KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:07 2014 Check: 00 .. Name: ENSP00000361281/1-473 Len: 511 Check: 1047 Weight: 1.00 Name: ENSBTAP00000020330/1-460 Len: 511 Check: 4069 Weight: 1.00 Name: ENSTTRP00000003180/1-467 Len: 511 Check: 4578 Weight: 1.00 Name: bmy_19780T0/1-481 Len: 511 Check: 9656 Weight: 1.00 Name: BACU018750/1-469 Len: 511 Check: 9027 Weight: 1.00 // 1 50 ENSP00000361281/1-473 MTVSYTLKVA EARFGGFSGL LLRWRGSIYK LLYKEFLLFG ALYAVLSITY ENSBTAP00000020330/1-460 MTVSYTLKVA EARFGGFSGL LLRWRGSIYK LLYKEFLLFI ALYALLSVTY ENSTTRP00000003180/1-467 MTVSYTLKVA EARFGGFSGL LLRWRGSIYK LLYKEFLVFI ALYALLSITY bmy_19780T0/1-481 MTVSYTLKVA EARFGGFSGL LLRWRGSIYK LLYKEFLLFI ALYALLSITY BACU018750/1-469 MTVSYTLKVA EARFGGFSGL LLRWRGSIYK LLYKEFLLFI ALYALLSITY 51 100 ENSP00000361281/1-473 RLL-LTQEQR YVYAQVARYC NRSADLIPLS FVLGFYVTLV VNRWWSQYTS ENSBTAP00000020330/1-460 RLL-LTQEQK RVYAQVARYC NRSADLIPLS FVLGFYVTMV VNRWWAQYTS ENSTTRP00000003180/1-467 RLL-LTQEQR LVYAQVARYC NRSAELIPLS FVLGFYVTLV VNRWWAQYTS bmy_19780T0/1-481 RCEGEGREQR HVYAQVARYC NRSAELIPLS FVLGFYVTLV VNRWWAQYTS BACU018750/1-469 RLL-LTQEQR LVYAQVARYC NRSAELIPLS FVLGFYVTLV VNRWWAQYTS 101 150 ENSP00000361281/1-473 IPLPDQLMCV ISASVHGVDQ RGRLLRRTLI RYANLASVLV LRSVSTRVLK ENSBTAP00000020330/1-460 IPLPDQLMCV ISATVHGVDQ RGRLLRRTLI RYANLASVLV LRSVSTRVLK ENSTTRP00000003180/1-467 IPLPDQLMCV ISASVHGVDQ RGRLLRRTLI RYANLASVLV LRSVSTRVLK bmy_19780T0/1-481 IPLPDQLMCV ISASVHGVDQ RGRLLRRTLI RYANLASVLV LRSVSTRVLK BACU018750/1-469 IPLPDQLMCV ISASVHGVDQ RGRLLRRTLI RYANLASVLV LRSVSTRVLK 151 200 ENSP00000361281/1-473 RFPTMEHVVD AGFMSQEERK KFESLKSDFN KYWVPCVWFT NLAAQARRDG ENSBTAP00000020330/1-460 RFPTMEHVVD AG-------E RSGSPGRDFN KYWIPCVWFT NLAAQARRDG ENSTTRP00000003180/1-467 RFPTMEHVVD AGFMSQEERK KFESLKSDFN KYWIPCVWFT NLAAQARRDG bmy_19780T0/1-481 RFPTMEHVVD AGFMSQEERK KFESLKSDFN KYWVPCVWFT NLAAQARRDG BACU018750/1-469 RFPTMEHVVD AGFMSQEERK KFESLKSDFN KYWVPCVWFT NLAAQARRDG 201 250 ENSP00000361281/1-473 RIRDDIALCL LLEELNKYRA KCSMLFHYDW ISIPLVYTQV VTIAVYSFFA ENSBTAP00000020330/1-460 RIRDDIALCL LLEELNKYRA KCSMLFHYDW ISIPLVYTQV VTIAVYSFFA ENSTTRP00000003180/1-467 RIRDDIALCL LLEELNKYRA KCSMLFHYDW ISIPLVYTQV VTIAVYSFFA bmy_19780T0/1-481 RIRDDIALCL