KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:45 2014 Check: 00 .. Name: BACU014313/1-345 Len: 578 Check: 4709 Weight: 1.00 Name: ENSP00000275227/1-456 Len: 578 Check: 9608 Weight: 1.00 Name: ENSBTAP00000020271/1-464 Len: 578 Check: 7595 Weight: 1.00 Name: bmy_05961T0/1-511 Len: 578 Check: 9795 Weight: 1.00 Name: ENSTTRP00000000570/1-457 Len: 578 Check: 6440 Weight: 1.00 // 1 50 BACU014313/1-345 MDSPGDPEGP HPPGGYREQR GRMYLWGLGR VSLTAIELAL AGFVCERFE- ENSP00000275227/1-456 MEALGDLEGP RAPG------ ---------- ---------- ---------- ENSBTAP00000020271/1-464 MDSPGDPEGP RPQG------ ---------- ---------- ---------- bmy_05961T0/1-511 MDSPGDPEGP RPPGGYREQR GRMYLWGLGR VSLTAIELAL AGFVCERFEK ENSTTRP00000000570/1-457 MDSSGDPEGP RPPG------ ---------- ---------- ---------- 51 100 BACU014313/1-345 ---------- ---KEGPGSG VR---RIISE LEIAFNSSSC CPNVKQDPHA ENSP00000275227/1-456 ---------- ---GDDPAGS AGETPGWLSR EQVFVLISAA SVNLGS---- ENSBTAP00000020271/1-464 ---------- ---GDGPPAG AMETSRRLSR EQIFVLISAA SINLGS---- bmy_05961T0/1-511 EGPDSGVRHV CLQGDGPPGG ARETSRRLSR EQIFVLISAA SINLGS---- ENSTTRP00000000570/1-457 ---------- ---GDGPPGG ARETSRQLSR EQIFVLISAA SINLGS---- 101 150 BACU014313/1-345 KSGIQLLLWY VIVGHPKSPS CFHRECGNLC KMEADMTAGT MTQAEKKGAS ENSP00000275227/1-456 ------MMCY SILG-PFFPK ---------- ---------- --EAEKKGAS ENSBTAP00000020271/1-464 ------MMCY SILG-PFFPK ---------- ---------- --EAEKKGAS bmy_05961T0/1-511 ------MMCY SILG-PFFPK ---------- ---------- --EAEKKGAS ENSTTRP00000000570/1-457 ------MMCY SILG-PFFPK ---------- ---------- --EAEKKGAS 151 200 BACU014313/1-345 NTVIGMIFGC YALFDLLASL VFGKY----- ---------- ---------- ENSP00000275227/1-456 NTIIGMIFGC FALFELLASL VFGNYLVHIG AKFMFVAGMF VSGGVTILFG ENSBTAP00000020271/1-464 NTVIGTIFGC YALFDFLASL VFGKYLVHIG AKFMFVAGMF VSGAVTVLFG bmy_05961T0/1-511 NTVIGMIFGC YALFDLLASL VFGKYLVHIG AKFMFVAGMF VSGGVTVLFG ENSTTRP00000000570/1-457 NTVIGMIFGC YALFNLLASL VFGKYLVHIG AKFMFVAGMS VSGGVTVLFG 201 250 BACU014313/1-345 ---------- ---------- ---------- ---------- ---------G ENSP00000275227/1-456 VLDRVPDGPV FIAMCFLVRV MDAVSFAAAM TASSSILAKA FPNNVATVLG ENSBTAP00000020271/1-464 LLDQVPEGPV FIAMCFLLRI TDAISFEAAI TASSSIVAKA FPNNVATVLG bmy_05961T0/1-511 VLDQVPEGPV FIAMCFLVRI TDAISFAAAI TASSSILAKA FPNNVATVMG ENSTTRP00000000570/1-457 VLDQVPEGPV FIAMCFLVRI IDAISFAAAI TASSSILAKA FPNNVATVMG 251 300 BACU014313/1-345 SLESFSGLGL VLGPPLGGFL YQSFGYEVPF ILLGCIVLLM VPLNMCILPN ENSP00000275227/1-456 SLETFSGLGL ILGPPVGGFL YQSFGYEVPF