KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:43 2014 Check: 00 .. Name: bmy_08884T0/1-314 Len: 569 Check: 2844 Weight: 1.00 Name: BACU019719/1-542 Len: 569 Check: 2069 Weight: 1.00 Name: ENSTTRP00000009894/1-541 Len: 569 Check: 5427 Weight: 1.00 Name: ENSP00000419027/1-559 Len: 569 Check: 998 Weight: 1.00 Name: ENSBTAP00000020252/1-539 Len: 569 Check: 6000 Weight: 1.00 // 1 50 bmy_08884T0/1-314 --MSGSKRKS S-----GDVV GTAKKCQAIT VERKMKIIER VEQ------- BACU019719/1-542 -MAAAAMRVA APGIRLSAVV RSLRAAVRSV CTQPVSVNER IENKRQAALL ENSTTRP00000009894/1-541 MAAAAAMRVA APGIRLSAVV RSLRAAVRSV CTQPVSVNER IENKRQAALL ENSP00000419027/1-559 --MAAALRVA AVGARLSVLA SGLRAAVRSL CSQATSVNER IENKRRTALL ENSBTAP00000020252/1-539 --MAAAMRVA VAGARLSVVL RSLRGAGRSL CTQPVSVNER IENKRQAALL 51 100 bmy_08884T0/1-314 --GKKMVDIT HSY-NMNCST ICTILNNKDK IMEHEVC--- -CAD-----D BACU019719/1-542 GGGQRRIDAQ HKRGKLTARE RISLLLDPGS FVESDMFVEH RCADFGMAAD ENSTTRP00000009894/1-541 GGGQHRIDAQ HKRGKLTARE RISLLLDPGS FVESDMFVEH RCADFGMAAD ENSP00000419027/1-559 GGGQRRIDAQ HKRGKLTARE RISLLLDPGS FVESDMFVEH RCADFGMAAD ENSBTAP00000020252/1-539 GGGQRRIDAQ HKRGKLTARE RISLLLDPGS FVESDMFVEH RCADFGMAAD 101 150 bmy_08884T0/1-314 VNNTIEEAWK SDGG--DEKL LSVWMQ---- ---------- ---------- BACU019719/1-542 KNKFPGDSVV TGRGRINGRL VYVFSQ---- ---------- ------DFTV ENSTTRP00000009894/1-541 KNKFPGDSVV TGRGRINGRL VYVFSQ---- ---------- ------DFTV ENSP00000419027/1-559 KNKFPGDSVV TGRGRINGRL VYVFSQQIIG WAQWLPLVIS ALWEAEDFTV ENSBTAP00000020252/1-539 KNKFPGDSVV TGRGRINGRL VYVFSQ---- ---------- ------DFTV 151 200 bmy_08884T0/1-314 ---------D QHQCRVL--- ---------- ---------- ---------- BACU019719/1-542 FGGSLSGAHA QKICKIMDQA MTVGAPVIGL NDSGGARIQE GVESLAGYAD ENSTTRP00000009894/1-541 FGGSLSGAHA QKICKIMDQA MTVGAPVIGL NDSGGARIQE GVESLAGYAD ENSP00000419027/1-559 FGGSLSGAHA QKICKIMDQA ITVGAPVIGL NDSGGARIQE GVESLAGYAD ENSBTAP00000020252/1-539 FGGSLSGAHA QKICKIMDQA LTVGAPVIGL NDSGGARIQE GVESLAGYAD 201 250 bmy_08884T0/1-314 ---------- ---------- ---------- ----FSLML- ---------- BACU019719/1-542 IFLRNVTASG VIPQISLIMG PCAGGAVYSP ALTDFTFMVK DTSYLFITGP ENSTTRP00000009894/1-541 IFLRNVTASG VIPQISLIMG PCAGGAVYSP ALTDFTFMVK DTSYLFITGP ENSP00000419027/1-559 IFLRNVTASG VIPQISLIMG PCAGGAVYSP ALTDFTFMVK DTSYLFITGP ENSBTAP00000020252/1-539 IFLRNVTASG VIPQISLIMG PCAGGAVYSP ALTDFTFMVK DTSYLFITGP 251 300 bmy_08884T0/1-314 ---------- ---------- ----IQEKAK RLYE------ ---------- BACU019719/1-542 DVVKSVTNED