KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:05 2014 Check: 00 .. Name: ENSTTRP00000000491/1-597 Len: 615 Check: 7373 Weight: 1.00 Name: ENSP00000355384/1-606 Len: 615 Check: 3506 Weight: 1.00 Name: ENSBTAP00000020324/1-602 Len: 615 Check: 5793 Weight: 1.00 Name: bmy_02280T0/1-575 Len: 615 Check: 7013 Weight: 1.00 Name: BACU011594/1-608 Len: 615 Check: 1190 Weight: 1.00 // 1 50 ENSTTRP00000000491/1-597 ---MSSTMKP PK----GFAP MSCCWSTATM QKRLPFLAWL PDYTWHALKM ENSP00000355384/1-606 MPSSVTALGQ ARSSGPGMAP SACCCSPAAL QRRLPILAWL PSYSLQWLKM ENSBTAP00000020324/1-602 MSPPMSPMKP PK----GFAP MSCCWSTETM QKWLPFLGWL PDYTWYALKM bmy_02280T0/1-575 ---MSSTMKP PK----GFAP MSCCWSTATM QKRLPFLAWL PDYTWHALKM BACU011594/1-608 ---MSSTMKP PK----GFAP MSCCWSTATM QKRLPFLAWL PDYTWHALKM 51 100 ENSTTRP00000000491/1-597 DFIAGISVGL TVIPQALAYA EVAGLPPQYG LYSAFMGCFV YFFLGTSRDV ENSP00000355384/1-606 DFVAGLSVGL TAIPQALAYA EVAGLPPQYG LYSAFMGCFV YFFLGTSRDV ENSBTAP00000020324/1-602 DFIAGISVGL TVIPQALAYA EVAGLPPQYG LYSAFMGCFV YFFLGTSRDV bmy_02280T0/1-575 DFIAGISVGL TVIPQALAYA EVAGLPPQYG LYSAFMGCFV YFFLGTSRDV BACU011594/1-608 DFIAGISVGL TVIPQALAYA EVAGLPPQYG LYSAFMGCFV YFFLGTSRDV 101 150 ENSTTRP00000000491/1-597 TLGPTAIMSL LVSFYTFREP AYAVLLAFLS GCIQLGMGFL RLGFLLDFIS ENSP00000355384/1-606 TLGPTAIMSL LVSFYTFHEP AYAVLLAFLS GCIQLAMGVL RLGFLLDFIS ENSBTAP00000020324/1-602 TLGPTAIMSL LVSFYTFHEP AYAVLLAFLT GCIQLGMGFL RLGLLLDFIS bmy_02280T0/1-575 TLGPTAIMSL LVSFYTFHEP AYAVLLAFLS GCIQLGMGFL RLGFLLDFIS BACU011594/1-608 TLGPTAIMSL LVSFYTFHEP AYAVLLAFLS GCIQLGMGFL RLGFLLDFIS 151 200 ENSTTRP00000000491/1-597 CPVIKGFTSA AAIIIGFGQI KNLLGLQHIS RQFFLQVYYT FRNIGETRVG ENSP00000355384/1-606 YPVIKGFTSA AAVTIGFGQI KNLLGLQNIP RPFFLQVYHT FLRIAETRVG ENSBTAP00000020324/1-602 CPVIKGFTSA AAIIIGFGQI KNLLGLQHIP RQFFLQVYYT FHNIGETRVG bmy_02280T0/1-575 CPVIKGFTSA AAIIIGFGQI KNLLGLQHIS RQFFLQVYYT FHNIGETRVG BACU011594/1-608 CPVIKGFTSA AAIIIGFGQI KNLLGLQHIS RQFFLQVYYT FHNIGETRVG 201 250 ENSTTRP00000000491/1-597 DAVLGLVCMV LLLVLKLMRD HVPPVHPEMP TGVRLSHGLV WTATTXXXXX ENSP00000355384/1-606 DAVLGLVCML LLLVLKLMRD HVPPVHPEMP PGVRLSRGLV WAATTARNAL ENSBTAP00000020324/1-602 DAVLGLVCMV LLLVLKLMRD HVPPVHPEMP TGVRLSHGLV WTATTARNAL bmy_02280T0/1-575 DAVLGLVCMV LLLVLKLMRD HVPPVHPEMP TGVRLSHGLV WTATTARNAL BACU011594/1-608 DAVLGLVCMV LLLVLKLMRD HVPPVHPEMP TGVRLSHGLV WTATTARNAL 251 300 ENSTTRP00000000491/1-597 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355384/1-606 VVSFAALVAY SFEVTGYQPF ILTGETAEGL PPVRIPPFSV TTANGTISFT ENSBTAP00000020324/1-602 VVSFAALVAY SFQVTGYQPF VLTGKTPEGL PDAHIPPFSV TTANGTISFT bmy_02280T0/1-575 VVSFAALVAY SFQVTGYQPF VLTGKTPEGL PDAHIPPFSV