KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:00 2014 Check: 00 .. Name: ENSTTRP00000000484/1-778 Len: 1008 Check: 3262 Weight: 1.00 Name: ENSP00000458715/1-1004 Len: 1008 Check: 1458 Weight: 1.00 Name: ENSBTAP00000020297/1-998 Len: 1008 Check: 7098 Weight: 1.00 Name: bmy_02281T0/1-986 Len: 1008 Check: 3060 Weight: 1.00 Name: BACU011592/1-998 Len: 1008 Check: 5779 Weight: 1.00 // 1 50 ENSTTRP00000000484/1-778 ---------- ---------- ---------- ---------- ---------- ENSP00000458715/1-1004 MGELCRRDSA LTALDEETLW EMMESHRHRI VRCICPSRLT PYLRQAKVLC ENSBTAP00000020297/1-998 MAELCRTDSS LTSLDEEVLW EMMEDHRCRI VRSIFPSRLT PYLRQAKVLD bmy_02281T0/1-986 MAELCRTDSS LTTLDEEMLW EMMEDHRCRI VRSICPSRLT PYLRQAKVLD BACU011592/1-998 MAELCRRDSS LTALDEEMLW ELMEDHRCRI VRSICPSRLT PYLRQAKVLD 51 100 ENSTTRP00000000484/1-778 ---------- ---------- ---------- ---------- ---------- ENSP00000458715/1-1004 QLDEEEVLHS PRLTNSAMRA GHLLDLLKTR GKNGAIAFLE SLKFHNPDVY ENSBTAP00000020297/1-998 QLDEEEVLHS PRFNNTAMRV GYLLDLLKTR GKNGAIAFLE SLKFHNPDVY bmy_02281T0/1-986 QLDEEEVLHS PRFTNTAMRV GHLLDLLKTR GKNGAIAFLE SLKFHNPDIY BACU011592/1-998 QLDEEEVLHS PRFTNTAMRV GHLLDLLKTR GKNGAIAFLE SLKFHNPDVY 101 150 ENSTTRP00000000484/1-778 ---------- ---------- ---------- ---------- ---------- ENSP00000458715/1-1004 TLVTGLQPDV DFSNFSGLME TSKLTECLAG AIGSLQEELN QEKGQKEVLL ENSBTAP00000020297/1-998 TLVTGLQPSV DFTNFSGLME TSKLTECLAG AIGSLQEELS QEKGQKEALL bmy_02281T0/1-986 TLVTGLQPSV DFTNFSGLME TSKLTECLAG AIGSLQEELS QEKGQKEALL BACU011592/1-998 TLVTGLQPSV DFTNFSGLME TSKLTECLAG AIGSLQEELS QEKGQKEALL 151 200 ENSTTRP00000000484/1-778 ---------- ---------- ---------- ---------- ---------- ENSP00000458715/1-1004 RRCQQLQEHL GLAETRAEGL HQLEADHSRM KREVSAHFHE VLRLKDEMLS ENSBTAP00000020297/1-998 RQCQQLQERL DQAEARAEGL RQLEADHSRM KREVSAHFHE VLKLKDEMLS bmy_02281T0/1-986 RQCQQLQEHL GQAEARAEGL RQLEADHGRM KREVSAHFHE VLKLKDEMLS BACU011592/1-998 RQCQQLQEHL GQAEARAEGL RQLEADHGRM KREVSAHFHE VLKLKDEMLS 201 250 ENSTTRP00000000484/1-778 ---------- ---------- -----LYLMK QELQREKMSS SCEREFQERS ENSP00000458715/1-1004 LSLHYSNALQ EKELAASRCR