KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:59 2014 Check: 00 .. Name: bmy_21984T0/1-487 Len: 709 Check: 4080 Weight: 1.00 Name: ENSP00000306920/1-677 Len: 709 Check: 3914 Weight: 1.00 Name: ENSBTAP00000020296/1-653 Len: 709 Check: 4498 Weight: 1.00 Name: BACU014645/1-683 Len: 709 Check: 5655 Weight: 1.00 Name: ENSTTRP00000015910/1-658 Len: 709 Check: 2373 Weight: 1.00 // 1 50 bmy_21984T0/1-487 ---------- ---------- MRRVEVLMWF -------RP- ---------- ENSP00000306920/1-677 ---------- ------MPGF LVRILPLLLV LLLLGPTRG- ---------- ENSBTAP00000020296/1-653 ---------- ------MPG- VVRLLALLLV PLLLGSARG- ---------- BACU014645/1-683 MLSDWLCSWA FGVGGGVEGW EHCVICIMYN TLVGGGGTAW KAVGFDLFGI ENSTTRP00000015910/1-658 ---------- ------MPG- VVRILSLLLV PLLLGSARG- ---------- 51 100 bmy_21984T0/1-487 --CSNASQRT FEIDYGHNCF LKDGQPFRYI SGSIHYFRVP RFYWKDRLLK ENSP00000306920/1-677 --LRNATQRM FEIDYSRDSF LKDGQPFRYI SGSIHYSRVP RFYWKDRLLK ENSBTAP00000020296/1-653 --LHNATQRT FQIDYRRNRF LKDGQPFRYI SGSIHYFRVP RFYWKDRLLK BACU014645/1-683 AFYSNASQRT FEIDYGHNCF LKDGQPFRYI SGSIHYFRVP RFYWKDRLLK ENSTTRP00000015910/1-658 --LHNASQRT FEIDYGHNCF LKDGQPFRYI SGSIHYFRVP RFYWKDRLLK 101 150 bmy_21984T0/1-487 MKMAGLNAIQ TYVAWNFHEP RPGQYEFTGD HDVEHFIQLA HDLGLLVILR ENSP00000306920/1-677 MKMAGLNAIQ TYVPWNFHEP WPGQYQFSED HDVEYFLRLA HELGLLVILR ENSBTAP00000020296/1-653 MKMAGLNAIQ TYVAWNFHEL QPGRYNFSGD HDVEHFIQLA HELGLLVILR BACU014645/1-683 MKMAGLNAIQ TYVAWNFHEP QPGQYEFTGD HDVEHFIQLA HELGLLVILR ENSTTRP00000015910/1-658 MKMAGLNAIQ TYVAWNFHEP QPGQYEFTGD HDVEHFIQLA HELGLLVILR 151 200 bmy_21984T0/1-487 PGPYICAEWD MGGLPAWLLE KESIVLRSCD PDYLAAVDKW LGVLLPKMRP ENSP00000306920/1-677 PGPYICAEWE MGGLPAWLLE KESILLRSSD PDYLAAVDKW LGVLLPKMKP ENSBTAP00000020296/1-653 PGPYICAEWD MGGLPAWLLE KKSIVLRSSD PDYLAAVDKW LGVLLPKMRP BACU014645/1-683 PGPYICAEWD MK-------K ACDGVKPGCL PDYLAAVDKW LGVLLPKMRP ENSTTRP00000015910/1-658 PGPYICAEWD MGGLPAWLLE NESIVLRSSD PDYLAAVDKW LGILLPKMRP 201 250 bmy_21984T0/1-487 LLYQNGGPII TVQVENEYGS YYTCDYNYLR FLQKRFQYHL GEDVLLFTTD ENSP00000306920/1-677 LLYQNGGPVI TVQVENEYGS YFACDFDYLR FLQKRFRHHL GDDVVLFTTD ENSBTAP00000020296/1-653 LLYKNGGPII TVQVENEYGS YLSCDYDYLR FLQKRFHDHL GEDVLLFTTD BACU014645/1-683 LLYQNGGPII TVQVENEYGS YYTCDYNYLR FLQKRFQYHL GEDVLLFTTD ENSTTRP00000015910/1-658 LLYQNGGPII TMQVENEYGS YYTCDYNYLR FLQKRFHYHL GEDVLLFTTD 251 300 bmy_21984T0/1-487 GVHERLLQCG ALQGLYATVD FGAGVNITAA FLIQRKSEPK GPLVNSEFYT ENSP00000306920/1-677 GAHKTFLKCG ALQGLYTTVD FGTGSNITDA FLSQRKCEPK GPLINSEFYT ENSBTAP00000020296/1-653 GVNERLLQCG ALQGLYATVD FSPGTNLTAA FMLQRKFEPT GPLVNSEFYT BACU014645/1-683 GVHERLLQCG ALQGLYATVD FGAGVNITAA FLIQRKSEPK GPLVNSEFYT ENSTTRP00000015910/1-658 GAHESFLKCG ALQGLYATVD FGAGVNVTAA FLIQRKSEPK GPLXXXXXXX 301 350 bmy_21984T0/1-487 -GWLDHWGQP HSTVKTKVVA SSLHDILSQG ASVNMYMFIG GTNFAYWNGA ENSP00000306920/1-677 -GWLDHWGQP HSTIKTEAVA SSLYDILARG ASVNLYMFIG GTNFAYWNGA ENSBTAP00000020296/1-653 -GWLDHWGQR HSTVSSKAVA FTLHDMLALG ANVNMYMFIG GTNFAYWNGA BACU014645/1-683 -GWLDHWGQP HSTVKTEVVA