KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:39 2014 Check: 00 .. Name: ENSP00000269228/1-1278 Len: 1399 Check: 9 Weight: 1.00 Name: ENSBTAP00000020219/1-1277 Len: 1399 Check: 562 Weight: 1.00 Name: ENSTTRP00000008407/1-1276 Len: 1399 Check: 7671 Weight: 1.00 Name: bmy_05185T0/1-1359 Len: 1399 Check: 6925 Weight: 1.00 Name: BACU017859/1-989 Len: 1399 Check: 6715 Weight: 1.00 // 1 50 ENSP00000269228/1-1278 MTARGLALGL LLLLLC---- ----PAQVFS QSCVWYGECG IAYGDKRYNC ENSBTAP00000020219/1-1277 MSVRGPAFGL LLLLFC---- ----PAQVFS QSCIWYGECG IASGDKRYNC ENSTTRP00000008407/1-1276 MSACGPALGL LLLLLC---- ----PAQVFS QSCVWYGECG IASGDKRYNC bmy_05185T0/1-1359 MVASRQSLFP YMIADCKVTP AVTLASLVFS QSCVWYGECG IASGDKRYNC BACU017859/1-989 ---------- ---------- -----MLLFS ---------- ---------- 51 100 ENSP00000269228/1-1278 EYSGPPKPLP KDGYDLVQEL CPGFFFGNVS LCCDVRQLQT LKDNLQLPLQ ENSBTAP00000020219/1-1277 RYSGPPEPLP QDGYDLVQEL CPGFFFGNVS LCCDVQQLHT LKDNLQLPLQ ENSTTRP00000008407/1-1276 RYSGLPKPLP EDGYDLVQEL CPGFFFGNVS LCCDVQQLRT LKDNLQLPLQ bmy_05185T0/1-1359 RYSEPPKPLP EDGYDLVQEL CPGFFFGBVS LCCDVQQLRT LKDNLQLPLQ BACU017859/1-989 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000269228/1-1278 FLSRCPSCFY NLLNLFCELT CSPRQSQFLN VTATEDYVDP VTNQTKTNVK ENSBTAP00000020219/1-1277 FLSRCPSCFY NLVNLFCELT CSPRQSQFLN VTATEDYVDP ATNQTKTNVK ENSTTRP00000008407/1-1276 FLSRCPSCFY NLMNLFCELT CSPRQSQFLN VTAVEDYVDP VTNQTKTNVK bmy_05185T0/1-1359 FLSRCPSCFY NLMNLFCELT CSPRQSEFLN VTATEDYVDP VTNQTKTNVK BACU017859/1-989 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000269228/1-1278 ELQYYVGQSF ANAMYNACRD VEAPSSNDKA LGLLCGKDAD ACNATNWIEY ENSBTAP00000020219/1-1277 ELQYYVGESF ANAMYNSCRD VEAPSSNEKA LGLLCGREAS ACNATNWIEY ENSTTRP00000008407/1-1276 ELQYYVGESF ANAMYNACRD VEAPSSNEKA LGLLCGKEAE ACNATNWIEY bmy_05185T0/1-1359 ELQYYVGESF ANAMYNACKD VEAPSSNEKA LGLLCGKEAE ACNATNWIEY BACU017859/1-989 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000269228/1-1278 MFNKDNGQAP FTITPVFSDF PVHGMEPMNN ATKGCDESVD EVTAPCSCQD ENSBTAP00000020219/1-1277 MFNKDNGQAP FTITPVFSDL PTHGMEPMNN ATKGCDESVD EVTGPCSCQD ENSTTRP00000008407/1-1276 MFNKDNGQAP FTITPIFSDL PAHEMEPMNN ATKGCNESVD EVTGPCSCQD bmy_05185T0/1-1359 MFNKDNGQAP FTITPIFSDL PAHGMEPMNN ATKGCDESVD EVTGPCSCQD BACU017859/1-989 