHGVTVI QYVGEVLRYL CNTPQRPEDR BACU005934/1-493 LELGVTCVLA PKFSASCFWD DCRQHGVTVI QYVGEVLRYL CNTPQRPEDR 401 450 ENSP00000263093/1-690 THTVRLAMGN GLRADVWETF QQRFGPIRIW EVYGSTEGNM GLVNYVGRCG ENSTTRP00000001871/1-690 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020170/1-690 THKVRLAIGS GLRAEVWETF QRRFGPIRIW EMYGSTEGNV GFINYPGRCG bmy_21433T0/1-690 THKVRLAIGS GLRAEVWETF QQRFGPIRIW EVYGSTEGNG GFVNYPGRCG BACU005934/1-493 THKVRLAIGS GLRAEVWETF QQRFGPIRIW EVYGSTEGNG GFVNYPGRCG 451 500 ENSP00000263093/1-690 ALGKMSCLLR MLSPFELVQF DMEAAEPVRD NQGFCIPVGL GEPGLLLTKV ENSTTRP00000001871/1-690 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XEAGLLLTQV ENSBTAP00000020170/1-690 AQGKTSCFLR MLSPFELVQY SLETEEPLRD SQGLCIPARP GEAGLLLTQV bmy_21433T0/1-690 AQGKTSCFLR MLSPFELVQY SMETEEPVRD NWGLCIPARP GEAGLLLTQV BACU005934/1-493 AQGKISCFLR MLSPFELVQY STETEEPVRD SWGLCVPARP GEAGLLLTQV 501 550 ENSP00000263093/1-690 VSQQPFVGYR GPRELSERKL VRNVRQSGDV YYNTGDVLAM DREGFLYFRD ENSTTRP00000001871/1-690 LRHQPFLGYR GPREHTERKL VKNVRRPNDL YYNTGDVLAL DDEGFLYFRD ENSBTAP00000020170/1-690 LRHQPFLGYR GPRELSEKKL VKNVRRPNDL YYNTGDVLAM DHEGFLYFRD bmy_21433T0/1-690 LRHQPFLGYR GPREHTERKL VKNVRRPNDL YYNTGDVLAL DDEGFLYFRD BACU005934/1-493 LRHQPFLGYR GPREHTERKL VKNVRRPNDL YYNTGDVLAL DDEGFLYFRD 551 600 ENSP00000263093/1-690 RLGDTFRWKG ENVSTHEVEG VLSQVDFLQQ VNVYGVCVPG CEGKVGMAAV ENSTTRP00000001871/1-690 RLGDTFRWKG ENVSTREVEG VLSLVDFLQE VNVYGVPVPG CEGKVGMAAV ENSBTAP00000020170/1-690 RLGDTFRWKG ENVSTREVEG VLSVVDFLQE VNVYGVPVPG CEGKVGMAAV bmy_21433T0/1-690 RLGDTFRWKG ENVSTREVEG VLSLVDFLQE VNVYGVPVPG CEGKVGMAAV BACU005934/1-493 RLGDTFRWKG ENVSTREVEG VLSLVDFLQE VNVYGVPVPG CEGKVGMAAV 601 650 ENSP00000263093/1-690 QLAPGQTFDG EKLYQHVRAW LPAYATPHFI RIQDAMEVTS TFKLMKTRLV ENSTTRP00000001871/1-690 QLAPGQAFDG QRLYQHVRTW LPAYAAPHFI RIQDALEITS TFKLVKSRLV ENSBTAP00000020170/1-690 QLVPGQAFDG QRLYQHVRTS LPGYAAPHFI RIQDALEITG TFKLVKSRLV bmy_21433T0/1-690 QLAPGQAFDG QRLYQHVRTW LPAYAAPHFI RVQDALEITS TFKLVKSRLV BACU005934/1-493 QLAPGQAFDG QRLYQHVRTW LPAYAAPHFI RVQDALEITS TFKLVKSRLV 651 700 ENSP00000263093/1-690 REGFNVGIVV DPLFVLDNRA QSFRPLTAEM YQAVCEGTWR L ENSTTRP00000001871/1-690 REGFNVGIVA DPLYLLDNQT RAFRPLTPDI YRAVCEGAWR L ENSBTAP00000020170/1-690 REGFNVSVVA DPLFVLDNQA QAFRPLTPDI YRAVCEGAWR L bmy_21433T0/1-690 REGFNVGIVA DPLYLLDNRA RAFRPLTSDI YRAVCEGAWR L BACU005934/1-493 REGFNVGIVA DPLYLLDNRA RAFRPLTSDI YRAVCEGAWR L