KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:58 2014 Check: 00 .. Name: ENSTTRP00000014858/1-1102 Len: 1239 Check: 9185 Weight: 1.00 Name: ENSP00000378260/1-1137 Len: 1239 Check: 4232 Weight: 1.00 Name: ENSBTAP00000020287/1-538 Len: 1239 Check: 4398 Weight: 1.00 Name: bmy_14757T0/1-958 Len: 1239 Check: 8158 Weight: 1.00 Name: BACU009991/1-647 Len: 1239 Check: 2388 Weight: 1.00 // 1 50 ENSTTRP00000014858/1-1102 ---------- ---------- -------IIQ SLGYNRLVLQ IGRGKVVPEP ENSP00000378260/1-1137 MKCVFVTVGT TSFDDLIACV SAPDSLQKIE SLGYNRLILQ IGRGTVVPEP ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 ---------- ---------- ---------- ---------- ---------- BACU009991/1-647 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000014858/1-1102 FSTESFILDV YRYKDSLKED LQKADLVISH AGAGSCLETL EERKPLIVVI ENSP00000378260/1-1137 FSTESFTLDV YRYKDSLKED IQKADLVISH AGAGSCLETL EKGKPLVVVI ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 ---------- ---------- ---------- ---------- ---------- BACU009991/1-647 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000014858/1-1102 NEKLMNNHQL ELAKQLHKDG HLFYCTCRVP TYPGPAFA-S PAPEKCQDCA ENSP00000378260/1-1137 NEKLMNNHQL ELAKQLHKEG HLFYCTCRVL TCPGQAKSIA SAPGKCQDSA ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 ---------- ---------- ---------- ---------- ---------- BACU009991/1-647 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000014858/1-1102 ALTPTAFSCL DFGLLSGYLH KQA-VTATHP TCTLLFPSCH TCVTFSPSPP ENSP00000378260/1-1137 ALTSTAFSGL DFGLLSGYLH KQALVTATHP TCTLLFPSCH AFFPLPLTPT ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 ---------- ---------- ---------- ---------- ---------- BACU009991/1-647 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000014858/1-1102 LCTMHKGWKK YCGQKSLNEA SMDEYLGSLG LFRKLTAKDA SCLFRAISEQ ENSP00000378260/1-1137 LYKMHKGWKN YCSQKSLNEA SMDEYLGSLG LFRKLTAKDA SCLFRAISEQ ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 ---MHKGWRK YCGQKSLNEA SMDEYLGSLG LFRKLTAKDA SCLFRAISEQ BACU009991/1-647 ---------- ---------- ---MPLASFG LFRS------ ---------- 251 300 ENSTTRP00000014858/1-1102 LFCSQVHHLE IRKACVSYMR ENQQTFES-- ----YVEGSF EKYLERLGDP ENSP00000378260/1-1137 LFCSQVHHLE IRKACVSYMR ENQQTFES-- ----YVEGSF EKYLERLGDP ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 LFCSQVHHLE IRKACVSYMR ENQQTFESFV LFLKYVEGSF EKYLERLGDP BACU009991/1-647 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000014858/1-1102 