SLQEELYLLK QELQRANMVS SCELELQEQS ENSBTAP00000020297/1-998 LSLHYSNALQ EKELATTRCR SLQEELYLMK QELQREKMSS SCEREFRERS bmy_02281T0/1-986 LSLHYSNALQ EKDLAATRCR GLQEELYLMK QELQREKTSS SCEREFRERS BACU011592/1-998 LSLHYSNALQ EKDLAATRCR GLQEELYLMK QELQREKMSS SCEREFQERS 251 300 ENSTTRP00000000484/1-778 LKMTNELEPG DEELSRLKEE NERLRSLTFS LAEKDILEQN LDEALESMQE ENSP00000458715/1-1004 LRTASDQESG DEELNRLKEE NEKLRSLTFS LAEKDILEQS LDEARGSRQE ENSBTAP00000020297/1-998 LKMASDLEPG DEELSRLKEE NERLRSLTFS LAEKDILEQN LDEALESRQE bmy_02281T0/1-986 LKMTNDLEPG DEELSRLKEE NERLRSLTFS LAEKDILEQN LDEALESRQE BACU011592/1-998 LKMTNDLEPG DEELSRLKEE NERLRSLTFS LAEKDILEQN LDEALESRQE 301 350 ENSTTRP00000000484/1-778 LVNRIHSLRE RAMAAERQRK QYWEEKEQTL LQFQKTKVDC EMYREKVNVL ENSP00000458715/1-1004 LVERIHSLRE RAVAAERQRE QYWEEKEQTL LQFQKSKMAC QLYREKVNAL ENSBTAP00000020297/1-998 LVDRIHSLRE RAVAAERQRK QYWEEKEQTL LQFQKTKVDC EIYKEKMNAL bmy_02281T0/1-986 LVNRIHSLRE RAMAAERQRK QYWEEKEQTL LQFQKTKVDC EIYKEKMNVL BACU011592/1-998 LVNRIHSLRE QAMAAERQRK QYWEEKEQTL LQFQKTKVDC EIYKEKMNVL 351 400 ENSTTRP00000000484/1-778 QSQVVELQKE RDQAYSARDG SQMEISQNLA EKDALRRKVF ELTDQVCELR ENSP00000458715/1-1004 QAQVCELQKE RDQAYSARDS AQREISQSLV EKDSLRRQVF ELTDQVCELR ENSBTAP00000020297/1-998 QSQVVELQKE RDQAYSARDG AQMEISQNLT EKDALRRKVF ELMDQVCELR bmy_02281T0/1-986 QSQVVELQKE RDQAYSARDG SQLEMSQNLA EKDALRRKVF ELTDQVCELR BACU011592/1-998 QSQVVELQKE RDQAYSARDG SQLEMSQNLA EKDALRRKVF ELTDQVCELR 401 450 ENSTTRP00000000484/1-778 QQVQRLQVQA ESLPGP-KQE AGAREPCLKR KQRLVRMFAL CPWDDSDG-- ENSP00000458715/1-1004 TQLRQLQAEP ---PGVLKQE ARTREPCPRE KQRLVRMHAI CPRDDSDCSL ENSBTAP00000020297/1-998 QQVQRLRVQA DSSPGP-KQE VGAREPCPKG KQRLVRMFAL CPRDDSNG-- bmy_02281T0/1-986 QQVQRLQAQA ESLPGP-KQE AGAREPCPKR KQQLVRMFAL CPWDDSDG-- BACU011592/1-998 QQVQRLQAQA ESLPGP-KQE TGAREPYPKR KQQLVRMFAL CPWDDSDG-- 451 500 ENSTTRP00000000484/1-778 -SSSESQLWS DLSATSSREL VDSFHSSSPV PPSQQFLYKR ATEDFWEDPS ENSP00000458715/1-1004 VSSTESQLLS DLSATSSREL VDSFRSSSPA PPSQQSLYKR VAEDFGEEPW ENSBTAP00000020297/1-998 -SSSESQLWS DLSATSSREL VDSFRSSSPA PPSQQSLCKR ATEDFWEDPC bmy_02281T0/1-986 -SSSESQLWS DLSATSSREL VDSFHSSSPV PPSQQSLYKR AAEDFWEDPS BACU011592/1-998 -SSSESQLWS DLSARSSREL VDSFHSSSPV PPSQQSLYKR AAEDFWEDPS 501 550 ENSTTRP00000000484/1-778 SFSGCPKTLE VDQGGSLGAK KGDADLDYEI VDRAXXXXXX XXXXXXXXXX ENSP00000458715/1-1004 SFSSCLEIPE GDPGALPGAK AGDPHLDYEL LDTADLPQLE SSLQPVSPGR ENSBTAP00000020297/1-998 FSSGCPEILE VDQGGSLGAK KSNADLDFEI VDRADLPESE NSLQP-SSGD bmy_02281T0/1-986 SFSGCPKTLE VDQGGSLGAK KGDADLDYEI VDRADLSESE NSLQL-SSGD BACU011592/1-998 SFSGCPKTLE VDQGGSLGAK KGDADLDYEI VDRADLPESE NSLQL-SSGG 551 600 ENSTTRP00000000484/1-778 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000458715/1-1004 LDVSESGVLM RRRPARRILS QVTMLAFQGD ALLEQISVIG GNLTGIFIHR ENSBTAP00000020297/1-998 LYLSASCFPV RRRPARKILS QVTVLAFQGD ALLEQISVIG GNLTGIFIHR bmy_02281T0/1-986 LHLSASSVLV RRRPARKILG QVTVLAFQGD ALLEQISVIG GNLTGIYIHR BACU011592/1-998 LHLSASSVPV RRRPARKILG QVTVLAFQGD ALLEQISVIG GNLTGIYIHR 601 650 ENSTTRP00000000484/1-778 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000458715/1-1004 VTPGSAADQM ALRPGTQIVM VDYEASEPLF KAVLEDTTLE EAVGLLRRVD ENSBTAP00000020297/1-998 VTPGSAADEM ALRSGTQIVM VDYEATEPSS KAVLEGMTLE RAVGLLQRVN bmy_02281T0/1-986 VTPGSAADEM ALCPGTQIMM VDYEATEPLS KAVLEGMTLD RAVRLLQRVN BACU011592/1-998 VTPGSAADEM ALCPGTQIMM VDYEATDPLS KAVLEGMTLD RAVRLLQRVN 651 700 ENSTTRP00000000484/1-778 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000458715/1-1004 GFCCLSVKVN TDGYKRLLQD LEAKVATSGD SFYIRVNLAM EGRAKGELQV ENSBTAP00000020297/1-998 GFCCLSVKVN MEGYKKLVQD LEAKVATSGD SFYIRVNLAL EGRAEGELQV bmy_02281T0/1-986 GFCCLSVKVN MEGYKKLVQD LKAKVATSGD SFYIRVNLAL ERRAEGELQV BACU011592/1-998 GFCCLSVKVN MEGYKKLVED LKAKVATSGD SFYIRVNLAL ERRAEGELQV 701 750 ENSTTRP00000000484/1-778 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000458715/1-1004 HCNEVLHVTD TMFQGCGCWH AHRVNSYTMK DTAAHGTIPN YSRAQQQLIA ENSBTAP00000020297/1-998 RCNDILHVTD TLFQGSSCWH AHRVGPYSTK GT-KHGTIPN YTRAQQLLIA bmy_02281T0/1-986 HCNDILHVTD TLFQGGSCWH AHRVGPYSTK GT-EQGTIPN YARAQQLLIA BACU011592/1-998 HCNDILHVTD TLFQGGSCWH AHRVGPYSTK GT-EQGTIPN YAQAQQLLIA 751 800 ENSTTRP00000000484/1-778 