KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:35 2014 Check: 00 .. Name: ENSP00000341489/1-735 Len: 846 Check: 1363 Weight: 1.00 Name: ENSBTAP00000020203/1-653 Len: 846 Check: 5511 Weight: 1.00 Name: ENSTTRP00000014609/1-733 Len: 846 Check: 3248 Weight: 1.00 Name: bmy_19190T0/1-821 Len: 846 Check: 4415 Weight: 1.00 Name: BACU004866/1-757 Len: 846 Check: 3215 Weight: 1.00 // 1 50 ENSP00000341489/1-735 MAEPLLRKTF SRLRGREKLP RKKSDAKERG HPAQRPEPSP PEPEPQAPEG ENSBTAP00000020203/1-653 ---------- ---------- ---------G RPAQRPEPSP --PEPQAPEG ENSTTRP00000014609/1-733 MAEPLLKETF TRLRGRE-LP RKKSDAKERG RPAQRPEPSP PEPEPQAPEG bmy_19190T0/1-821 MAEPLLRKTF SRLRGREKLP RKKSDAKERG RPAQRPEPSP PEPEPQAPEG BACU004866/1-757 MAEPLLRKTF SRLRGREKLP RKKSDAKERG RPAQRPEPSP PEPEPQAPEG 51 100 ENSP00000341489/1-735 SQAGAEGPSS PEASRSPARG AYLQSLEPSS RRWVLGGAKP AEDTSLGPGV ENSBTAP00000020203/1-653 PQAGAEGPPS PEASRSPAHG AYLQSLEPSS RRWVLGGAKP PEEATLGPGA ENSTTRP00000014609/1-733 SQAGAEGPPS PEASRSPARG AYLQSLEPSS RRWVLGGAKP PDEATLGPGA bmy_19190T0/1-821 SQAGAEGPPS PEASRSPARG AYLQSLEPSS RRWVLGGAKP PDEATLGPGA BACU004866/1-757 PQAGAEGPPS PEASRSPARG AYLQSLEPSS RRWVLGGAKP PDEATLGPGA 101 150 ENSP00000341489/1-735 PGTGEPAGEI WYNPIPEEDP RPPAPEPPGP QPGSAESEGL APQGAAPASP ENSBTAP00000020203/1-653 PGSGEPAGEI WYNPIPEEDP RLPAPELP-- ---------- ---------- ENSTTRP00000014609/1-733 AGSREPAGEI WYNPIPEEDP RLPAPELPGP QPGSAEQESL ASR-AAPASP bmy_19190T0/1-821 AGSREPAGEI WYNPIPEEDP RLSAPELPGP QPGSAEPESL ASPGAAPASP BACU004866/1-757 AGSREPAGEI WYNPIPEEDP RLSAPELPGP QPGSAEPESL ASPGAAPASP 151 200 ENSP00000341489/1-735 PTKASRTKSP GPARRLSIKM KKLPELRRRL SLRGPRAGRE RERAAPAGSV ENSBTAP00000020203/1-653 ---------- ---------- ---------L SLRSTRTSRE RERAAPEGSV ENSTTRP00000014609/1-733 PTKASRTKSP GPARRLSMKM KKLPELRRRL SLRSTRAGRE RERAAPAGSV bmy_19190T0/1-821 PNKASRTKSP GPARRLSMKM KKLPELRRRL SLRSTRAGRE RERAAPAGSV BACU004866/1-757 PNKASRTKSP GPARRLSMKM KKLPELRRRL SLRSTRAGRE RERAAPAGSV 201 250 ENSP00000341489/1-735 ISRYHLDSSV GGPGPAAGPG GTRSPRAGYL SDGDSPERPA GPPSPTSFRP ENSBTAP00000020203/1-653 ISRYHLDSSV GTPGRTAVAE GARGPRAGYL SDGDSPERPA GPPSPTAFRP ENSTTRP00000014609/1-733 ISRYHLDSSV GTPGRAAVSE GARGLRAGYL SDGDSPERPA GPPSPTAFRP bmy_19190T0/1-821 ISRYHLDSSV GTPGRAAVSE GARGLRAGYL SDGDSPERPA GPPSPTAFRP BACU004866/1-757 ISRYHLDSSV GTPGRAAVSE GARGLRAGYL SDGFSPERPA GPPSPTAFRP 