KESAGHLEIR ALSLIYN--- ---------- RDFILYRYPG RPPTHVTDNG ENSP00000378260/1-1137 KESAGQLEIR ALSLIYN--- ---------- RDFILYRFPG KPPTYVTDNG ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 KESAGHLEIR ALSLIYNYLF SSIFVFYPCS RDFILYRSPG RPPAHVTDNG BACU009991/1-647 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000014858/1-1102 YEDKILLCCS SNGHYDSVYS KQFQSSAAVC ---------- ---------Q ENSP00000378260/1-1137 YEDKILLCYS SSGHYDSVYS KQFQSSAAVC ---------- ---------Q ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 YEDKFTAITS HLPTPNKHTT YKFYSAIQVM VITIQCTQNN FSQVQLFVKA BACU009991/1-647 ---------- ---------- -RFYSAIQVM VITIQCTQNN FSQVQLFVKA 401 450 ENSTTRP00000014858/1-1102 AVLYEILYKD VFVVDEEELK TAVKLFRSGS KKNRNSAVTS SGDVHINYKS ENSP00000378260/1-1137 AVLYEILYKD VFVVDEEELK TAIKLFRSGS KKNRNNAVTG SEDAHTDYKS ENSBTAP00000020287/1-538 ---------- ---------- -------MPS RKGRS----- ---------- bmy_14757T0/1-958 SVLYEILYKD VFVVDEEELK TAVELFRSSS KKNRNNAVTS SGDVHIDYKS BACU009991/1-647 SVLYEILYKD VFVVDEEELK TAVELFRSSS KKNRNNAVTS SGDVHIDYKS 451 500 ENSTTRP00000014858/1-1102 STQDRTEEWG ACCXXXXXXX XXXXXXXXXX TPENPSKMLF PYKVLKALDP ENSP00000378260/1-1137 SNQNRMEEWG ACYNAENIPE GYNKGTEETK SPENPSKMPF PYKVLKALDP ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 STPDRTEECG ARCNVENIPE GYNQGTEEAK SPENPPKMLF PYKVLKALDP BACU009991/1-647 STPDRTEECG ARCNVENIPE GYNQGTEEAK SPENPPKMLF PYKVLKALDP 501 550 ENSTTRP00000014858/1-1102 EIYRNVEFDV WLDSRKELQK SDYMEYAGRQ YYLGDKCQVH LESGGRYYNA ENSP00000378260/1-1137 EIYRNVEFDV WLDSRKELQK SDYMEYAGRQ YYLGDKCQVC LESEGRYYNA ENSBTAP00000020287/1-538 --YQKI---- ---------- ---------- ---------- --SGG----- bmy_14757T0/1-958 AIYRNVEFDV WLDSKRELQK SDYMEYSGRQ YYVGDKCQVH LESGGRYYNA BACU009991/1-647 AIYRNVEFDV WLDSKRELQK SDYMECSGRQ YYVGDKCQVH LESGGRYYNA 551 600 ENSTTRP00000014858/1-1102 HIQEVGNESN SVTVFIEELA DKYVVPLANL KPVTQVTPGP AGNVIPSRKG ENSP00000378260/1-1137 HIQEVGNENN SVTVFIEELA EKHVVPLANL KPVTQVMSVP AWNAMPSRKG ENSBTAP00000020287/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14757T0/1-958 HIQEVGNERN SVTVFIEELA EKHVVPLANL KPVTQVTPVP AWNVTPSRKG BACU009991/1-647 HIQEVGNERN SVTVFIEELA E--------- ---------- ---------- 601 650 ENSTTRP00000014858/1-1102 RGYQKISWGC VPEMAMSEMD VKQRRKMFKK IRGKEVYMTM AYSRGDPLLP ENSP00000378260/1-1137 RGYQKMPGGY VPEIVISEMD IKQQKKMFKK IRGKEVYMTM AYGKGDPLLP ENSBTAP00000020287/1-538 ---------Y IPEIAMSEMD MKQRKKMFKK