LLE------- ---------- ---------V VTIAVYSFFA BACU018750/1-469 RIRDDIALCL LLEELNKYRA KCSMLFHYDW ISIPLVYTQV VTIAVYSFFA 251 300 ENSP00000361281/1-473 LSLVGRQFVE PEAGAAKPQK LLKPGQEPAP ALGDPDMYVP LTTLLQFFFY ENSBTAP00000020330/1-460 LSLVGRQFVE PVAGAATPRE PLEPG----Q AAGDLDMYVP LTTLLQFFFY ENSTTRP00000003180/1-467 LSLVGRQFVE SEAGAAKPQK LLEPG----P ALGDLDMYVP LTTLLQFFFY bmy_19780T0/1-481 LSLVGRQFVE SEAGAAKPRE PLEPG----P ALGDLDMYVP LTTLLQFFFY BACU018750/1-469 LSLVGRQFVE SEAGAAKPRE PLEPG----P ALGDLDMYVP LTTLLQFFFY 301 350 ENSP00000361281/1-473 AGWLKVAEQI INPFGEDDDD FETNQLIDRN L--------- ---------- ENSBTAP00000020330/1-460 AGWLKVAEQI INPFGEDDDD FETNQLIDRN L--------- ---------- ENSTTRP00000003180/1-467 AGWLKADQ-- IHPFGEDDDD FETNKLIDRN L--------- ---------- bmy_19780T0/1-481 AGWLKVAEQI INPFGEDDDD FETNKLIDRN LQVIKGLVAA HWQSGSPSLP BACU018750/1-469 AGWLKVAEQI INPFGEDDDD FETNKLIDRN L--------- ---------- 351 400 ENSP00000361281/1-473 ---------- --------QV SLLSVDEMYQ NLPPAEKDQY WDEDQPQPPY ENSBTAP00000020330/1-460 ---------- --------QV SLLSVDDMYQ NLPPAEKDAY WDEDSAQPPY ENSTTRP00000003180/1-467 ---------- --------QV SLLSVDDMYQ NLPPAEKDPY WDEDSAQPPY bmy_19780T0/1-481 ALSPGMQERG ILVTRCPPQV SLLSVDDMYQ NLPPAEKDPY WDEDSAQPPY BACU018750/1-469 ---------- --------QV SLLSVDDMYQ NLPPAEKDPY WDEDSAQPPY 401 450 ENSP00000361281/1-473 TVATAAESLR PSFLGSTFNL RMSDDPEQSL QVEASPGSGR PAPAAQTPLL ENSBTAP00000020330/1-460 TVATVAESLR PSFLGSTFNL RMSDDPEQSL QVEASPGPAR PVT-AQTPLL ENSTTRP00000003180/1-467 TVATVAESLR PSFLGSTFNL RISDDPEQSL QVETSPGPAR PVTAAQTPLL bmy_19780T0/1-481 TVATVAESLR PSFLGSTFNL RVSDDPDQSL QVEASPGPAR PVTAAQTPLL BACU018750/1-469 TVATVAESLR PSFLGSTFNL RVSDDPEQSL QVETSPGPAR PVTAAQTPLL 451 500 ENSP00000361281/1-473 GRFLGVGAPS PAISLRNFGR VRGTPRPPHL LRFRAEEGGD PEAAARIEEE ENSBTAP00000020330/1-460 GRFLGVGAPS PAISLRNFGR IR-APRTPHL VRFRAEEGGD IEAVDRIEEE ENSTTRP00000003180/1-467 SRFLGVGAPS PAISLRNFGR IRGAPRTPHL LRFRAEEGGD LEAADRIEEE bmy_19780T0/1-481 SRFLGVGAPS PAISLRNFGR VRGAPRTPHL LRFRAEEGGD LEAADRIEEE BACU018750/1-469 SRFLGVGAPS PAISLRNFGR VRGAPRTPHL LRFRAEEGGD LEATDRIEEE 501 550 ENSP00000361281/1-473 SAESGDEALE P ENSBTAP00000020330/1-460 ASGSGDETQE P ENSTTRP00000003180/1-467 ASGSGDEAQE P bmy_19780T0/1-481 ALGSGDEAQE P BACU018750/1-469 ALGSGEEAQE P