SSLHDILSRG ASVNMYMFIG GTNFAYWNGA ENSTTRP00000015910/1-658 HGWLDHWGQP HSTVKTKTVA SSLHDILSRG ASVNMYMFIG GTNFAYWNGA 351 400 bmy_21984T0/1-487 NTPYQAQPTS YDYDAPLSEA GDLSEKYFAV RDVIQQ---I KLGLFPVSSP ENSP00000306920/1-677 NSPYAAQPTS YDYDAPLSEA GDLTEKYFAL RNIIQKFEKV PEGPIPPSTP ENSBTAP00000020296/1-653 NIPYQPQPTS YDYDAPLSEA GDLTEKYFAL RDIIQKFAKI PEGPIPPSTP BACU014645/1-683 NTPYQAQPTS YDYDAPLSEA GDLSEKYFAV RDVIQQFEKV PEGPIPPSTP ENSTTRP00000015910/1-658 NMPYQAQPTS YDYDAPLSEA GDLSEKYFAV RDVIQQFEKV PEGPIPPSTP 401 450 bmy_21984T0/1-487 PSSEGGGGIG PLLHNPPAWT ILLSHSGP-- ---------- ---------- ENSP00000306920/1-677 KFAYGKVTLE KLKTVGAALD I-LCPSGPIK SLYPLTFIQV KQHYGFVLYR ENSBTAP00000020296/1-653 KFAYGKVALN KLKTVEDALN I-LCPSGPIK SVYPLTFIDV KQYFGFVLYR BACU014645/1-683 KFAYGKVGLK KLKTVEEALN L-LCPSGPIK SVYPLTFIQV KQYFGFVLYR ENSTTRP00000015910/1-658 KFAYGKVGLK KXXXXXXXXX X-XXXXXXXX XXXXXXXXXX XXYFGFVLYR 451 500 bmy_21984T0/1-487 ETRQEDCE-- --LQCALAG- ---------- ---------- ------TGIC ENSP00000306920/1-677 TTLPQDCSNP APLSSPLNGV HDRAYVAVDG IPQGVLERNN VITLNITGKA ENSBTAP00000020296/1-653 TMLPEDCSDP TPLSSPLSGV HDRAYVSVNG VAQGVLERES VITLNITGKA BACU014645/1-683 TTLPQDCSNP TPLSSPFNGV HDRAYVSVDG VPHGVLERDI VITLNITGKA ENSTTRP00000015910/1-658 TTLPQDCSDP TPLSSPFNGV HDRAYVSVDG VPHGVLERNI VITLNITGKA 501 550 bmy_21984T0/1-487 TSSLNWTFNY L--------- ---------- --------HF SIYTLVSSP- ENSP00000306920/1-677 GATLDLLVEN MGRVNYGAYI NDFKGLVSNL TLSSNILTDW TIFPLDTEDA ENSBTAP00000020296/1-653 GATLDLLVEN MGRVNYGSSI NDFKGLVSNL TLGSKILTNW EIFPLDMEDA BACU014645/1-683 GAALDLLVEN MGRVNYGSSI NDFKGLISNL TLASKILTDW EIFPLDMEDA ENSTTRP00000015910/1-658 GATLDLLVEN MGRVNYGNSI NDFKGLISNL TLDSNILTNW EIFPLDMEDA 551 600 bmy_21984T0/1-487 ---HL-VWKR E--------- ---------- ---VNNF--- ---------- ENSP00000306920/1-677 VCSHLGGWGH RDSGHHDEAW AHNSSNYTLP AFYMGNFSIP SGIPDLPQDT ENSBTAP00000020296/1-653 VRSHLGTWGG RDRGYHNKAR AHSPLTYALP TFYVGNFTIP SGIADLPQDT BACU014645/1-683 VCNHLGTWDG HDSGC----- AHSASDYTLP AFYVANFSIP SGIPDLPQDT ENSTTRP00000015910/1-658 VRSHLGTWDG HDSGC----- AHSPSDYTLP AFYVANFSIP SGIPDLPQDT 601 650 bmy_21984T0/1-487 --------KS ELFLMSLCRC SRQWFVR--- ---WYSKYLS ASRKRNGIIN ENSP00000306920/1-677 FIQFPGWTKG QVWINGF-NL GRYWPARGPQ LTLFVPQHIL MTSAPNTITV ENSBTAP00000020296/1-653 FIQFPGWTKG QVWINGF-NL GRYWPVRGPQ MTLFVPQHIL VTSTPNTIVV BACU014645/1-683 FIQFSGWTKG QVWINGF-NL GRYWPARGPQ MTLFVPQHIL VTSAPNTIIV ENSTTRP00000015910/1-658 FIQFSGWTKG QVWINGF-NL GRYWPARGPQ MTLFVPQHIL VTSAPNTIIM 651 700 bmy_21984T0/1-487 TPIYSSSCLF PSPKT----- ---------- ---------- ---------- ENSP00000306920/1-677 LELEWAPCSS DDPELCAVTF VDRPVIGSSV TYDHPSKPVE KRLMPPPPQK ENSBTAP00000020296/1-653 LELEHAPCQD GSLELCTVEF VDKPVFRTVQ TH-------- ---------- BACU014645/1-683 LELERAPCGH GGPELCTVEF VDRPVIRAVK THSR------ -----VPADQ ENSTTRP00000015910/1-658 LELERAPCGD GGPELCTVEF VDRPVLGAAK AHSR------ ------PC-- 701 750 bmy_21984T0/1-487 --------- ENSP00000306920/1-677 NKDSWLDHV ENSBTAP00000020296/1-653 RHAN----- BACU014645/1-683 HQDSWLDRV ENSTTRP00000015910/1-658 RHDSWLDHV