KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:41 2014 Check: 00 .. Name: ENSP00000343957/1-515 Len: 579 Check: 9224 Weight: 1.00 Name: ENSBTAP00000020239/1-530 Len: 579 Check: 6332 Weight: 1.00 Name: BACU010396/1-255 Len: 579 Check: 4132 Weight: 1.00 Name: ENSTTRP00000009331/1-514 Len: 579 Check: 1753 Weight: 1.00 Name: bmy_01207T0/1-560 Len: 579 Check: 562 Weight: 1.00 // 1 50 ENSP00000343957/1-515 ---------- ---------- ---------- ---------- -MLLSQNAFI ENSBTAP00000020239/1-530 ---------- ---------- ---------- ---------- -MLLSQNVSA BACU010396/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009331/1-514 ---------- ---------- ---------- ---------- -MVLSQNVSA bmy_01207T0/1-560 VRRVAAEPGC GGCARGWHPE DNGEAKRPRC ESKERTYKIT KMLLSQNVSA 51 100 ENSP00000343957/1-515 FRSLNLVLMV YISLVFGISY DSPDYTDESC TFKISLRNFR SILSWELKNH ENSBTAP00000020239/1-530 IGPLNLYPMV HISLVFGISY VAPVLSDEHC TLKMRFRNFQ SVLSWELKNH BACU010396/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009331/1-514 VGPLNLYPMV HISLMFGISY VLPDFSDESC TLKMTLRNLQ SVLSWELKNH bmy_01207T0/1-560 VGPLNLYPMV HISLMFGISY VLPDFSDESC TLKMTLRNLQ SILSWEFKNH 101 150 ENSP00000343957/1-515 SIVPTHYTLL YTIMSKPEDL KVVKNCANTT RSFCDLTDEW RSTHEAYVTV ENSBTAP00000020239/1-530 SIVPTHYTLW YTIMSKREDM KVVKDCINVT RSFCDLTDVW VNTTDMYIPQ BACU010396/1-255 ---------- -MSESKEQTL RIDTLC---- ---------- ---------- ENSTTRP00000009331/1-514 SIVPTHYTLW YTIMSKHEDM KIVGDCTNIT RSFCDLTDVW VNMTEMYIPK bmy_01207T0/1-560 SIVPTHYTLW YTIMSKQEDM KIVGDCTNIT RSFCDLTDVW VNMTEMYIPK 151 200 ENSP00000343957/1-515 LEGFSGNTTL FSCSHNFWLA ID-MSFEPPE FEIVGFTNHI NVMVKFPSIV ENSBTAP00000020239/1-530 VVGFRENAKL VICMGSFFLV PD-KPLDPPE FEIVGFTNHI SVNVKFQFDS BACU010396/1-255 ---------- --CF--FFLK ---------- ---------- ---------- ENSTTRP00000009331/1-514 VVGFRGNAEL VSCMGSFFLA MD-MPLDPPE FEIVGFTDHI SVNVKFQSVA bmy_01207T0/1-560 VVGFRGNAAL VSCMGSFFLX MDTLPLDPPE FEIIGFTDHI GVNVKFQSVA 201 250 ENSP00000343957/1-515 -----EEELQ FDLSLVIEEQ SEGIVKKHKP EIKGNMSGNF TYIIDKLIPN ENSBTAP00000020239/1-530 PGIL-SEELQ FYLAF-IEEH AGNSVKRHQP QITGNITKNF NYVIDKLIPN BACU010396/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009331/1-514 PKILNEEELQ FYLAL-IEEQ SGGTVKKHKP QINGNVTENF IYIIDKLIPK bmy_01207T0/1-560 PKILNEEELQ FYLAL-IEEQ SGGIVKKHKP KINGNITENF SYVIDKLIPK 251 300 ENSP00000343957/1-515 TNYCVSVYLE HSDEQAVIKS PLKCTLLPPG QESESAESAK IGGIITVFLI ENSBTAP00000020239/1-530 TNYCISVYFE PKDPRKINRS PLKCTLFRPR RESESSESAT IGGIITLFLI