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000269228/1-1278 CSIVCGPKPQ PPPPPAPWTI LGLDAMYVIM WITYMAFLLV FFGAFFAVWC ENSBTAP00000020219/1-1277 CSAVCGPKPQ PPPPPVPWRI LGLDAMYVIM WSTYMAFLLV FFGAFFAVWC ENSTTRP00000008407/1-1276 CSIVCGPKPQ PPAPPVPWRI LGLDAMYVIM WSTYMAFLLV FFGAFFAVWC bmy_05185T0/1-1359 CLIVCGPKPQ PPALPVPWRI LGLDAMYVIM WSTYMAFLLV FFGAFFAVWC BACU017859/1-989 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000269228/1-1278 YRKRYFVSEY TPIDSNIAFS VNASDKGEAS CCDPVSAAFE GCLRRLFTRW ENSBTAP00000020219/1-1277 YRKRYFVSEF TPIDGNIPFS INASDKGGPT CCDPLGAAFE AHLRRLFEWW ENSTTRP00000008407/1-1276 YRKRYFVSEY TPIDGNIAFS VNASDKGGPS CCDSLGAAFE ARLQRLFTRW bmy_05185T0/1-1359 YRKRYFVSEY TPIDGNIAFS VNASDKGGPS CCDSLGATFE ARLQRLFSQW BACU017859/1-989 -RKRYFVSEY TPIDGNIAFS VNASDKGGPS CCDSLGATFE ARLQRLFSQW 351 400 ENSP00000269228/1-1278 GSFCVRNPGC VIFFSLVFIT ACSSGLVFVR VTTNPVDLWS APSSQARLEK ENSBTAP00000020219/1-1277 GSFCVRHPGC VVFFSVAFIA ACSSGLVFIQ VTTDPVDLWS APGSQARLEK ENSTTRP00000008407/1-1276 GLFCVQHPGC IVFFSV-FIA ACSSGLVFVQ VTTDPVDLWS APGSQARREK bmy_05185T0/1-1359 GSFCVRHPGC IVFFSVAFIA ACSSGLVFVQ VTTDPVDLWS APGSQARREK BACU017859/1-989 GSFCVRHPGC IVFFSVAFIA ACSSGLVFVQ VTTDPVDLWS APGSQARQEK 401 450 ENSP00000269228/1-1278 EYFDQHFGPF FRTEQLIIRA PLTDKHIYQP YPSGADVPFG PPLDIQILHQ ENSBTAP00000020219/1-1277 EYFDTHFGPF FRTEQLIIRA PHTPPHIYEP YPSGADVPFG PPLAVDILHQ ENSTTRP00000008407/1-1276 EYFDTHFGPF FRTEQLIIQA PLTQPHMYHP YPSGADVPFG PPLAVDILHQ bmy_05185T0/1-1359 EYFDTHFGPF FRTEQLIIQA PLTQPHTYSP IPSGADVPFG PPLALDILHQ BACU017859/1-989 EYFDTHFGPF FRTEQLIIQA PLTQPHTYSP VPSGADVSFG PPLALDILHQ 451 500 ENSP00000269228/1-1278 VLDLQIAIEN ITASYDNETV TLQDICLAPL SPYNTNCTIL SVLNYFQNSH ENSBTAP00000020219/1-1277 VLDLQTAIES ITASYNNETV TLRDICVAPL SPYNQNCTIL SVLNYFQNSH ENSTTRP00000008407/1-1276 VLDLQTAIEN ITASYNNETV TLQDICLAPL SPYNKHCTIM SVLNYFQNSH bmy_05185T0/1-1359 VLDLQTAIEN ITASYNNETV TLQDICLAPL SPYNKHCTIM SVLNYFQNSH BACU017859/1-989 VLDLQTAIEN ITASYNNETV TLQDICLAPL SPYNKHCTIM SVLNYFQNSH 501 550 ENSP00000269228/1-1278 SVLDHKKGDD FFVYADYHTH FLYCVRAPAS LNDTSLLHDP CLGTFGGPVF ENSBTAP00000020219/1-1277 SVLDHQVGDD FFVYADYHTH FLYCVRAPAS LNDTSLLHDP CLGTFGGPVF ENSTTRP00000008407/1-1276 SVLDHKVGDY FFVYADYHTH FLYCVRAPAS LNDTSLLHDP CLGTFGGPVF bmy_05185T0/1-1359 SVLDHKLGDY FFV------- ------APAS