KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:06 2014 Check: 00 .. Name: ENSP00000362656/1-767 Len: 804 Check: 1241 Weight: 1.00 Name: ENSBTAP00000020327/1-766 Len: 804 Check: 8415 Weight: 1.00 Name: ENSTTRP00000016486/1-768 Len: 804 Check: 2192 Weight: 1.00 Name: bmy_04634T0/1-476 Len: 804 Check: 2429 Weight: 1.00 Name: BACU016289/1-768 Len: 804 Check: 5811 Weight: 1.00 // 1 50 ENSP00000362656/1-767 MFAKLKKKIA EETAVAQRPG GATRIPRSVS KESVASMGAD SGDDFASDGS ENSBTAP00000020327/1-766 MFAKLKKKIA EETAVAQRPG GATRIPRSVS KESVASMGAD SGDDFASDGS ENSTTRP00000016486/1-768 MFAKLKKKIA EETAVAQRPG GATRIPRSVS KESVASMGAD SGDDFASDGS bmy_04634T0/1-476 MFAKLKKKIA EETAVAQRPG GATRIPRSVS KESVASMGAD SGDDFASDGS BACU016289/1-768 MFAKLKKKIA EETAVAQRPG GATRIPRSVS KESVASMGAD SGDDFASDGS 51 100 ENSP00000362656/1-767 SSREDLSSQL LRRNEQIRKL EARLSDYAEQ VRNLQKIKEK LEIALEKHQD ENSBTAP00000020327/1-766 SSREDLSSQL LRRNEQIRKL EARLSDYAEQ VRTLQKIKEK LEIALEKHQD ENSTTRP00000016486/1-768 SSREDLSSQL LRRNEQIRKL EARLSDYAEQ VRNLQKIKEK LEIALEKHQD bmy_04634T0/1-476 SSREDLSSQL LRRNEQIRKL EARLSDYAEQ VRNLQKIKEK LEIALEKHQD BACU016289/1-768 SSREDLSSQL LRRNEQIRKL EARLSDYAEQ VRNLQKIKEK LEIALEKHQD 101 150 ENSP00000362656/1-767 -------SSM RKFQEQNETF QANRAKMAEG LALALARKDQ EWSEKMDQLE ENSBTAP00000020327/1-766 -------SSM RKFQEQNETF QANRARMAEG LALALARKDQ EWSEKVDQLE ENSTTRP00000016486/1-768 -------SSM RKFQEQNETF QANRAKMAEG LALALARKDQ XXXXXXXXXX bmy_04634T0/1-476 CTASLLTASM RKFQEQNETF QANRAKMAEG LALALARKDQ EWSEKMDQLE BACU016289/1-768 -------SSM RKFQEQNETF QANRAKMAEG LALALARKDQ EWSEKMDQLE 151 200 ENSP00000362656/1-767 KEKNILTAQL QEMKNQSMNL FQRRDEMDEL EGFQQQELSK IKHMLLKKEE ENSBTAP00000020327/1-766 KDKRFLTAQL QEMKNQSLNL FQRRDEMDEL EGFQQQELSK VKHMLLKKEE ENSTTRP00000016486/1-768 XDKRFLTAQL QEMKNQSLNL FQRRDEMDEL EGFQQQELSK VKHMLLKKEE bmy_04634T0/1-476 KDKRFLTAQL QEMKNQSLNL FQRRDEMDEL EGFQQQELSK VKHLLLKKEE BACU016289/1-768 KDKRFLTAQL QEMKNQSLNL FQRRDEMDEL EGFQQQELSK VKHMLLKKEE 201 250 ENSP00000362656/1-767 SLGKMEQELE ARTRELSRTQ EELMNSNQMS SDLSQKLEEL QRHYSTLEEQ ENSBTAP00000020327/1-766 SLGKMEQELE ARTRELSRTQ EELVTSSQIS LDLSQKLEEL QRHYSALEEQ ENSTTRP00000016486/1-768 SLGKMEQELE ARTRELSRTQ EELMISNQLS ADLSQKIEEL QRYYSTLEEQ bmy_04634T0/1-476 SLGKMEQELE ARTRELSRTQ EELMISNQMS ADLSQKIEEL