251 300 ENSP00000341489/1-735 YEVGPAARAP PAALWGRLSL HLYGLGGLRP APGATPRDLC CLLQVDGEAR ENSBTAP00000020203/1-653 YEVGPSARPP PAALWGRLSL HLYGLGGLRP APGATPRDLC CLLQVDGVAR ENSTTRP00000014609/1-733 YEVGPSARTP PTALWGRLSL HLYGLGGLRP APGATPRDLC CLLQVDGVAR bmy_19190T0/1-821 YEVGPSARTP PTALWGRLSL HLYGLGGLRP APGATPRDLC CLLQVDGVAR BACU004866/1-757 YEVGPSARTP PTALWGRLSL HLYGLGGLRP APGATPRDLC CLLQVDGVAR 301 350 ENSP00000341489/1-735 ARTGPLRGGP DFLRLDHTFH LELEAARLLR ALVLAWDPGV RRHRPCAQGT ENSBTAP00000020203/1-653 ARTGPLRGGP DFLRLDHTFH LELEAARLLR ALVLAWDPGV RRHRPCAQGT ENSTTRP00000014609/1-733 ARTGPLRGGP DFLRLDHTFH LELEAARLLR ALVLAWDPGV RRHRPCAQGT bmy_19190T0/1-821 ARTGPLRGGP DFLRLDHTFH LELEAARLLR ALVLAWDPGV RRHRPCAQGT BACU004866/1-757 ARTGPLRGGP DFLRLDHTFH LELEAARLLR ALVLAWDPGV RRHRPCAQGT 351 400 ENSP00000341489/1-735 VLLPTVFRGC QAQQLAVRLE PQGLLYAKLT LSEQQEAPAT AEPRVFGLPL ENSBTAP00000020203/1-653 VLLPTVFRGC QAQQLAVRLE PQGLLYAKLT LSEQQESPST AEPRVFGLPL ENSTTRP00000014609/1-733 VLLPTVFRGC EAQQLAVRLE PQGLLYAKLT LSEQQEAPGT AEPRVFGLPL bmy_19190T0/1-821 VLLPTVFRGC EAQQLAVRLE PQGLLYAKLT LSEQQEAPGT AEPRVFGLPL BACU004866/1-757 VLLPTVFRGC EAQQLAVRLE PQGLLYAKLT LSEQQEAPGT AEPRVFGLPL 401 450 ENSP00000341489/1-735 PLLVERERPP GQVPLIIQKC VGQIERRGLR VVGLYRLCGS AAVKKELRDA ENSBTAP00000020203/1-653 PLLVEREQSP GQVPLIIQKC VAQIERRGLR VVGLYRLCGS AAVKKELRDA ENSTTRP00000014609/1-733 PLLVEREQSP GQVPLIIQKC VGQIERRGLR VVGLYRLCGS AAVKKELRDA bmy_19190T0/1-821 PLLVEREQSP GQVPLIIQKC VGQIERRGLR VVGLYRLCGS AAVKKELRDA BACU004866/1-757 PLLVEREQSP GQVPLIIQKC VGQIERRGLR VVGLYRLCGS AAVKKELRDA 451 500 ENSP00000341489/1-735 FERDSAAVCL SEDLYPDINV IT-------- ---------- ---------- ENSBTAP00000020203/1-653 FERDSAAVCL SEDLYPDINV IT-------- ---------- ---------- ENSTTRP00000014609/1-733 FERDSAAVCL SEDLYPDINV IT-------- ---------- ---------- bmy_19190T0/1-821 FERDSAAVCL SEDLYPDINV ITGQHAPSLS CLLLIQPSPQ GSPCGPSGTS BACU004866/1-757 FERDSAAVCL SEDLYPDINV IT-------- ---------- ---------- 501 550 ENSP00000341489/1-735 ---------- ---------- ---------- ---------- ---GILKDYL ENSBTAP00000020203/1-653 ---------- ---------- ---------- ---------- ---GILKDYL ENSTTRP00000014609/1-733 ---------- ---------- ---------- ---------- ---GILKDYL bmy_19190T0/1-821 PLLLALFSPS CTYPPPVPLL PAPAESPASE TSGALIRVGP VSTGILKDYL BACU004866/1-757 ---------- ---------- -APAESPASE TSSALIRVGP