LNDTSLLHDP CLGTFGGPVF BACU017859/1-989 SVLDHKVGDD FFVYADYHTH FLYCVRAPAS LNDTSLLHDP CLGTFGGPVF 551 600 ENSP00000269228/1-1278 PWLVLGGYDD QNYNNATALV ITFPVNNYYN DTEKLQRAQA WEKEFINFVK ENSBTAP00000020219/1-1277 PWLVLGGYDD QNYNNATALV ITFPVNNYYN DTEKLQRAQA WEREFINFVQ ENSTTRP00000008407/1-1276 PWLVLGGYDD ENYNNATALV ITFPVNNYRN DTEKLQKAQA WEREFINFVK bmy_05185T0/1-1359 PWLVLGGYDD QNYNNATALV ITFPVNNYCN DTEKLQRAQA WETEFINFVK BACU017859/1-989 PWLVLGGYDD QNYNNATALV ITFPVNNYCN DTEKLQRAQA WEKEFINFVK 601 650 ENSP00000269228/1-1278 NYKNPNLTIS FTAERSIEDE LNRESDSDVF TVVISYAIMF LYISLALGHM ENSBTAP00000020219/1-1277 NYENPNLTIS FKAERSIEDE LNRESNSDVF TVLISYGVMF LYISIALGHI ENSTTRP00000008407/1-1276 NYKNPNLTIS FKAERSIEDE INRESNSDIF TVLISYGIMF LYISIALGHI bmy_05185T0/1-1359 NYKNPNLTIS FKAERSIEDE LNRESNSDIF T--------- ---------- BACU017859/1-989 NYKNPNLTIS FKAERSIEDE LDRESNSDIF TILISYGIMF LYISIALGHI 651 700 ENSP00000269228/1-1278 KSCRRLLVDS KVSLGIAGIL IVLSSVACSL GVFSYIGLPL TLIVIEVIPF ENSBTAP00000020219/1-1277 KSCRRLLVDS KISLGIAGVL IVLSSVACSL GIFSYIGVPL TLIVIEVIPF ENSTTRP00000008407/1-1276 ESCSRFLVDS KISLGIAGIL IVLSSVACSL GIFSYIGIPF TLIVIEVIPF bmy_05185T0/1-1359 -------VDS KISLGIAGIL IVLSSVACSL GIFSYIGIPF TLIVIEVIPF BACU017859/1-989 KSCSRFLVDS KISLGIAGIL IVLSSVACSL GIFSYIGIPF TLIVIEVIPF 701 750 ENSP00000269228/1-1278 LVLAVGVDNI FILVQAYQRD ERLQGETLDQ QLGRVLGEVA PSMFLSSFSE ENSBTAP00000020219/1-1277 LVLAVGVDNI FILVQTYQRD ERLQGETLDQ QVGRVLGEVA PSMFLSSFAE ENSTTRP00000008407/1-1276 LVLAVGVDNI FILVQTYQRD ERLQGETLDQ QVGRVLGEVA PSIFLSSFSE bmy_05185T0/1-1359 LVLAVGVDNI FILVQTYQRD ERLQGETLDQ QVGRVLGEVA PSIFLSSFSE BACU017859/1-989 LVLAVGVDNI FILVQTYQRD ERLQGETLDQ QVGRVLGEVA PSIFLSSFSE 751 800 ENSP00000269228/1-1278 TVAFFLGALS VMPAVHTFSL FAGLAVFIDF LLQITCFVSL LGLDIKRQEK ENSBTAP00000020219/1-1277 TVAFFLGGLS VMPAVHTFSL FAGMAVLIDF LLQITCFVSL LGLDIKRQEK ENSTTRP00000008407/1-1276 TVAFFLGGLS VMPAVHTFSL FAGMAVLIDF LLQITCFVSL LGLDVKRQER bmy_05185T0/1-1359 TVAFFLGGLS VMPAVHTFSL FAGMAVLIDF LLQITCFVSL LGLDIKRQEK BACU017859/1-989 TVAFFLGGLS VMPAVHTFSL FAGMAVLIDF LLQITCFVSL LGLDIKRQEK 801 850 ENSP00000269228/1-1278 NRLDIFCCVR GAEDGTSVQA SESCLFRFFK NSYSPLLLKD WMRPIVIAIF ENSBTAP00000020219/1-1277 NQLDVLCCVG GAADDAGIQA SESCLFRFFR NSYAPLLLKD WMRPLVVAVF ENSTTRP00000008407/1-1276 NRLDVLCCVG