QRNYSTLEEQ BACU016289/1-768 SLGKMEQELE ARTRELSRTQ EELMISNQMS ADLSQKIEEL QRNYSTLEEQ 251 300 ENSP00000362656/1-767 R--------- ---------- ---------- DHVIASKTGA ESKITALEQK ENSBTAP00000020327/1-766 R--------- ---------- ---------- DHVTASKTGA ENKITVLEQK ENSTTRP00000016486/1-768 R--------- ---------- ---------- DHVTASKTGA ENKITALEQK bmy_04634T0/1-476 RFLLGLWGTE SEGVFSTDNL HKANVCSPDI DHVTASKTGA ENKITALEQK BACU016289/1-768 R--------- ---------- ---------- DHVTASKTGA ENKITALEQK 301 350 ENSP00000362656/1-767 EQELQALIQQ LSIDLQKVTA ETQEKEDVIT HLQEKVASLE KRLEQNLSGE ENSBTAP00000020327/1-766 EQELQAFIQQ LSIDLQKVTA ETQEKEKLIT HLQEKVASLE KRLEQNLSGE ENSTTRP00000016486/1-768 EQELQAFVQQ LSIDLQKATA ETQEKEKLIT HLQEKVASLE KRLEQNLSGE bmy_04634T0/1-476 EQELQAFIQQ LSIDLQKATA ETQEKEKLIT HLQEKVASLE KRLEQNLSGE BACU016289/1-768 EEELQAFIQQ LSIDLQKATA ETQEKEKLIT HLQEKVASLE KRLEQNLSGE 351 400 ENSP00000362656/1-767 EHLQELLKEK TLAEQNLEDT RQQLLAARSS QAKAINTLET RVRELEQTLQ ENSBTAP00000020327/1-766 EHVQELLKEK TLAEQNLEDT RQQLLAARSS QAKAINNLET RVKELEQSLQ ENSTTRP00000016486/1-768 EHVQELLKEK TLAEQNLEDT RQQLLAARSS QANATDSLET RVKELEQSLQ bmy_04634T0/1-476 EHGQELLKE- ---------- ---------- ---------- -VKELEQSLQ BACU016289/1-768 EHVQELLKEK TLAEQNLEDT RQQLLAARSS QANAIDSLET RVKELEQSLQ 401 450 ENSP00000362656/1-767 ASEEQLQQSK GIVAAQETQI QELAAANQES SHVQQQALAL EQQFLERTQA ENSBTAP00000020327/1-766 ASEEELKRSG DVVAAREAQI RELAAANTES SRAQQQALAL EQQQAERIHA ENSTTRP00000016486/1-768 ASEEKLKQSS DVVAAQEAQI QELASANKES SCAQQQVLAL EQQCTEQIHT bmy_04634T0/1-476 ASEEKLKQSS DVVTAQEARI QELASANKES SCAQQQVLAL EQQCTEQIHT BACU016289/1-768 ASEEKLKQSS DVVTAQEAQI QELASANKES SCAQQQVLAL EQQCTEQIHT 451 500 ENSP00000362656/1-767 LEAQIVALER TRAADQTTAE QGMRQLEQEN AALKECRNEY ERSLQNHQFE ENSBTAP00000020327/1-766 LETQLAGLGR ARVADLTATE QELRKLEQEN AALKESKNEC ECSLQHHQLE ENSTTRP00000016486/1-768 LEAQLSALER ARADDHAAAE RKVRELEQEN AGLKESKNEC EHSLQHHQLE bmy_04634T0/1-476 LEAQLSALER ARAADHAAAE RKVRELEQEN AGLKESKNEC EHSLQHHQLE BACU016289/1-768 LEAQLSALER ARAADHAAAE RKVRELEQEN AGLKESKNEC EHSLQHHQLE 501 550 ENSP00000362656/1-767 LKKLKEEWSQ REIVSVAMAQ ALEEVRKQRE EFQQQAANLT AIIDEKEQNL ENSBTAP00000020327/1-766 LKKLKEEWSQ REIVSVAMAQ ALEEVRKQRE ELQQQAADLT AMMGEKEQSL ENSTTRP00000016486/1-768 LKKLKEEWSQ REIVSVAMAQ ALEEVRKQRE