IVLGCVVLLM VPLNMYILPN ENSBTAP00000020271/1-464 SLETFSGLGL VLGPPLGGFL YQSFGYEVPF IFLGCIVLLM VPLNMCILPN bmy_05961T0/1-511 SLESFSGLGL VLGPPLGGFL YQSFGYEVPF ILLGCIVLLM VPLNMCILPN ENSTTRP00000000570/1-457 SVESFSGLGL VLGPPLGGLL YQSFGYEVPF ILLGCIVLLM VPLNMCILPN 301 350 BACU014313/1-345 Y-----ESDP GKHSFWKLII LPKVAFISFV ITSLSSGFGF LDPTLSLFVL ENSP00000275227/1-456 Y-----ESDP GEHSFWKLIA LPKVGLIAFV INSLSSCFGF LDPTLSLFVL ENSBTAP00000020271/1-464 YVFTPKESDK GKHSFWKLIT LPKVAFLSFV ITSFSSCFGF LDPTLSLFVL bmy_05961T0/1-511 Y-----ESDP GKHSFWKLII LPKVAFISFV ITSLSSGFGF LDPTLSLFVL ENSTTRP00000000570/1-457 Y-----ESDP GKHSFWKLII LPKVAFISFV ITSLSSGFGF LDPTLSLFVL 351 400 BACU014313/1-345 EKSAL----- ---VVGADIS H--------- ---------K WYLCWNEFNS ENSP00000275227/1-456 EKFNLPAGYV GLVFLGMALS YAISSPLFGL LSDKRPPLRK WLLVFGNLIT ENSBTAP00000020271/1-464 EKFNLPAGYV GLVFLGLALS YAISSPLVGL LSDKMPHLRK WLLVFGNLTL bmy_05961T0/1-511 EKFNLPAGYV GLVFLGLALS YAISSPLVGL LSDKMPHLRK WLLVFGNLIT ENSTTRP00000000570/1-457 EKFNLPAGYV GLVFLGLALS YAISSPLVGL LSDKMPHLRK WLLVFGNLIT 401 450 BACU014313/1-345 S----FPGDS QLCTRRS--- ---------- -TQGHRVTS- ---------E ENSP00000275227/1-456 AGCYMLLGPV PILHIKSQLW LLVLILVVSG LSAGMSIIPT FPEILSCAHE ENSBTAP00000020271/1-464 AGCYMLLGPA PFLHIKSQLW LLVLILVING ISAGIGLIPT FPEILSCAHE bmy_05961T0/1-511 AGCYMLLGPA PFLHIKSQLW LLVLILVING ISAGMSLIPT FPEILSCAH- ENSTTRP00000000570/1-457 AGCYMLLGPA PFLHIKSQLW LLVLILVING ISAGMSLIST FPEILSCAHE 451 500 BACU014313/1-345 NGFEEGLSTL GLVSGLFGAL WSVG------ ---------- ---------- ENSP00000275227/1-456 NGFEEGLSTL GLVSGLFSAM WSIG--AFMG PTLGGFLYEK IGFEWAAAIQ ENSBTAP00000020271/1-464 NGFEEGLSTL GLVSGLFGAM WSVGVSAFVG PTLGGFLYEK IGFEWAAALQ bmy_05961T0/1-511 ---------- ---------- ------AFLG PTLGGFLYEK IGFEWAAALQ ENSTTRP00000000570/1-457 NGFEEGLSTL GLVSGLFGAL WSVG--AFVG PTLGGFLYEK IGFEWAAALQ 501 550 BACU014313/1-345 ---------- ---------- ---------- ---------- -----SKLQN ENSP00000275227/1-456 GLWALISGLA MGLFYLLEYS RRKR------ ---------- -----SKSQN ENSBTAP00000020271/1-464 GLWALTSGLA MGLFYLLEHL RRRRR----- ---------- -----SELQN bmy_05961T0/1-511 GLWALTSGLV MGLFYLLEHS RRRRSPFALR TPEAGPLPAK HKWPVTRLPE ENSTTRP00000000570/1-457 GLWALTSGLV MGLFYLLEHS RRRRR----- ---------- -----SKLQN 551 600 BACU014313/1-345 ILGTEEERTA L--------- ---LPDET ENSP00000275227/1-456 ILSTEEERTT L--------- ---LPNET ENSBTAP00000020271/1-464 ILGTEEERTA L--------- ---LSDER bmy_05961T0/1-511 RYQDECDPSP LHSCALRKGP GLDLPG-- ENSTTRP00000000570/1-457 SLGTEEERTA L--------- ---LPDET