GATDRAGIQA SESCLFCFFR DAYAPFLLKD WMRPIVVAVF bmy_05185T0/1-1359 NRLDILCCVG DAADRAAIQA SESCLFRFFR NAYAPLLLKD WMRPIVVAVF BACU017859/1-989 NRLDVLCCVG DAADSAGIQA SESCLFHFFR NAYAPLLLKD WMRPIVVAVF 851 900 ENSP00000269228/1-1278 VGVLSFSIAV LNKVDIGLDQ SLSMPDDSYM VDYFKSISQY LHAGPPVYFV ENSBTAP00000020219/1-1277 VGVLSFSIAV LNKVEIGLDQ SLSMPDDSYV TDYFQSLNQY LHAGPPVYFV ENSTTRP00000008407/1-1276 VGVLSFSIAV LNKVEIGLDQ SLSMPDDSYV TDYFQSLSRY LHAGPPVYFV bmy_05185T0/1-1359 VGVLSFSIAV LNKVEIGLDQ SLSMPDDSYV TDYFQSLSRY LHAGPPVYFV BACU017859/1-989 VGVLSFSIAV LNKVEIGLDQ SLSMPDDSYV TDYFQSLNRY LHAGPPVYFV 901 950 ENSP00000269228/1-1278 LEEGHDYTSS KGQNMVCGGM GCNNDSLVQQ IFNAAQLDNY TRIGFAPSSW ENSBTAP00000020219/1-1277 LEEGHDYTST KGQNMVCGGL GCNNDSLVQQ VFTAAQLDSY TRIGFAPSSW ENSTTRP00000008407/1-1276 MEGGHDYASL KGQNMVCGGL GCNNDSLVQQ IFTAAQLDNY TRIGFALSSL bmy_05185T0/1-1359 VEGGHDYASL KGQNMVCGGL GCNNDSLVQQ IFTAAQLDNY TRIGFAPSSW BACU017859/1-989 VEGGHDYASL KGQNMVCGGL GCNNDSLVQQ IFTAAQLDNY TRIGFPPSSW 951 1000 ENSP00000269228/1-1278 IDDYFDWVKP QSSCCRVDNI TDQFCNASVV DPACVRCRPL TPEGKQRPQG ENSBTAP00000020219/1-1277 IDDYFDWVKP QSSCCRIYNS TEQFCNASVV NPTCVRCRPL TPEGKQRPQG ENSTTRP00000008407/1-1276 NDDYFDWVKP QSSCCRVYNS TDRFCNASVV DPACVHCRPL TPEGKQRPQG bmy_05185T0/1-1359 IDDYFDWVKP QSSCCRVYNS TDRFCNASVV DPACIHCRPL TPEGKQRPQG BACU017859/1-989 IDDYFDWVKP QSSCCRVYNS TDRFCNASVV DPACVHCRPL TPEGKQRPQG 1001 1050 ENSP00000269228/1-1278 GDFMRFLPMF LSDNPNPKCG KGGHAAYSSA VNILLGHGTR VGATYFMTYH ENSBTAP00000020219/1-1277 ADFMRFLPMF LSDNPNPKCG KGGHAAYSAA VNI-LDNGTR VGATYFMTYH ENSTTRP00000008407/1-1276 ADFMRFLPMF LSDNPNPKCG KGGHAAYSAA VNI-LGNGTG VGATYFMTYH bmy_05185T0/1-1359 ADFMRFLPMF LSDNPNPKCG KGGHAAYSAA VNI-LGNGTG VGATYFMTYH BACU017859/1-989 ADFMRFLPMF LSDNPNPKCG KGGHAAYSAA VNI-LGNGTG VGATYFMTYH 1051 1100 ENSP00000269228/1-1278 TVLQTSADFI DALKKARLIA SNVTETMGIN GSAYRVFPYS VFYVFYEQYL ENSBTAP00000020219/1-1277 TVLQTSADFI DAMEKARLIA SNITRTMNQQ GGDHRVFPYS VFYVFYEQYL ENSTTRP00000008407/1-1276 TVLKTSADFI DAMKKARLIA SNITRTMGLE GSDHRVFPYS VFYVFYEQYL bmy_05185T0/1-1359 TVLKTSADFI DAMEKARLIA SRITRTMGLE GSDHRVFPYS VFYVFYEQYL BACU017859/1-989 TVLKTSADFI DAMEKARLIA SRITRTMGLE GSDHRVFPYS VFYVFYEQYL 1101 1150 ENSP00000269228/1-1278 TIIDDTIFNL GVSLGAIFLV TMVLLGCELW SAVIMCATIA MVLVNMFGVM