VRGKEVYMTM AYSRAEPLLP bmy_14757T0/1-958 RGYQKIPWDC VPEMAMSEMD MKQRRKMFKK IRGKEVYMTM AYSRGDPLLP BACU009991/1-647 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000014858/1-1102 PRLQHSMRYG HDSPMHYSQT AGGVTSNEHF HPQHSSQGQG RGYGMPRDSP ENSP00000378260/1-1137 PRLQHSMHYG HDPPMHYSQT AGNVMSNEHF HPQHPSPRQG RGYGMPRNSS ENSBTAP00000020287/1-538 PRLQHSMHYG HGPPMHYSQT TGNVMSNEHF HPQHSSQRQG RGYGMPRDSS bmy_14757T0/1-958 PRLQHSMRYG HDSPMHYSQT ADGVMSNEHF HPQHSSQGQG QGYGMPRDSP BACU009991/1-647 -KLQHSMHYE HDSPMHYSQT ADGVMSNEHF HPQHSSPGQG QGYGMPRDSP 701 750 ENSTTRP00000014858/1-1102 RFINRHNMAS PKVAFYPGPG KRCCQSYDNF SYRSRSFRRS HRQMHCMNKE ENSP00000378260/1-1137 RFINRHNMPG PKVDFYPGPG KRCCQSYDNF SYRSRSFRRS HRQMSCVNKE ENSBTAP00000020287/1-538 RFINRHNMAG PKVGFYPGPG KRCCQSYDNF -YRSRSFRRS HRQMHCMNKE bmy_14757T0/1-958 RFINRHNMAG PKVGFYPGAG KRCCQSYDNF SYRSRSFRRS HRQMHCMNKE BACU009991/1-647 RFINRHNMAG PKVGFYPGPG KRCCQSYDNF SYRS---RRS HRHMHCMNKE 751 800 ENSTTRP00000014858/1-1102 CQFSFVPENG QIPRGLEETI TFYEVEEGDE TAYPTLPNHG GPSTMVPATS ENSP00000378260/1-1137 SQYGFTPGNG QMPRGLEETI TFYEVEEGDE TAYPTLPNHG GPSTMVPATS ENSBTAP00000020287/1-538 CQFSFAPE-- -MPRGLEETI TFYEVEEGDE TAYPALPNHG GPSTMVPASS bmy_14757T0/1-958 CQFSFVPENG QMPRGLEETI TFYEVEEGDE TAYPTLPNHG GPSTMVPDAS BACU009991/1-647 CQFSFVPENG QMPRGLEETI TYYEVEEGDE TAYPTLPNHG GPSTMVPAAS 801 850 ENSTTRP00000014858/1-1102 RYHVARRGHS SGKQTLNSEE GDGQNDNGGY HEEYIYPSEQ DYETSGVYST ENSP00000378260/1-1137 GYCVGRRGHS SGKQTLNLEE GNGQSENGRY HEEYLYRAEP DYETSGVYST ENSBTAP00000020287/1-538 RYCVARRGHS SGKQPLNSEE GDGQSDSGGY H--------- ---------- bmy_14757T0/1-958 RYHVARRGHS SGRQTLNSEE GDGQSDNGHY TVKTFSSLHR SSVSFDLEDI BACU009991/1-647 RYHVASRGHS PGRQTLNSEE GDGQSDNGGY H--------- ---------- 851 900 ENSTTRP00000014858/1-1102 TESTANL-SL QDRRPCPMSP HDTVTSYNYP QK-------- ---------V ENSP00000378260/1-1137 TASTANL-SL QDRKSCSMSP QDTVTSYNYP QK-------- ---------- ENSBTAP00000020287/1-538 ---------- ---------- ----EDYIYP SEPDYDTSGV YSTAESTANL bmy_14757T0/1-958 MKNIFILQSL EDRRRCSMSP HDAVTSYNYP QK-------- ---------V BACU009991/1-647 ---------- ---------- ----EEYIYP SE-------- ---------- 901 950 ENSTTRP00000014858/1-1102 VMVNSAAVAA SCANIVPAPV LPNCAAANQA SSTTSI-SSQ NAIQPLFVSP ENSP00000378260/1-1137 MMGNIAAVAA SCANNVPAPV LSNGAAANQA ISTTSV-SSQ NAIQPLFVSP ENSBTAP00000020287/1-538 VMVNSAAVAA SCANNVPAPV LPNCAAANQA SSTTSV-SSQ NAIQPLFVSP bmy_14757T0/1-958 VMVNSAAVAA SCANIVPAPV LPNCAAANQA