TTANGTISFT BACU011594/1-608 VVSFAALVAY SFQVTGYQPF VLTGKTPEGL PDAHIPPFSV TTANGTISFT 301 350 ENSTTRP00000000491/1-597 XXXXXXXAGL AVVPMMGLLE SIAVAKSFXX XXXXXXXXXX XXXXXXXXXX ENSP00000355384/1-606 EMVQDMGAGL AVVPLMGLLE SIAVAKAFAS QNNYRIDANQ ELLAIGLTNM ENSBTAP00000020324/1-602 EMVQGMGAGL VVVPLMGLLE SIAVAKSFAS QNNYRINSNQ ELLALGFTNI bmy_02280T0/1-575 EMVQGMGAGL AVVPLMGLLE SIAVAKSFAS QHNYRIDANQ ELLAIGLTNI BACU011594/1-608 EMVQGMGAGL AVVPLMGLLE SIAVAKSFAS QNNYRIDANQ ELLAIGLTNI 351 400 ENSTTRP00000000491/1-597 XXXXXXXXXX XXXXXXTAVN AQSGVCTPAG GLMTGALVLL SLDYLTSLFY ENSP00000355384/1-606 LGSLVSSYPV TGSFGRTAVN AQSGVCTPAG GLVTGVLVLL SLDYLTSLFY ENSBTAP00000020324/1-602 LGSLFSSYPV TGSFGRTAVN AQSGVCTPAG GLMTGALVLL SLDYLTSLFY bmy_02280T0/1-575 LGSLFSSYPV TGSFGRTAVN AQSGVCTPAG GLMTGALVLL SLDYLTSLFY BACU011594/1-608 LGSLFSSYPV TGSFGRTAVN AQSGVCSPAG GLMTGALVLL SLDYLTSLFY 401 450 ENSTTRP00000000491/1-597 YIPKSALAAV IIMAVVPLFD TKIVGTLWRV KRLDLLPLCV TFLLCFWEVQ ENSP00000355384/1-606 YIPKSALAAV IIMAVAPLFD TKIFRTLWRV KRLDLLPLCV TFLLCFWEVQ ENSBTAP00000020324/1-602 YIPKSALAAV IIMAVVPLFD TKIVKTLWRV KRLDLLPLCV TFLLCFWEVQ bmy_02280T0/1-575 YIPKSALAAV IIMAVVPLFD TKIVGTLWRV KRLDLLPLCV TFLLCFWEVQ BACU011594/1-608 YIPKSALAAV IIMAVVPLFD TKIVGTLWRV KRLDLLPLCA TFLLCFWEVQ 451 500 ENSTTRP00000000491/1-597 YGILTGTLVS MLVLLHSVAR PKIQVSEGPM LVLQPASGLH FPAIETLREA ENSP00000355384/1-606 YGILAGALVS LLMLLHSAAR PETKVSEGPV LVLQPASGLS FPAMEALREE ENSBTAP00000020324/1-602 YGILAGTLVS VLILLHSVAR PKIQVSEGPM LVLQPASGLH FPAIETLREA bmy_02280T0/1-575 YGILAGTLVS MLILLHSVAR PKIQVSEGPM LVLQPVSGLH FPAIETLREA BACU011594/1-608 YGILAGTLVS MLILLHSVAR PKIQVSEGPM LVLQLASGLH FPAIETLREA 501 550 ENSTTRP00000000491/1-597 LLSRALETSP PRSAALDCTH ICSIDYTVVL GLGELLEDFH KRGATLALIG ENSP00000355384/1-606 ILSRALEVSP PRCLVLECTH VCSIDYTVVL GLGELLQDFQ KQGVALAFVG ENSBTAP00000020324/1-602 LLSRALETSP PRSVALDCTH ICSIDYTVVL GLGELLEDFH KRGATLALIG bmy_02280T0/1-575 LLSRALETSP PRSAALDCTH ICNIDYTV-- ---------- ---------- BACU011594/1-608 LLRRALETSP PRSAALDCTH ICNIDYTVVL GLGELLEDFH KRGATLALIG 551 600 ENSTTRP00000000491/1-597 L-VPVLRVLL SADLKGVLYF CTLEE----- ----AEKYLK QEPGTPPYNG ENSP00000355384/1-606 LQVPVLRVLL SADLKGFQYF STLEE----- ----AEKHLR QEPGTQPYNI ENSBTAP00000020324/1-602 LQVPVLRVLL SADLKGVLYF CTLEE----- ----AEKYLK QEPGTQPYNG bmy_02280T0/1-575 --VPVLRVLL SADLKGVLYF CTLEE----- ----AEKYLK QEPGTQPYNG BACU011594/1-608 LQVPVLRVLL SADLKGVLYF CTLEEAVFGN LVFSAEKYLK QEPGTQPYNG 601 650 ENSTTRP00000000491/1-597 SEDSVPEHKI ALLK- ENSP00000355384/1-606 REDSILDQKV ALLKA ENSBTAP00000020324/1-602 SEDSVPEHKI ALLKA bmy_02280T0/1-575 SEDSVPEHKI ALLKA BACU011594/1-608 SEDSVPEHKI ALLKA