KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:40 2014 Check: 00 .. Name: ENSP00000332148/1-767 Len: 863 Check: 8701 Weight: 1.00 Name: ENSBTAP00000020222/1-578 Len: 863 Check: 5345 Weight: 1.00 Name: ENSTTRP00000006949/1-768 Len: 863 Check: 5995 Weight: 1.00 Name: bmy_10306T0/1-854 Len: 863 Check: 6321 Weight: 1.00 Name: BACU003170/1-830 Len: 863 Check: 1252 Weight: 1.00 // 1 50 ENSP00000332148/1-767 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020222/1-578 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006949/1-768 ---------- ---------- ---------- ---------- ---------- bmy_10306T0/1-854 MPGMQPGRGA GGERRAVQVT GATGRRGFNS SGSGALRGPG GELRLGTRGL BACU003170/1-830 ---------- ------MAVV GMLVLDGFVS G--------- --VCVGEEYL 51 100 ENSP00000332148/1-767 ---------- ---------- ---------- --------MQ SPAATAEGLS ENSBTAP00000020222/1-578 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006949/1-768 ---------- ---------- ---------- --------MQ SHATTAQGLS bmy_10306T0/1-854 PPGRLRTE-- -ALSQLLCLL PWSWWHPSPV VSPGLPPSMQ CHATTAQGLS BACU003170/1-830 RKGNIGAETE KALSQLLCLL PWSWWHPSPV VSPGLPPSMQ SHATTAQGLS 101 150 ENSP00000332148/1-767 GPLFGAYTFP TFKFQPRHDS MDWRRISTLD VDRVARELDV ATLQENIAGI ENSBTAP00000020222/1-578 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006949/1-768 DPLFAAYTLP TFKFQPRRER MDWRRISALD VDRVARELDV ATLQENIVSV bmy_10306T0/1-854 DPLFAAYTLP AFKFQPRRER IDWRRISALD VDRVARELDV ATLQENIVSV BACU003170/1-830 DPLFAAYTLP AFKFQPRRER MDWRRISALD VDRVARELDV ATLQETIVSV 151 200 ENSP00000332148/1-767 TFCNLDREVC SRCGQPVDPA LLKVLRLAQL IIEYLLHCQD CLSASVAQLE ENSBTAP00000020222/1-578 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006949/1-768 TFCNLDREVC GRCGQPVDPA LLKVLRLAQL TIEYLLHCQD CLSTSVAQLE bmy_10306T0/1-854 TFCNLDREVC GRCGQPVDPA LLKVLRLAQL SIEYLLHCQD CLSASVAQLE BACU003170/1-830 TFCNLDREVC GRCGQPVDPA LLKVLRLAQL TIEYLLHCQD CLSASVAQLE 201 250 ENSP00000332148/1-767 ARLQTSLGQQ QRGQQELGRQ ADELKGVREE SRRRRKMIST LQQLLMQTGT ENSBTAP00000020222/1-578 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006949/1-768 ARLQASLGQQ ERGQQELGRQ ADELRGVREE SRRRRKMISA LQQLLLQTGA bmy_10306T0/1-854 ARLQASLGQQ ERGQQELGRQ ADELRGVREE SRRRRKMISA LQQLLLQTGA BACU003170/1-830 ARLQASLGQQ ERGQQELGRQ ADELRGVREE SRRRRKMISA LQQLLLQTGA 251 300 ENSP00000332148/1-767 HSYHTCHLCD KTFMNATFLR GHIQRRHAGV AEGGKQKKQE QPVEEVLEEL ENSBTAP00000020222/1-578 ---------- ---------- ---------- ---GKQRKQE QPVEEVLEEL ENSTTRP00000006949/1-768 HSYHACHLCD KTFMNATFLR GHIQRRHTGV VEGGKQKKQE QPVEEVLEEL bmy_10306T0/1-854 HSYRACHLCD KTFMNATFLR GHIQRRHTGV VEGGKQKKQE QPVEEVLEEL BACU003170/1-830 HSYRACHLCD KTFMNATFLR GHIQRRHTGM VEGGKQKKQE QPVEEVLEEL 301 350 ENSP00000332148/1-767 RAKLKWTQGE LEAQREAERQ RQLQEAELIH QREIEAKKEF DKWKEQEWTK ENSBTAP00000020222/1-578 RAKLKWTQGE LEAQREAERQ RQLQEAEIIR QREAETKKEF DEWKEKERAK ENSTTRP00000006949/1-768 WAKLKWTQGE LEAQRAAERQ RQLQEAEITR QREAEAKKEF DEWKEKERAK bmy_10306T0/1-854 WAKLKWTQGE LEAQRAAERQ RQLQEAEITR QREAEAKKEF DEWKEKEQAK BACU003170/1-830 WAKLKWTQGE LEAQRAAERQ RQLQEAEITR QREAEAKKEF DEWKEKEQAK 351 400 ENSP00000332148/1-767 LYGEIDKLKK LFWDEFKNVA KQNSTLEEKL RALQSHSVME SKLGSLRDEE ENSBTAP00000020222/1-578 LYGEIDKLKK LFWDEFKSVA NQNSTLEEKL QALQSHSVMK SNLGSLRDEE ENSTTRP00000006949/1-768 LYGEIDKLKK LFWDEFKSVA NQNSTLEEKL QALQSHKVMK SNLGSLQDED bmy_10306T0/1-854 LYGEIDKLKK LFWDEFKSVA NQNSTLEEKL QALQSHKVLK SNLGSLQDEE BACU003170/1-830 LYGEIDKLKK LFWDEFKSVA NQNSTLEEKL QALQSHKVLK SNLGSLQDEE 401 450 ENSP00000332148/1-767 SEEWLRQARE LQALREKTEI QKTEWKRKVK ELHEEHMAEK KELQEENQRL ENSBTAP00000020222/1-578 PEERLRQAQE LWALKEKMEI QKTEWRRKMK ALQEEHAAQK RELQEQNERL ENSTTRP00000006949/1-768 PEERLSQAQE LRGLKEKMEI QKTEWKRKMK VLQEEHAAQK RELQEQNERL bmy_10306T0/1-854 PEERLRQAQE LRDLKEKMEI QKTEWKRKMK ALQEEHASQK RELQEQNERL BACU003170/1-830 PEERLRQAQE LRDLKEKMEI QKTEWKRKMK ALQEEHAAQK RELQEQNERL 451 500 ENSP00000332148/1-767 QASLSQDQKK AAAQSQCQIS TLRAQLQEQA RIIASQEEMI QSLSLRKVEG ENSBTAP00000020222/1-578 QATLSQDQRK AAAQAQRQIH ALRTQLQEQA RLIASQEEMM QALSLRKVEG ENSTTRP00000006949/1-768 QASLSQDQRK AAIQAQRQIT ALRAQLQEQT RLIASQEEMI QTMSLRKVEG bmy_10306T0/1-854 QASLSQDQRK AAIQAQRQIT ALRAQLQEQT RLIASQEEMI QTMSLRKVEG BACU003170/1-830 QASLSQDQRK AAIQAQRQIT ALRAQLQEQT RLIASQEEMI QTMSLRKVEG 501 550 ENSP00000332148/1-767 IHKVPKAVDT EEDSPEEEME DSQDEQHKVL AALRRNPTLL KHFRPILEDT ENSBTAP00000020222/1-578 ICEGPKAVDT DEDSSEEELE DSHSGQQKVL EALRRNPTLL KQFRPVLEDT ENSTTRP00000006949/1-768 ICKGPKAVDT EKDSSEEELE DSRSGQQKVL AALSRNPTLL KQFRPVLEDT bmy_10306T0/1-854 IRKGPKAVDT EKDSSEEELE DSRSGQQKVL AALSRNPTLL KQFRPVLEDT BACU003170/1-830 IRKGPKAVDT EKDSSEEELE DSRSGQQKLL AALSRNPTLL KQFRPVLEDT 551 600 ENSP00000332148/1-767 LEEKLESMGI RKDAKGISIQ TLRHLESLLR VQREQKARKF SEFLSLRGKL ENSBTAP00000020222/1-578 LEEKLESMGI KRDAKGIPAQ TLRHLESILR AQREQKARRF