KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:07 2014 Check: 00 .. Name: ENSTTRP00000005300/1-531 Len: 599 Check: 8026 Weight: 1.00 Name: ENSP00000371085/1-529 Len: 599 Check: 6441 Weight: 1.00 Name: BACU019043/1-539 Len: 599 Check: 3799 Weight: 1.00 Name: bmy_01128T0/1-576 Len: 599 Check: 999 Weight: 1.00 Name: ENSBTAP00000020331/1-529 Len: 599 Check: 7186 Weight: 1.00 // 1 50 ENSTTRP00000005300/1-531 ---------- ---------- ---------- ---------- ----MAPEMD ENSP00000371085/1-529 ---------- ---------- ---------- ---------- ----MAPEMD BACU019043/1-539 ---------- ---------- ---------- ---------- ----MAPEMD bmy_01128T0/1-576 ISGSHSATSF TACWAVGIGG YRPPVLPALL APPAFYSVPG CAHSMAPEMD ENSBTAP00000020331/1-529 ---------- ---------- ---------- ---------- ----MAPEMD 51 100 ENSTTRP00000005300/1-531 QFYRSTMAIY KSIMEQFNPA LENLVYLGNN YLRAFHALSE AAEVYFNAIQ ENSP00000371085/1-529 QFYRSTMAIY KSIMEQFNPA LENLVYLGNN YLRAFHALSE AAEVYFSAIQ BACU019043/1-539 QLYRSTMAIY KSIMEQFNPA LENLVYLGNN YLRAFHALSE AAEVYFNAIQ bmy_01128T0/1-576 QLYRSTMAIY KSIMEQFNPA LENLVYLGNN YLRAFHALSE AAEVYFNAIQ ENSBTAP00000020331/1-529 QFYRSTMAIY KSILEQFNPA LENLVYLGNN YLRAFHALSE AAEVYFNAIQ 101 150 ENSTTRP00000005300/1-531 KIGEQALQSS TSQILGEILV QMSDTQRHLN SDLEVVVQTF HGDLLQHMEK ENSP00000371085/1-529 KIGERALQSP TSQILGEILV QMSDTQRHLN SDLEVVVQTF HGGLLQHMEK BACU019043/1-539 KIGEQALQSS TSQILGEILV QMSDTQRHLN SDLEVVVQTF HGDLLQHMEK bmy_01128T0/1-576 KIGEQALQSS TSQILGEILV QMSDTQRHLN SDLEVVVQTF HGDLLQHMEK ENSBTAP00000020331/1-529 KIGEQALQSS TSQILGEILV QMSDTQRHLN SDLEVVVQTF HGDLLQHMEK 151 200 ENSTTRP00000005300/1-531 NTKLDMQFIK DSRQHYEMEY RHRAANLEKC MSQLWRMERK RDKNAREMKE ENSP00000371085/1-529 NTKLDMQFIK DSRQHYELEY RHRAANLEKC MSELWRMERK RDKNVREMKE BACU019043/1-539 NTKLDMQFIK DSRQHYEMEY RHRAANLEKC MSQLWRMERK RDKNAREMKE bmy_01128T0/1-576 NTKLDMQFIK DSRQHYEMEY RHRAANLEKC MSQLWRMERK RDKNAREMKE ENSBTAP00000020331/1-529 NTKLDMQFIK DSRQHYEMEY RHRAANLEKS MSQLWRMERK RDKNAREMKE 201 250 ENSTTRP00000005300/1-531 SVNRLHAQMQ AFVSESQRAA ELEEKRRYRF LAEKHLLLSN TFLQFFGRAR ENSP00000371085/1-529 SVNRLHAQMQ AFVSESQRAA ELEEKRRYRF LAEKHLLLSN TFLQFFGRAR BACU019043/1-539 SVNRLHAQMQ AFVSESQRAA ELEEKRRYRF LAEKHLLLSN TFLQFFGRAR bmy_01128T0/1-576 SVNRLHAQMQ AFVSESQRAA ELEEKRRYRF LAEKHLLLSN TFLQFFGRAR ENSBTAP00000020331/1-529 SVNRLHAQMQ AFVSESQRAA ELEEKRRYRF LAEKHLLLSN TFLQFFGRAR 251 300 ENSTTRP00000005300/1-531 GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X-XXXXXXXX XXXXXXXX-X ENSP00000371085/1-529 GMLQNRVLLW KEQSEASRSP SRAHSPGLLG P-ALGPPYPS GRLTPTCL-D BACU019043/1-539 