ENSBTAP00000020219/1-1277 TMIDDTIFNL SVSLGAIFLV AVVLLGCELW SAVIMCATIA MILVNMFGVM ENSTTRP00000008407/1-1276 TMIDDTLFNL GVSLGAIFVV TVVLLGCELW SAVIMCVTIA MILVNMFGVM bmy_05185T0/1-1359 TMIDDTIFNL GVSLGAIFLV TVVLLGCELW SAVIMCITIA MILVNMFGVM BACU017859/1-989 TMIDDTIFNL GVSLGAIFLV TVVLLGCELW SAVIMCITIA MILVNMFGVM 1151 1200 ENSP00000269228/1-1278 WLWGISLNAV SLVNLVMSCG ISVEFCSHIT RAFTVSMKGS RVERAEEALA ENSBTAP00000020219/1-1277 WLWGISLNAV SLVNLVMSCG ISVEFCSHIT RAFTVSTKGS RVERAEEALS ENSTTRP00000008407/1-1276 WLWGISLNAV SLVNLVMSCG ISVEFCSHIT RAFTVSTKGS RVERAEEALS bmy_05185T0/1-1359 WLWGISLNAV SLVNLVMSCG ISVEFCSHIT RAFTVSTKGS RVERAEEALS BACU017859/1-989 WLWGISLNAV SLVNLVMSCG ISVEFCSHIT RAFTVSTKGS RVERAEEALS 1201 1250 ENSP00000269228/1-1278 HMGSSVFSGI TLTKFGGIVV LAFAKSQIFQ IFYFRMYLAM VLLGATHGLI ENSBTAP00000020219/1-1277 HMGSSVFSGI TLTKFGGIIV LAFAKSQIFQ IFYFRMYLAM VLLGATHGLI ENSTTRP00000008407/1-1276 RMGSSVFSGI TLTKFGGITV LAFAKSQIFK RFYFRMYFAM VLLGATHGLI bmy_05185T0/1-1359 HMGSSVFSGI TLTKFGGIMV LAFAKSQIFQ IFYFRMYLAM VLLGATHGLI BACU017859/1-989 HMGSSVFSGI TLTKFGGIMV LAFAKSQIFQ IFYFRMYLAM VLLGATHGLI 1251 1300 ENSP00000269228/1-1278 FLPVLLSYIG PSVNKAKSCA TEERYK---- ---------- -----GTERE ENSBTAP00000020219/1-1277 FLPVLLSYIG PSINKAKSLT TQQRYR---- ---------- -----GTERE ENSTTRP00000008407/1-1276 FLPVLLSYIG PPINKAKSLA AQERHR---- ---------- -----GTERE bmy_05185T0/1-1359 FLPVLLSYIG PSISKARSLA AQERYRVFSC KGKYRFNPLD KARKEENENE BACU017859/1-989 FLPVLLSYIG PSISKARSLA AQERYR---- ---------- -----GTERE 1301 1350 ENSP00000269228/1-1278 R--------L LNF------- ---------- ---------- ---------- ENSBTAP00000020219/1-1277 Q--------L LNF------- ---------- ---------- ---------- ENSTTRP00000008407/1-1276 R--------L LNF------- ---------- ---------- ---------- bmy_05185T0/1-1359 HFAAPRSLEL LSFPFTQLVP LQNLYSPQQT ALCPERQGRS RSSPNQKASR BACU017859/1-989 Q--------L LNF------- ---------- ---------- ---------- 1351 1400 ENSP00000269228/1-1278 ---------- ---------- ---------- ---------- --------- ENSBTAP00000020219/1-1277 ---------- ---------- ---------- ---------- --------- ENSTTRP00000008407/1-1276 ---------- ---------- ---------- ---------- --------- bmy_05185T0/1-1359 PPPAASALLL LSESVVTPGL FPAAIFSPGV KLGFPRKRWF RCSKNRNIV BACU017859/1-989 ---------- ---------- ---------- ---------- ---------