VSTGILKDYL 551 600 ENSP00000341489/1-735 RELPTPLITQ PLYKVVLEAM ARDPPNRVPP TTEGTRGLLS CLPDVERATL ENSBTAP00000020203/1-653 RELPTPLITQ PLYQVVLEAM ALGPPSRAPS STEGTRELLS CLPDVERATL ENSTTRP00000014609/1-733 RELPTPLITQ PLYQVVLEAM AREPPSRAPS STEGTRGLLS CLPDVERATL bmy_19190T0/1-821 RELPTPLITQ PLYQVVLEAM AREPPSRAPS STEGTRGLLS CLPDVER--- BACU004866/1-757 RELPTPLITQ PLYQVVLEAM AREPPSRAPS STEGTRGLLS CLPDVERATL 601 650 ENSP00000341489/1-735 TLLLDHLRLV SSFHAYNRMT PQNLAVCFGP VLLPARQAPT RPRARSSGPG ENSBTAP00000020203/1-653 TLLLDHLRLV SSFHAHNRMT PQNLAVCFGP VLLPARQAPA RPRIRSSGPG ENSTTRP00000014609/1-733 TLLLDHLRLV SSFHAHNRMT PQNLAVCFGP VLLPARQAPA RPRIRSSGPG bmy_19190T0/1-821 ---------- ---------- --NLAVCFGP VLLPARQAPA RPRIRSSGPG BACU004866/1-757 TLLLDHLRLV SSFHAHNRMT PQNLAVCFGP VLLPARQAPA RPRIRSSGPG 651 700 ENSP00000341489/1-735 LASAVDFKHH IEVLHYLLQS WPD------- ---------- ---------- ENSBTAP00000020203/1-653 LSNAVDFKRH IEVLHYLLQA WPD------- ---------- ---------- ENSTTRP00000014609/1-733 VSNAVDFKRH IEVLHYLLQA WPD------- ---------- ---------- bmy_19190T0/1-821 LSNAVDFKRH IEVLHYLLQA WPGELALAPA PAPPIVARPP LRCFLQWPIR BACU004866/1-757 LSNAVDFKRH IEVLHYLLQA WPD------- ---------- ---------- 701 750 ENSP00000341489/1-735 ---------- ---PRLPRQS PDVAPYLRPK RQPPLHLPLA DPEVVTRPRG ENSBTAP00000020203/1-653 ---------- ---PRRPPEP PELVPYLRPK RQPSLHLPLA SPEVVTRPRG ENSTTRP00000014609/1-733 ---------- ---PRRPPEA PELVPYLRPK RQPPLHLPLA SPEVVTRPRG bmy_19190T0/1-821 VSGFRQATPP SPNPRRPPEA PELVPYLRPK RQPPLHLPLA SPEVVTRPRG BACU004866/1-757 ---------- ---PRRPPEA PELVPYLRPK RQPPLHLPLA SPEVVTRPRG 751 800 ENSP00000341489/1-735 RGGPESPPSN RYAGDWSVCG RDFLPCGRDF LSGPDYDHVT GSDSEDEDEE ENSBTAP00000020203/1-653 RGGPESPPSN RYAGDWSVCG RDFLPCGRDF LSGPDYDHVT GSDSEDEDDE ENSTTRP00000014609/1-733 RGGPESPPSN RYAGDWSVCG RDFLPCGRDF LSGPDYDHVT GSDSEDEDEE bmy_19190T0/1-821 RGGPESPPSN RYAGDWSVCG RDFLPCGRDF LSGPDYDHVT GSDSEDEDEE BACU004866/1-757 RGGPESPPSN RYAGDWSVCG RDFLPCGRDF LSGPDYDHVT GSDSEDEDEE 801 850 ENSP00000341489/1-735 VGEPRVTGDF EDDFDAPFNP HLNLKDFDAL ILDLERELSK QINVCL ENSBTAP00000020203/1-653 VGEPTGATDF EDDFEAPFNP HLNLKDFDAL ILDLERELSK QINVCL ENSTTRP00000014609/1-733 AGEPTVATDF EDDFDAPFNP HLNLKDFDAL IMDLERELSK QINVCL bmy_19190T0/1-821 AGEPTVATDF EDDFEAPFNP HLNLKDFDAL IMDLERELSK QINVCL BACU004866/1-757 AGEPTVATDF EDDFEAPFNP HLNLKDFDAL IMDLERELSK QINVCL