KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:11:01 2014 Check: 00 .. Name: ENSP00000300181/1-395 Len: 415 Check: 5779 Weight: 1.00 Name: ENSBTAP00000020310/1-329 Len: 415 Check: 1315 Weight: 1.00 Name: bmy_16107T0/1-395 Len: 415 Check: 6919 Weight: 1.00 Name: BACU012079/1-395 Len: 415 Check: 6165 Weight: 1.00 // 1 50 ENSP00000300181/1-395 MSGGKKKSSF QITSVTTDYE GPGSPGASDP PTP------- -------QPP ENSBTAP00000020310/1-329 MSGGKKKSSF QITSVTLDYE GPGSPGGSDA PALPAPPGPP APTGPSAPAP bmy_16107T0/1-395 MSGGKKKSSF QITSVTTDYE GPGSPGGPDT PAL------- -------PAP BACU012079/1-395 MSGGKKKSSF QITSVTTDYE GPGSPGGPDT PAL------- -------PAP 51 100 ENSP00000300181/1-395 TGPPPRLPNG EPSPDPGGKG TPRNGSPPPG APSSRFRVVK LPHGLGEPYR ENSBTAP00000020310/1-329 TGPPPRLPNG EPNPEPGGKS TPRNGSPPPG APASRFRVVK LPQGLGEPYR bmy_16107T0/1-395 TGPPPRLPNE EPNPEPGGKG TPRNGSPPPG APASRFRVVK LPQGLGEPYR BACU012079/1-395 TGPPPRLPNE EPNPEPGGKG TPRNGSPPPG APASRFRVVK LPQGLGEPYR 101 150 ENSP00000300181/1-395 RGRWTCVDVY ERDLEPHSFG GLLEGIRGAS GGAGGRSLDS RLELASLGLG ENSBTAP00000020310/1-329 RGRWTCVDVY ERDLEPPSFS RLLEGIRGAS GGNGGRSLDS RLELASLGLG bmy_16107T0/1-395 RGRWTCVDVY ERDLEPPSFG RLLEGIRGAS GGNGGRSLDS RLELASLGLA BACU012079/1-395 RGRWTCVDVY ERDLEPPSFG RLLEGIRGAS GGNGGRSLDS RLELASLGLA 151 200 ENSP00000300181/1-395 APTPPSGLSQ GPTSWLRPPP TSPGPQARSF TGGLGQLVVP SKAKAEKPPL ENSBTAP00000020310/1-329 APTPQPGLSQ VPTSWLRPPP TSPGPQARSF TGGLGQLAVP GKAKVETPPL bmy_16107T0/1-395 APTPQPGLSQ GPTSWLRPPP TSPGPQARSF TGGLGQLAVP GKAKLETTPL BACU012079/1-395 APAPQAGLSR GPTSWLRPPP TSPGPQARSF TGGLGQLAVP GKAKLETTPL 201 250 ENSP00000300181/1-395 SASSPQQRPP EPETGESAGT SRAATPLPSL RVEAEAGGS- -----GARTP ENSBTAP00000020310/1-329 SASPPQQRPP EPGTADSAGP SRAATPLPTL RVEAEAGGSA AAAAAAAGTP bmy_16107T0/1-395 SASPPQQRPP EAGTGDSAGT SRAATPLPSL RVEVEAGGS- -----TAGTP BACU012079/1-395 SASPPQQRPP EAGTGGSAGT SRAATPLPSL RVEVEAGGS- -----TAGTP 251 300 ENSP00000300181/1-395 PLSRRKAVDM RLRMELGAPE EMGQVPPLDS RPSSPALYFT HDASLVHKSP ENSBTAP00000020310/1-329 PLSRVKDGAL RLRMELVAPE EMGQVPPVDS RPSSPALYFF PDASLVHKSP bmy_16107T0/1-395 PLSRAKDGAL RLRMELVAPE EMGQVPPLDS RPSSPALYFF PDASLVHKSP BACU012079/1-395 PPSRAKDGAL RLRMELVAPE EMGQVPPLDS RPSSPALYFF PDASLVHKSP 301 350 ENSP00000300181/1-395 DPFGAVAAQK FSLAHSMLAI SGHLDSDDDS GSGSLVGIDN KIEQAMDLVK ENSBTAP00000020310/1-329 DPLGTVAAQS LNFARSMLAI SGHLDSDDD- ---------- ---------- bmy_16107T0/1-395 DPFGTAAAQS LSFARSMLAI SGHLDSDDDS GSGSLVGIDN KIEQAMDLVK BACU012079/1-395 DPFGTAAAQS LSFARSMLAI SGHLDSDDDS GSGSLVGIDN KIEQAMDLVK 351 400 ENSP00000300181/1-395 SHLMFAVREE VEVLKEQIRE LAERNAALEQ ENGLLRALAS PEQLAQLPSS ENSBTAP00000020310/1-329 ---------- ---------- ---------- ---------- ---------- bmy_16107T0/1-395 SHLMFAVREE VEVLKEQIRD LAERNAALEQ ENGLLRALAS PEQLAQLPSS BACU012079/1-395 SHLMFAVREE VEVLKEQIRD LAERNAALEQ ENGLLRALAS PEQLAQLPSS 401 450 ENSP00000300181/1-395 GVPRLGPPAP NGPSV ENSBTAP00000020310/1-329 ---------- ----- bmy_16107T0/1-395 GVPRLGPPAP NGPSV BACU012079/1-395 GVPRLGPPAP NGPSV