SEFLSLREKL ENSTTRP00000006949/1-768 LEEKLESMGI KRDAKGIPAH TLRHLESLLR AQREQKAGRF SEFLSLREKL bmy_10306T0/1-854 LEEKLESMGI KRDAKGIPAH TLRHLESLLR AQREQKAGRF SEFLSLREKL BACU003170/1-830 LEEKLESMGI KRDAKGIPAH TLRHLESLLR AQREQKAGRF SEFLSLREKL 601 650 ENSP00000332148/1-767 VKEVTSRAKE -RQENGAVVS QPDGQPSVKS QQSTLVTREA QPKTRTLQVA ENSBTAP00000020222/1-578 IKEATSRVKD -RQRDRAPVS QPEGEVPVKS QQSPLVTKEV QPKARTLHVA ENSTTRP00000006949/1-768 IKEASSRAKE ERQWNRAPVS QPDGEAPVKS QQSTPVTKEA QTKARTLHVA bmy_10306T0/1-854 IKEASSRVKE GRQWNRARLS QPDGEAPVKS QQSTPVTKEA QPKARTLHVA BACU003170/1-830 IKEASSRVKE ERQWNRAPVS QPDGEAPVKS QQSTPVTKEA QPKARTLHVA 651 700 ENSP00000332148/1-767 LPSTPAEPPP PTRQSHGSHG SSLTQVSAPA PRPGLHGPSS TPPSSGPGM- ENSBTAP00000020222/1-578 QPSKPAEPPV TSLQSRSSHS LGLAPGPSPT PRSRASGPPG TPASPGPGL- ENSTTRP00000006949/1-768 QSSKLAESPV SPLQIRGSHG LGLAQGPTRT PGSRAPGPSS TPPSLGPGL- bmy_10306T0/1-854 QSSKPAESPV SPLQSRGSHG PGLAQGPTPT PRSRAPGPSS TPASLGPGLS BACU003170/1-830 QSSKPAESPV SPLQSRGSHG PGLAQGPTPT PGSRAPGPSS TLASLGPGLS 701 750 ENSP00000332148/1-767 STPPFSSEED SEGDRVQRVS LQPPKVPSRM VPRPKDDWDW SDTETSEENA ENSBTAP00000020222/1-578 STPPFSSEED SEGDAGPRAS LQPPRVPSRV GPRPQDDWDW SDTETSEGSA ENSTTRP00000006949/1-768 STPPFSSEEA SEADASSHVS LQPPRLPSRR GPRPQDDSDW SDTETSEGSA bmy_10306T0/1-854 STPPFSSEED SEADAGSYAS LQPPRVPSRL APRPQVDWGW SDTETSEGSA BACU003170/1-830 STPPFSSEED SEADAGSHAS LQPPRVPLRL GPRPQDDWGW SDTETSEGSA 751 800 ENSP00000332148/1-767 QPPGQG---- --SGTLVQSM VKNLEKQLEA PAKKPAGGVS LFFMPNAGPQ ENSBTAP00000020222/1-578 QSPGKGSGGL ASSGTLVQSM VRNLEKQLEA PAKKPAGGVS LFSVPSAGPQ ENSTTRP00000006949/1-768 QMPGKS---- --SGTLVRSM VRNHEKQLEA STKKPAGEVS LFCKPSAGPQ bmy_10306T0/1-854 QTPGKG---- --SGTLVRSM VRNHEKQLEA SAKKPAGEIS QFSKPNARPQ BACU003170/1-830 RTPGKG---- --SGTLVRSM VRNHEKQLET SAKKPAGEVS LFSKPNARPQ 801 850 ENSP00000332148/1-767 RAATPGRKPQ LSEDESDLEI SSLEDLPLDL DQREKPKPLS RSKLPEKFGT ENSBTAP00000020222/1-578 RAAVPGGKPQ LSEDESDLEI SSLEDLPQNL NQREKPKPLS RSKLPEKFGT ENSTTRP00000006949/1-768 RAAVPGGKPQ LSEDESDLEI SSLEDLPQDV IQREKPKPLS RSKLPEKIGA bmy_10306T0/1-854 RAAVPGGKPQ LSEDESDLEI SSLEDLPQDL NQREKPKPLS RSKLPEKIGA BACU003170/1-830 RAAVPGGKPQ LSEDESDLEI SSLEDLPQDL NQREKPKPLP RSKPPEKIGA 851 900 ENSP00000332148/1-767 GPQSSGQPRV PAW ENSBTAP00000020222/1-578 SSWSPSQPRV PGW ENSTTRP00000006949/1-768 SSWSPGQPRA PGW bmy_10306T0/1-854 SSWSPGQPRV PGW BACU003170/1-830 SSWSPGQPRV PGW