GMLQNRVLLW KEQSEASRNP SRAHSPGLLG PGPAAPPLPA PP-SPARFPS bmy_01128T0/1-576 GMLQNRVLLW KEQSEASRNP SRAHSPGLLG P-VLGPPYPS GRLTPTRL-D ENSBTAP00000020331/1-529 GMLQNRVLLW KEQSEASRSP SRAHSPGLLG P-VLGPPYPS GRLTPTRL-D 301 350 ENSTTRP00000005300/1-531 XPPRPL-EFG SPRSRHGSGS HGPEPTEARY ASQLEPD-RR SLPRTPSASS ENSP00000371085/1-529 MPPRPLGEFS SPRSRHGSGS YGTEP-DARP ASQLEPD-RR SLPRTPSASS BACU019043/1-539 QPQRPLGEFG SPRSRHGSGS RGPEPIEARS ASQLEPD-RR SLPRTPSASS bmy_01128T0/1-576 MPQRPLGEFG SPRSRHGSGS HGPEPTEARS ASQLEPD-RR SLPRTPSAC- ENSBTAP00000020331/1-529 MPQRALGEFG SPRSRHGSGS YGPEPAEARS ASQLEPDHRR SLPRTPSASS 351 400 ENSTTRP00000005300/1-531 LYSISTERSR SNSFGERPGC R-GGGGARRV RALVSHSEGA NHTLLRFSAG ENSP00000371085/1-529 LYSGSAQSSR SNSFGERPG- --GGGGARRV RALVSHSEGA NHTLLRFSAG BACU019043/1-539 LYSSSTERSR SNSFGERPGC R-GGGGARRV RALVSHSEGA NHTLLRFSAG bmy_01128T0/1-576 ----DTERSR SNSFGERPGC R-GGGGARRV RALVSHSEGA NHTLLRFSAG ENSBTAP00000020331/1-529 LYSSSTQRSR SNSFGERPGG GGGGGGARRV RALVSHSEGA NHTLLRFSAG 401 450 ENSTTRP00000005300/1-531 DVVEVLVPEA QNGWLYGKLE GSSTSGWFPE AYVKPLEELP MNPMNALNPV ENSP00000371085/1-529 DVVEVLVPEA QNGWLYGKLE GSSASGWFPE AYVKALEEGP VNPMTPVTPM BACU019043/1-539 DVVEVLVPEA QNGWLYGKLE GSSTSGWFPE AYVKPLEELP MNPVNPLNPV bmy_01128T0/1-576 DVVEVLVPEA QNGWLYGKLE GSSTSGWFPE AYVKPLEELP MNPVNPLNPV ENSBTAP00000020331/1-529 DVVEVLVPEA QNGWLYGKLE GSSSSGWFPE AYVKPLDELP VNPMNPLNPV 451 500 ENSTTRP00000005300/1-531 TSMNPTNPM- -----NPMSP MNELPS--XX XXXXXXXXXX XXXXXXXXXX ENSP00000371085/1-529 TSMTSMSPM- -----TPMNP GNELPS--RS YPLRGSHSLD DLLDRPGNSI BACU019043/1-539 TSMNPTNPLN PVTSVNPMSP MNELPS---- -----SHSLD DLLDRPGNST bmy_01128T0/1-576 TSMNPTNPLN PVTSVNPMSP MNELPS--RS YPLRGSHSLN DLLDRPGNST ENSBTAP00000020331/1-529 TSM------- -----NPRSP VNELPSRLRS YPLRGSHSLD DLLDRPGNST 501 550 ENSTTRP00000005300/1-531 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ENSP00000371085/1-529 APSEYWDGQS RSRTPSRVPS RAPSPAPPPL PSSRRSSMGS TAVATDVK-- BACU019043/1-539 ASSDYWDGQS RSRTPSRVLS RTPSPAPTPL PGSRRSSMGS MGAASDIKVS bmy_01128T0/1-576 APSDYWDGQS RSRTPSRVPS RTPSPAPTPL PGSRRSSMGS MGVASDVK-- ENSBTAP00000020331/1-529 ASSDYWDGQS RSRTPSHIPS RTPSPAPTPL PSSRRSSMGS MGVASDVK-- 551 600 ENSTTRP00000005300/1-531 ---------X XXXXXXXXXX XXXXXGTNPF ATVKLRPTVT NDRSAPLIH ENSP00000371085/1-529 ---------K LMSSEQYPPQ ELFPRGTNPF ATVKLRPTIT NDRSAPLIR BACU019043/1-539 PLPQSALNPG VVQWAGR--- -LETRGTNPF ATVKLRPTVT NDRSAPLIR bmy_01128T0/1-576 ---------K LMSWEQQPP- ELFPRGTNPF ATVKLRPTVT NDRSAPLIR ENSBTAP00000020331/1-529 ---------K LASWEQQPP- ELFPRGTNPF ATVKLRPTVT NDRSAPLIR