KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:57 2014 Check: 00 .. Name: ENSTTRP00000006992/1-398 Len: 402 Check: 3763 Weight: 1.00 Name: bmy_19068T0/1-219 Len: 402 Check: 7917 Weight: 1.00 Name: ENSP00000369055/1-398 Len: 402 Check: 9889 Weight: 1.00 Name: ENSBTAP00000020286/1-389 Len: 402 Check: 3993 Weight: 1.00 Name: BACU006649/1-361 Len: 402 Check: 7622 Weight: 1.00 // 1 50 ENSTTRP00000006992/1-398 MRFREPLLGG SAAMPGASLQ RACRLLVAVC ALHLGVTLVY YLVGRDLSRL bmy_19068T0/1-219 ERKKE----- ---------- RNADLTTAVT ---------- ---------- ENSP00000369055/1-398 MRLREPLLSG SAAMPGASLQ RACRLLVAVC ALHLGVTLVY YLAGRDLSRL ENSBTAP00000020286/1-389 ---------- ---MPGASLQ RACRLLVAVC ALHLGVTLVY YLAGRDLRRL BACU006649/1-361 MRFREPLLGG SAAMPGASLQ RACRLLVAVC ALHLGVTLVY YLVGRDLSRL 51 100 ENSTTRP00000006992/1-398 PQLVGVPTPL QGSSNGAAAI GQPSGELQPR GAAPPPPSRT SSKPRLGGAS bmy_19068T0/1-219 ---------- ------AAAA ATTAATLR-- ---------- ---------- ENSP00000369055/1-398 PQLVGVSTPL QGGSNSAAAI GQSSGELRTG GARPPPPLGA SSQPRPGGDS ENSBTAP00000020286/1-389 PQLVGVHPPL QGSSHGAAAI GQPSGELRLR GVAPPPPLQN SSKPRSRAPS BACU006649/1-361 PQLVGVPTPL QGSSNGAAAI GQPSGELRPR GAAPPPPLRT SSKPRLGGAS 101 150 ENSTTRP00000006992/1-398 NPDADS---- GPGLGSNLTS APVPPATALS LPACPEESPL LXXXXXXXXX bmy_19068T0/1-219 ---------- ---------- ---------- ---------- LISRFL---- ENSP00000369055/1-398 SPVVDS---- GPGPASNLTS VPVPHTTALS LPACPEESPL LVGPMLIEFN ENSBTAP00000020286/1-389 NLDAYSHPGP GPGPGSNLTS APVPSTTTRS LTACPEESPL LVGPMLIEFN BACU006649/1-361 NPDADSRPGP GPGPGSNLTS APVPPATALS LPACPEESPL LVGPMLIEFN 151 200 ENSTTRP00000006992/1-398 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_19068T0/1-219 ---------- ---------- ---------- ---------- ---------- ENSP00000369055/1-398 MPVDLELVAK QNPNVKMGGR YAPRDCVSPH KVAIIIPFRN RQEHLKYWLY ENSBTAP00000020286/1-389 IPVDLKLVEQ QNPKVKLGGR YTPMDCISPH KVAIIIPFRN RQEHLKYWLY BACU006649/1-361 IPVDLKLVEE QNPKVKVGGR YTPKDCISPH KVAIIIPFRN RQEHLKYWLY 201 250 ENSTTRP00000006992/1-398 XXXXXXXXXX XXXXXXXXXX AGESMFNRAK LLNVGFKEAL KDYGYNCFVF bmy_19068T0/1-219 FLH------- ---------Q AGESMFNRAK LLNVGFKEAL KDYEYNCFVF ENSP00000369055/1-398 YLHPVLQRQQ LDYGIYVINQ AGDTIFNRAK LLNVGFQEAL KDYDYTCFVF ENSBTAP00000020286/1-389 YLHPILQRQQ LDYGIYVINQ AGESMFNRAK LLNVGFKEAL KDYDYNCFVF BACU006649/1-361 YLHPILQRQQ LDYGIYVINQ AGESMFNRAK LLNVGFKEAL KDYEYNCFVF 251 300 ENSTTRP00000006992/1-398 SDVDLIPMND HNTYRCFSQP RHISVAMDKF GFSLPYVQYF GGVSALSKQQ bmy_19068T0/1-219 SDVDLIPMND RNTYRCFSQP RHISVAMDKF GFSLPYVQYF GGVSALSKQQ ENSP00000369055/1-398 SDVDLIPMND HNAYRCFSQP RHISVAMDKF GFSLPYVQYF GGVSALSKQQ ENSBTAP00000020286/1-389 SDVDLIPMND HNTYRCFSQP RHISVAMDKF GFSLPYVQYF GGVSALSKQQ BACU006649/1-361 SDVDLIPMND RNTYRCFSQP RHISVAMDKF GF-------- ---------- 301 350 ENSTTRP00000006992/1-398 FLTINGFPNN YWGWGGEDDD IFNRLAFKGM SVSRPSVVIG KCRMIRHSRD bmy_19068T0/1-219 FLTINGFPNN YWGWGGEDDD IFNRLAFKGM SVSRPNAVIG KCRMIRHSRD ENSP00000369055/1-398 FLTINGFPNN YWGWGGEDDD IFNRLVFRGM SISRPNAVVG RCRMIRHSRD ENSBTAP00000020286/1-389 FLSINGFPNN YWGWGGEDDD IYNRLAFRGM SVSRPNAVIG KCRMIRHSRD BACU006649/1-361 ---------- ---------- ---RLAFKGM SVSRPNAVIG KCRMIRHSRD 351 400 ENSTTRP00000006992/1-398 KKNEPNPQRF DRIAHTKETM LSDGLNTLTY LVLDVQRYPL YTKITVDIGT bmy_19068T0/1-219 KKNEPNPQRF DRIAHTKETM LSDGLNTLTY LVLDVQRFPL YTEITVDIGT ENSP00000369055/1-398 KKNEPNPQRF DRIAHTKETM LSDGLNSLTY QVLDVQRYPL YTQITVDIGT ENSBTAP00000020286/1-389 KKNEPNPQRF DRIAHTKETM LSDGLNSLTY MVLEVQRYPL YTKITVDIGT BACU006649/1-361 KKNEPNPQRF DRIAHTKETM LSDGLNTLTY LVLDVQRFPL YTEITVDIGT 401 450 ENSTTRP00000006992/1-398 PS bmy_19068T0/1-219 PS ENSP00000369055/1-398 PS ENSBTAP00000020286/1-389 PS BACU006649/1-361 PS