SSTISI-SSQ NAIQPLFVSP BACU009991/1-647 ---------- ---------- --------QG YETSGVYSTT ESTANLF--- 951 1000 ENSTTRP00000014858/1-1102 PTQGRPXXXX XXXXXXXX-- ---------- -XXXXXXXXX XXXXXXXXXX ENSP00000378260/1-1137 PTHGRPVIAS PSYPCHSAIP HAGASLPPPP PPPPPPPPPP PPPPPPPPPP ENSBTAP00000020287/1-538 PTQGRPVIAS PSYPYLSA-- ---------- -PIPAAAGPL PPPPPPLPPP bmy_14757T0/1-958 PTQGRPVIAS ASYPYLAA-- ---------- -PIPAAAASL PPPPPPPPPP BACU009991/1-647 ---------- ---------- ---------- ---PAAAASL PPPPPPPPP- 1001 1050 ENSTTRP00000014858/1-1102 XXXXXXXXXX XXXXXXXXXX XTDTSNL--- -PSLP--YSC DPCGSDLPQD ENSP00000378260/1-1137 PPPA------ --------LD VGETSNLQPP PPLPPPPYSC DPSGSDLPQD ENSBTAP00000020287/1-538 TPPS------ --------LE VGEASNL--- -ALPPPPYSC DPSGSDLPQD bmy_14757T0/1-958 PPP------- --------LE VREASNL--- -PSLPPPYSC DPRGSDLPQD BACU009991/1-647 ---------- --------FE VREISNL--- -PSLPPPYSC DPCGSDLPQD 1051 1100 ENSTTRP00000014858/1-1102 AKVLQYYFNL GLXXXXXXXX XXXXXXXXX- ----XXXXXX XXXXXXXXXX ENSP00000378260/1-1137 TKVLQYYFNL GLQCYYHSYW HSMVYVPQM- --QQQLHVEN YPVYTE-PPL ENSBTAP00000020287/1-538 TKVLQYYFNL GLQCYHHSFW HSMVYVPQM- -QQQQLHAEN YPVYTEPPPL bmy_14757T0/1-958 ANVLQYYFNL GLQCYHHSLW HSMVCVPQM- QQQQQLHVEN YPVYTEPPPL BACU009991/1-647 ANVLQYYFNL GLQCHHHSLW HSMVCVPQME QQQQQLHVEN YPVYTEPPPL 1101 1150 ENSTTRP00000014858/1-1102 XXXXXXXXXX XXXXXXXXXX XXXXXXTFPN ADPASVPHGA FYYPVMSDPC ENSP00000378260/1-1137 VDQTVPQCYS EVRREDGIQA EASANDTFPN ADSSSVPHGA VYYPVMSDPY ENSBTAP00000020287/1-538 VDQTIPQLYS EVERQDGTQA EVSANGTFPN ADPASVPHGA VYYPVMSDPY bmy_14757T0/1-958 VNQTIPQLYS EVGRRDGTQA DVSAHGTFPN ADPASVPHGA FYYPVMSDPY BACU009991/1-647 VNQTIPQLYS EVGGRDGTQA DVSAHGTFPN ADPASVPHGA FYYPVMSGPY 1151 1200 ENSTTRP00000014858/1-1102 GQRPLPGFDS CLPVVPDYPC VAPWHPVSAA YVGS-QIRGA MSPGPLAYIA ENSP00000378260/1-1137 GQPPLPGFDS CLPVVPDYSC VPPWHPVGTA YGGSSQIHGA INPGPIGCIA ENSBTAP00000020287/1-538 GQPPLPGFDS CLPVVPDYPY VAPWHPVGAA YGGSPQIHGA MNPGPLGYIA bmy_14757T0/1-958 GQRPLPGFDS CLPVVPDYPC VAPWHPVGAA YVGS-QIRGA MSPGPLAYIA BACU009991/1-647 GQQPLPGFDS CLPVVPDYPC VAPWHPVGAA YVGS-QISGA MSPGPLAYIA 1201 1250 ENSTTRP00000014858/1-1102 SPPSPSHCVP QNM------- ---------- --------- ENSP00000378260/1-1137 PSPPASHYVP QGM------- ---------- --------- ENSBTAP00000020287/1-538 APPSASHYVP QNM------- ---------- --------- bmy_14757T0/1-958 SPPSPSHYVP QNM------- ---------- --------- BACU009991/1-647 SPPSPSHYVP QNXXXXXXXM TCSCTAIFLV VWFLKSVLC