BACU010396/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009331/1-514 TNYCVSVYFE PKHPRKINRS PLKCTLFQPG WESESSESAT IGGIITLFLV bmy_01207T0/1-560 TNYCVSVYFE PKDLRKMNRS PLKCTLFQPG WESESSESAT IGGIITLFLI 301 350 ENSP00000343957/1-515 ALVLTSTIVT LKWIGYICLR NSLPKVLNFH NFLAWPFPNL PPLEAMDMVE ENSBTAP00000020239/1-530 TAVFISTVMI LKRIGYICLR NDFPKVLNFY KLSVWVFAEL PPLEKVATVE BACU010396/1-255 ---------- ---------- -------NFY KLSVCVFPEL PPLEKVATVE ENSTTRP00000009331/1-514 AAVVISTVMM LKRIGYICVR NNFPKVLNFN KLSVWVFPEL PPLEKVATVE bmy_01207T0/1-560 AAVVISTVMM LKRIGYICLR NDFPKVLSFY KLSVCVFPEL PPLEKVATVE 351 400 ENSP00000343957/1-515 VIYINRKKKV WDYNYDDESD SDTEAAPRTS GGGYTMHGLT VRPLGQASAT ENSBTAP00000020239/1-530 VIHVNRKKKV WNYNYDDEND IENEAAPHLI SGGYTKHGLT GK-LCPTSTT BACU010396/1-255 VIHINRKKKV WNYNYDDESD SDNEAAPRIS AGGYTTHGLT GR-LCPASVS ENSTTRP00000009331/1-514 LIHINRKKKV WNYNYDDESD SDDEAAPRIS AGGYTTHGLT GRPLCSATGG bmy_01207T0/1-560 VIHINRKKKV WNYNYDDESD SDNEAAPRIS TGGYTTHGLT GR-LCPASVS 401 450 ENSP00000343957/1-515 STESQ----- -LIDPESEEE PDLPE--VDV ELPTMPKDSP QQLELLSGPC ENSBTAP00000020239/1-530 SPSLEDCSLE DCSEPSA-EE PYLPEPKGDA ETPMAPGPGP WQSEGTSGGY BACU010396/1-255 SATLED---- -CSDPAT-EE CDLPEPKAGA EAPVAPGPSP WQSECTSRGY ENSTTRP00000009331/1-514 ---------- -LQDPAT-EE RDLPEPEADA EALTAPGPSP WQSECTSRGY bmy_01207T0/1-560 SATLED---- -CSDSAT-EE CDLPEPKADA EALMAPGPSP WQSECTSRGY 451 500 ENSP00000343957/1-515 ERRKSPLQDP FPEEDYSSTE GSGGRITFNV DLNSVFLRVL DDEDSDDLEA ENSBTAP00000020239/1-530 QTRGTLWQDP TSEEDSDSTE GSEGRIVFNV NLNSVCVRAL --EDDKDSEV BACU010396/1-255 QGRANLLQDH FSEEDSSSTE GSGDRIVFNV DLNSVCVRAL --EDNDDSEV ENSTTRP00000009331/1-514 QGRGNLLQDP FSEEDSSPTE GSGDRIVFNV DLNSVCVRAL --EDNDDSEV bmy_01207T0/1-560 QGRGKLLQDH FSEEDSSSTE GSGDRIVFNV DLNSVCVRVL --EDNDDSEV 501 550 ENSP00000343957/1-515 PLMLSSHLEE MVDPEDPDNV QSN-HLLASG EGTQPTFPSP SSEGLWSEDA ENSBTAP00000020239/1-530 TLMSPSCPEE TVELEDLNET ESS-VLVASE EGTQLPFTNP STECPRPQDA BACU010396/1-255 TPVLPSRPEE TVVLEDPDET ESD-LLVASG EGTQLPFPGP SAECLWPEDT ENSTTRP00000009331/1-514 TPMLASGPEE TAVLEDPDET ESNLLLVASG EGTQLPFPGP SAEYPWPEDS bmy_01207T0/1-560 TPALPSRPEE TVVLEDPDET EXN-LLVASG EGTQLPFPGP SAECPWPEDP 551 600 ENSP00000343957/1-515 PSDQSDTSES DVDLGDGYIM R-------- ENSBTAP00000020239/1-530 PSDKSDTSES DVDMGDGYIV RQVNLKKFN BACU010396/1-255 PSDKSDTSES DVDMGDGYVT R-------- ENSTTRP00000009331/1-514 PSDESDTSES DVDMGDGYVM R-------- bmy_01207T0/1-560 PSDKSDTSES DVDMGDGYVM R--------