VTQEGLGGAR THTTMSGVAH RAFENDVDAL CNLREFFNYL ENSTTRP00000009894/1-541 DVVKSVTNED VTQEELGGAR THTTMSGVAH RAFENDVDAL CNLREFFNYL ENSP00000419027/1-559 DVVKSVTNED VTQEELGGAK THTTMSGVAH RAFENDVDAL CNLRDFFNYL ENSBTAP00000020252/1-539 DVVKSVTNED VTQEELGGAR THTTMSGVAH RAFENDVDAL CNLREFFNYL 301 350 bmy_08884T0/1-314 ---------- ---------- ---------- ---------- ---------- BACU019719/1-542 PLSNQDPAPI RECHDPSDSK LENTFHGKSM EKQTLSCVAG VNLSLQVVDE ENSTTRP00000009894/1-541 PLSNQDPAPV RECHDPXXXX XXXXXXXXXX XXXXXXXX-- XXXXXXVVDE ENSP00000419027/1-559 PLSSQDPAPV RECHDPSDRL VPELDTIVPL ESTKAYNM-- VDIIHSVVDE ENSBTAP00000020252/1-539 PLSNQDPAPV LECHDPSDRL VPELDTIVPL ESTKAYNM-- VDIIHAVVDE 351 400 bmy_08884T0/1-314 ----DLKKKY GEE------- ---------- -----SGGCL DINSSVKGAR BACU019719/1-542 REFFEIMPSY AKNIIVGFAR MNGRTVGIVG NQPKVASGCL DINSSVKGAR ENSTTRP00000009894/1-541 REFFEIMPSY AKNIIVGFAR MNGRTVGIVG NQPKVASGCL DINSSVKGAR ENSP00000419027/1-559 REFFEIMPNY AKNIIVGFAR MNGRTVGIVG NQPKVASGCL DINSSVKGAR ENSBTAP00000020252/1-539 REFFEIMPNY AKNIIVGFAR MNGRTVGIVG NQPKVASGCL DINSSVKGAR 401 450 bmy_08884T0/1-314 FVRFCDAFNI PLITFVDVPG FLPGTAQEYG GIIRHGAKLL YAFAEATVPK BACU019719/1-542 FVRFCDAFNI PLITFVDVPG FLPGTAQEYG GIIRHGAKLL YAFAEATVPK ENSTTRP00000009894/1-541 FVRFCDAFNI PLITFVDVPG FLPGTAQEYG GIIRHGAKLL YAFAEATVPK ENSP00000419027/1-559 FVRFCDAFNI PLITFVDVPG FLPGTAQEYG GIIRHGAKLL YAFAEATVPK ENSBTAP00000020252/1-539 FVRFCDSFNI PLITFVDVPG FLPGTAQEYG GIIRHGAKLL YAFAEATVPK 451 500 bmy_08884T0/1-314 VTVITRKAYG GAYDVMSSKH LCGDTNYAWP TAEIAVMGAK LVRLIQGAVE BACU019719/1-542 VTVITRKAYG GAYDVMSSKH LCGDTNYAWP TAEIAVMGAK ------GAVE ENSTTRP00000009894/1-541 VTVITRKAYG GAYDVMSSKH LCGDTNYAWP TAEIAVMGAK ------GAVE ENSP00000419027/1-559 VTVITRKAYG GAYDVMSSKH LCGDTNYAWP TAEIAVMGAK ------GAVE ENSBTAP00000020252/1-539 VTVITRKAYG GAYDVMSSKH LCGDTNYAWP TAEIAVMGAK ------GAVE 501 550 bmy_08884T0/1-314 IIFKGHENVE AAQAEYIEKF ANPFPAAVRG FVDDIIQPSS TRARICCDLD BACU019719/1-542 IIFKGHENVE AAQAEYIEKF ANPFPAAVRG FVDDIIQPSS TRARICCDLD ENSTTRP00000009894/1-541 IIFKGHENVE AAQAEYIEKF ANPFPAAVRG FVDDIIQPSS TRARICCDLD ENSP00000419027/1-559 IIFKGHENVE AAQAEYIEKF ANPFPAAVRG FVDDIIQPSS TRARICCDLD ENSBTAP00000020252/1-539 IIFKGHENVE AAQAEYIEKF ANPFPAAVRG FVDDIIQPSS TRARICCDLD 551 600 bmy_08884T0/1-314 VLASKKVQRP WRKHANIPL BACU019719/1-542 VLASKKVQRP WRKHANIPL ENSTTRP00000009894/1-541 VLASKKVQRP WRKHANIPL ENSP00000419027/1-559 VLASKKVQRP WRKHANIPL ENSBTAP00000020252/1-539 VLASKKVQRP WRKHANIPL