KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:10:31 2014 Check: 00 .. Name: ENSTTRP00000009872/1-530 Len: 597 Check: 5657 Weight: 1.00 Name: ENSBTAP00000020180/1-531 Len: 597 Check: 3883 Weight: 1.00 Name: bmy_19640T0/1-555 Len: 597 Check: 8290 Weight: 1.00 Name: BACU011748/1-514 Len: 597 Check: 9210 Weight: 1.00 // 1 50 ENSTTRP00000009872/1-530 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020180/1-531 ---------- ---------- ---------- ---------- ---------- bmy_19640T0/1-555 GAKCKIKRPW AGRWPAPPSA GQRPPGLVVA RGSIRFPRRE PFKEAARRKR BACU011748/1-514 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009872/1-530 ---------- ------MDVG ADEFEQSLPL LQELVLGADF VGLDIEFT-L ENSBTAP00000020180/1-531 ---------- ------MDIG ADEFEQSLPL LQELVLGADF VGLDIEFTGL bmy_19640T0/1-555 VAARGRTGRS RPSCVAMDVG ADEFEQSLPL LQELVLGADF VGLDVEFTGL BACU011748/1-514 ---------- ------MDVG ADEFEQSLPL LQELVLGADF VGLDIEFTGL 101 150 ENSTTRP00000009872/1-530 RSNPSGPQQI SLFDLPSEWY LKTRQSVQQF TVCQIGLSMF SSIEGESNKY ENSBTAP00000020180/1-531 RSNLSGPQQI SLFDLPSEWY LKTRQSVQQF TICQIGLSVF SSIEGESNKY bmy_19640T0/1-555 RSNLSGPQQI SLFDLPSEWY LKTRQSVQQF TVCQIGLSVF SSIEGESNKY BACU011748/1-514 RSNLSGPQQI SLFDLPSEWY LKTRQSVQQF TICQIGLSVF SSIEGESNKY 151 200 ENSTTRP00000009872/1-530 EAHSCNFFLF PTTFGILDSE FSFQASSVQF LNEHGFDYNK FLKNGIPYMN ENSBTAP00000020180/1-531 VAHSCNFFLF PTTFGVLDSE FSFQASSVQF LNQYGFDYNK FLKNGIPYMN bmy_19640T0/1-555 VAHSCNFFLF PTTFGILDSE FSFQASSVQF LNQYGFDYNK FLKNGIPYMN BACU011748/1-514 VAHSCNFFLF PTTFGILDSE FSFQASSVQF LNQYGFDYNK FLKNGIPYMN 201 250 ENSTTRP00000009872/1-530 EEQEKKIKHS ILTGNWRVRS SLDKDQIKVV IDEVTRWLDL AEEGDWMTLP ENSBTAP00000020180/1-531 EEQEKKIKHN ILTGNWKVRS SLDKDQIKVV IDEVTRWLDL AEEGDWMTLP bmy_19640T0/1-555 EEQEKKIKHS ILTGNWRVRS SLDKDQIKVV IDEVTRWLDL AEEGDWMTLP BACU011748/1-514 EEQEKKIKHS ILTGNWRVRS SLDKDQIKAV IDEVTRWLVL AEEGDWTTLP 251 300 ENSTTRP00000009872/1-530 GITGFQAFEV QLVLRKALPD IWTVMRGQGV TVKKVSKRHR WYLENTSCDR ENSBTAP00000020180/1-531 GIAGFQAFEV QLVLRKALPD IWTVLRDQGV IVKKVSTQHR WYLETTSCDR bmy_19640T0/1-555 GITGFQAFEV QLVLRKALPD IWTVMRDEGV TVKKVSKQHR WYLENTSCDR BACU011748/1-514 GVTGFQAFEV QLVLRKALPD IWTVMKDEGV TVKKVSKQHR WYLENISCDR 301 350 ENSTTRP00000009872/1-530 ESCWQEKILL SARGFSVFFQ MLVKAQKPLV GHNMMMDLLH LHEKFFRPLP ENSBTAP00000020180/1-531 ESCWKEKILL SARGFSVFFQ MLVKARKPLV GHNMMMDLLH LHEKFFRPLP bmy_19640T0/1-555 ESCWKEKILL SARGFSVFFQ MLVKAQKPLV GHNMMMDLLH LHEKFFRPLP BACU011748/1-514 ESCWKEKILL SARGFSVFFQ MLVKAQKPLV GHNMMMDLLH LHEKFFRPLP 351 400 ENSTTRP00000009872/1-530 ESYEEFKVNI HNLFPVLIDT KSVAKDIWKE LNFPRVSSLL EVYEVLNXXX ENSBTAP00000020180/1-531 ESYDEFKLNI HNLFPVLIDT KNVTKDIWKE LNFPRVSNLS EVYEVLNSDL bmy_19640T0/1-555 ESYDEFKLNI HNLFPVLIDT KNVTKDIWK- ---------- ---------- BACU011748/1-514 ESYDEFKLNI HNLFPVLIDT KNVTKDIWKE LNFPRASNLS EVYEFLNSDL 401 450 ENSTTRP00000009872/1-530 XXXXXXXXXX XXXXXXXXXX ETKYPHEAAY DAFLCGSVLL KVAHLLLWRA ENSBTAP00000020180/1-531 NPTKNSGPVI IHASRCEKYV ETKYPHEAAY DAFLCGSVLL KVAHLLLWKV bmy_19640T0/1-555 ---------- ---------- -TKYPHEAAY DAFLCGSVLL KVAHLLLWRV BACU011748/1-514 NPTKNSGPVI IHASRCEKYA ETKCPHEAAY DAFLCGSVLL KVAHLLLWRV 451 500 ENSTTRP00000009872/1-530 HGXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020180/1-531 HSAVPIPEPS FPLYLDVLAP YVNQVNLIRA GVPKINFAGP DSPSIRPPIL bmy_19640T0/1-555 HGALPIPEPS FPLYLDVLAP YVNQVNLIRA GVPTINFSGP DYPSIRPPIL BACU011748/1-514 HGALPISEPS FPLYLDVLAP YVNQVNLIRA GVPTINFSGP DCPSIRPPIL 501 550 ENSTTRP00000009872/1-530 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020180/1-531 ILTVRKWPGV SEQQVYREFQ NLCKFDVRRL TRSQFLLMTN KFKDTRSILK bmy_19640T0/1-555 IVTVRRWPGV SEQQVYHEFQ NLGKFDVRRL VGSQFLLLTN KFKDTRSILK BACU011748/1-514 VVTVRRWPGV SEQQVYREFQ NLGKFDVRRL VGSQFLLLTN KFKDTRSILK 551 600 ENSTTRP00000009872/1-530 XXXXXXXXXX XXXXXXXXXX XXXXXXXVCG VVTTWAFIAF LLGGARP ENSBTAP00000020180/1-531 EYRCHPTLRI SLYRYWRHSP DINCLLQVCS VITTWAFIAF LLGGAGL bmy_19640T0/1-555 EYRCHPTLQV SLYRYWRHSP NVSCLLQVCG VVTTWAFIAF LLGRARP BACU011748/1-514 EYRCHPTLQV SVYRYWRHSP NVSCLLQKGS ---------- -------