EFQQQAANLI AIGGEKEQSL bmy_04634T0/1-476 LKKLK----- ---------- ---------- ---------- ---------- BACU016289/1-768 LKKLKEEWSQ REIVSVAMAQ ALEEVRKQRE EFQQQAANLI AIEGEKEQSL 551 600 ENSP00000362656/1-767 REKTEVLLQK EQEILQLERG HNSALLQIHQ LQAELEALRT LKAEEAAVVA ENSBTAP00000020327/1-766 QEKMEVILQK EQEILQLKKG HDSALLQTRQ LQSELEALQG LRAEEA--TA ENSTTRP00000016486/1-768 QEKTEVILQK EQEILQLKKG HDSALLQMRQ LQSELEALRS LRAEQSEAAD bmy_04634T0/1-476 ---------- ---------- ---------- ---------- ---------- BACU016289/1-768 QEKTEVILQK EQEILQLKKG HDSALLQMRQ LQSELEALRG LRAQEPEAAA 601 650 ENSP00000362656/1-767 EQEDLLRLRG PLQAEALSVN ESHVTSRAMQ DPVFQLPTAG RTPNGEVG-A ENSBTAP00000020327/1-766 TREDLLRLTG QERPLVLSAS KPHVTSRARQ DPEYQLPAVE GIPNGEMGAA ENSTTRP00000016486/1-768 EREDLLRLRS QEQGVVLSIS EPHVTSRAGQ DPAYQLPAAE GIPNGEMGTA bmy_04634T0/1-476 ---------- ---------- ---------- ---------- ---------- BACU016289/1-768 AREDLLRLRG QEQGAVLSVS EPHVTSRAGQ DPTYQLPAAE GIPNGEMGTA 651 700 ENSP00000362656/1-767 MDLTQLQKEK QDLEQQLLEK NKTIKQMQQR MLELRKTLQK ELKIRPDNEL ENSBTAP00000020327/1-766 TDLGQLQKEK QDLEQQLLEK NKTIKQMQQR MLELKKTLQK ELKIRPDNEL ENSTTRP00000016486/1-768 MDLGQLQKEK QDLEQQLLEK NKTIKQMQQR MLELKKTLQK ELKIRPDNEL bmy_04634T0/1-476 ---------- ---------- ---------- ---------- ---------- BACU016289/1-768 MDLGQLQKEK QDLEQQLLEK NKTIKQMQQR MLELKKTLQK ELKIRPDNEL 701 750 ENSP00000362656/1-767 FEVREKPGPE MANMAPSVTN NTDLTDAREI NFEYLKHVVL KFMSCRESEA ENSBTAP00000020327/1-766 FEVREKPGPE MSNLAPSVTN NADLTDAREI NFEYLKHVVL KFMSCRESEA ENSTTRP00000016486/1-768 FEVREKPGPE MTNMVPSVTN NADLTDAREI NFEYLKHVVL KFMSCRESEA bmy_04634T0/1-476 ---------- ---------- ---------- ---------- ---------- BACU016289/1-768 FEVREKPGPE MPNMAPSVTN NADLTDAREI NFEYLKHVVL KFMSCRESEA 751 800 ENSP00000362656/1-767 FHLIKAVSVL LNFSQEEENM LKETLEYKMS WFGSKPAPKG SIRPSISNPR ENSBTAP00000020327/1-766 FHLIKAVSVL LNFSQEEENM LKETLEYKMS WFGSKPAPKG SIRPSISNPR ENSTTRP00000016486/1-768 FHLIKAVSVL LNFSQEEENM LRETLEYKMS WFGSKPAPKG SIRPSISNPR bmy_04634T0/1-476 --------VF I--------- ---------- ---------- ---------- BACU016289/1-768 FHLIKAVSVL LNFSQEEENM LKETLEYKMS WFGSKPAPKG SIRPSISNPR 801 850 ENSP00000362656/1-767 IPWS ENSBTAP00000020327/1-766 TPWS ENSTTRP00000016486/1-768 IPWS bmy_04634T0/1-476 ---- BACU016289/1-768 IPWS