XXXXXXXXXX XXXXQPSGGA QKLVRIVGMD RTKASPLWSS FDGGQLDPSQ ENSP00000458715/1-1004 LIQDMTQQCT VTRKPSSGGP QKLVRIVSMD KAKASPLRLS FDRGQLDPSR ENSBTAP00000020297/1-998 LLQDMAHQST VTRKQSSGGA QKLVRIVSMD RTKASPLWSS FEGSQLDPSR bmy_02281T0/1-986 LIQDMAHQST MARKQPSAGA QKLVRIVSMD RTKASPLWSS FDGGQADPSQ BACU011592/1-998 LIQDMAHRST MARKQPSAGA QKLVRIVSMD RTKASPLWSS FDGGQSDPSQ 801 850 ENSTTRP00000000484/1-778 VEDPSTVCFW AESYFTLVPY TPVHSHRPSR PRPVLFVPRV VGKILMEKLC ENSP00000458715/1-1004 MEGSST-CFW AESCLTLVPY TLVRPHRPAR PRPVLLVPRA VGKILSEKLC ENSBTAP00000020297/1-998 VEDPSTVCFW TESCFTLVPY TLVHPHRPSR PRPVLFVPRV VGKILIEKLC bmy_02281T0/1-986 ---------- --SYFTLVPY TLVHSHRPSR PRPVLFVPRV VGKILMEKLC BACU011592/1-998 VEDPSTVCFW AESYFTLVPY TLVHSHRPSR PRPVLFVPRV VGKILMEKLC 851 900 ENSTTRP00000000484/1-778 LFQGYKKCPA AYLSQEEYDA SSQRGDIIQK REAPGGRYCV TCRAVESLMR ENSP00000458715/1-1004 LLQGFKKCLA EYLSQEEYEA WSQRGDIIQE GEVSGGRCWV TRHAVESLME ENSBTAP00000020297/1-998 LFQGFKKCPA EYLSQEEYDT SSQRGDIIQE REASGGLYCV TRRAVESLMG bmy_02281T0/1-986 LLQGYKKCPA AYLSQEEYDA SSQRGDIIQE REASGGRYCV TCRAVESLMG BACU011592/1-998 LLQGYKKCPA AYLSQKEYDA SSQRGDIIQE REASGGRYCV TCRAVESLMG 901 950 ENSTTRP00000000484/1-778 KNTHALLDVQ LDSVRVLHKM EIFPIIIHIS INEKVAKKFK KALQQLGTAE ENSP00000458715/1-1004 KNTHALLDVQ LDSVCTLHRM DIFPIVIHVS VNEKMAKKLK KGLQRLGTSE ENSBTAP00000020297/1-998 KNTHALLDIQ LDSVCVLHRM EIFPIIIHVS INEKVAKKFK KALQRLGTTE bmy_02281T0/1-986 KNTHALLDVQ LDSVRVLHKM EIFPIIIHIS INEKVAKKFK KALQRLGTTE BACU011592/1-998 KNTHALLDVQ LDSVRVLHKM EIFPIIIHIS INEKVAKKFK KALQQLGTTE 951 1000 ENSTTRP00000000484/1-778 NQLLEAARQE EGELDEVPCL YSSLAPDSWS DLHALLGCVR LAIADEQKKV ENSP00000458715/1-1004 EQLLEAARQE EGDLDRAPCL YSSLAPDGWS DLDGLLSCVR QAIADEQKKV ENSBTAP00000020297/1-998 DQLLEAARQE EAELDKVPCL YSSLAPESWS DLDALLGCVR LAITDEQRKV bmy_02281T0/1-986 DQLLEAARQE EGELDKVPCL YSSLAPDSWS DLHALLGCVR LAIADEQKKV BACU011592/1-998 DQLLEAARQE EGELDKVPCL YSSLAPDSWS DLHALLGCVR LAIADEQKKV 1001 1050 ENSTTRP00000000484/1-778 VWTERPC- ENSP00000458715/1-1004 VWTEQSPR ENSBTAP00000020297/1-998 VWTE---- bmy_02281T0/1-986 VWTE---- BACU011592/1-998 VWTE----