KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:09 2014 Check: 00 .. Name: ENSBTAP00000020344/1-403 Len: 742 Check: 4129 Weight: 1.00 Name: ENSP00000252483/1-538 Len: 742 Check: 3149 Weight: 1.00 Name: ENSTTRP00000007525/1-539 Len: 742 Check: 9193 Weight: 1.00 Name: bmy_15578T0/1-665 Len: 742 Check: 7633 Weight: 1.00 Name: BACU018255/1-519 Len: 742 Check: 5212 Weight: 1.00 // 1 50 ENSBTAP00000020344/1-403 ------MARA AALRPLR--L SPPTLPLLPL LLLLLRETGA QDVRVQVAAE ENSP00000252483/1-538 ------MARA AALLPSRSPP TPL---LWPL LLLLLLETGA QDVRVQVLPE ENSTTRP00000007525/1-539 ------MARD AALPPSK--L SPLKLPLLPL LLLLLRETGA QDVRVRAAAE bmy_15578T0/1-665 MARPGPEVSG SFTDPTS--P SPL------- ------SAGA QDVRVRAAAE BACU018255/1-519 -----PDLS- ---------L SPL------- ------SAGA QDVRVRAAAE 51 100 ENSBTAP00000020344/1-403 VRGNLGDTVE LPCHLLPSAP EIRVSQVTWL RLDAPEGKQN VAIFHPQYGR ENSP00000252483/1-538 VRGQLGGTVE LPCHLLPPVP GLYISLVTWQ RPDAPANHQN VAAFHPKMGP ENSTTRP00000007525/1-539 VRGQLGGTVE LPCHLLPPAP EIRVSQVTWL RLDAPEGNQN VAIFHPQYGP bmy_15578T0/1-665 VRGHLGATVE LPCHLLPPAP EIRVSQVTWL RLDAPEGNQN VAIFHPLYGP BACU018255/1-519 VRGHLGDTVE LPCHLLPPAP EIRVSQVTWL RLDAPEGNQN VAIFHPLYGP 101 150 ENSBTAP00000020344/1-403 SFPSPKPGKE RLSFVNTAPS SGAGQGSELE VRDATLSLRG LTVEDEGNYT ENSP00000252483/1-538 SFPSPKPGSE RLSFVSAKQS T--GQDTEAE LQDATLALHG LTVEDEGNYT ENSTTRP00000007525/1-539 SFPSPKPGKE RLSFVNAGQS TGAGQGTELE VRDATLALRG LTVEDEGNYT bmy_15578T0/1-665 SFPSPKPGKE RLSFVNAGQS TGAGQGTELE VRDATLALRG LTVEDEGNYT BACU018255/1-519 SFPSPKPGKE RLSFVNAGQS TGAGQGTELE VRDATLALRG LTVEDEGNYT 151 200 ENSBTAP00000020344/1-403 CEFATFPKGT SRGVTWLRVI AQPQNHAEKQ EVTFNLDPVP VARCVSAGGR ENSP00000252483/1-538 CEFATFPKGS VRGMTWLRVI AKPKNQAEAQ KVTFSQDPTT VALCISKEGR ENSTTRP00000007525/1-539 CEFATFPRGT SRGVTWLRVI AQPQNHAETQ EVTLSLDPVP VARCVSTGGR bmy_15578T0/1-665 CEFATFPRGT SRGVTWLRVI AQPQNHAETQ EVTLSLDPVP MARCVSTGGR BACU018255/1-519 CEFATFPRGT SRGVTWLRVI AQPQNHAETQ EVTLSLDPVP VARCVSSGGR 201 250 ENSBTAP00000020344/1-403 PPARVSWLSP LDGEAKETQG SGPLPGTVTV TSRYTVTPLS EADGVKVICK ENSP00000252483/1-538 PPARISWLSS LDWEAKETQV SGTLAGTVTV TSRFTLVPSG RADGVTVTCK ENSTTRP00000007525/1-539 PPARVSWLSP LDGEARESQV SRPLPGTVTV TSRFTLVPLG QADGVKITCK bmy_15578T0/1-665 PPARVSWLSP LVGEARESQE SGPLPGTVTV TSRFTLVPLG QADGVKVTCK BACU018255/1-519 PPARVSWLSS LDGEARESQV SGPLPGTVTV TSRFTLVPLG QADGVKVTCK 251 300 ENSBTAP00000020344/1-403 VEHESFQEPK LLPVILSVRY PPQVSISGYD DNWYIGRSEA TLNCNVRSKP ENSP00000252483/1-538 VEHESFEEPA LIPVTLSVRY PPEVSISGYD DNWYLGRTDA TLSCDVRSNP ENSTTRP00000007525/1-539 VEHESFEEPV LLPVTLSVRY PPEVSISGYD DNWYVGRSEA SLNCDVRSKP bmy_15578T0/1-665 VEHESFEEPV LLPVTLSVRY PPEVSISGYD DNW------- ---------- BACU018255/1-519 VEHESFEEPV LLPVTLSVRY PPEVSISGYD DNWYIGRSEA SLNCDVRSKP 301 350 ENSBTAP00000020344/1-403 EPTGYDWSTT SGVFPASAVA QGPKLIVHSV DRLFNTTFIC TVTNAVGTGQ ENSP00000252483/1-538 EPTGYDWSTT SGTFPTSAVA QGSQLVIHAV DSLFNTTFVC TVTNAVGMGR ENSTTRP00000007525/1-539 EPTGYDWSTT SGVFPASAVA QGPKLIVHSV DRLFNTTFIC TVTNAVGTGH bmy_15578T0/1-665 ---------T SGVFPASAVA QGPKLIVHSV DRLFNTTFIC TVTNAVGTGH BACU018255/1-519 EPTGYDWSTT SGVFPASAVA QGPKLIVHSV DRLFNTTFIC TVTNAVGTGH 351 400 ENSBTAP00000020344/1-403 AEQVVLVR-- ---------- ---------- ---------- ---------- ENSP00000252483/1-538 AEQVIFVR-- ---------- ---------- ---------- ---------- ENSTTRP00000007525/1-539 AEQVVLVR-- ---------- ---------- ---------- ---------- bmy_15578T0/1-665 AEQVVLVRDT PRASPRDVGP VVWGAGGGIL LVLLLLAGGS LAFILLRVRR BACU018255/1-519 AEQVVLVR-- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000020344/1-403 ---------- ---------- ---------- ---------- ---------- ENSP00000252483/1-538 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007525/1-539 ---------- ---------- ---------- ---------- ---------- bmy_15578T0/1-665 RRKSPGGGGD GSGGGSYDPK TQVFGNGGPV FWTPTAPGPL RPEGKDEEDE BACU018255/1-519 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000020344/1-403 ---------- ---------- ---------- ---------- ---------- ENSP00000252483/1-538 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007525/1-539 ---------- ---------- ---------- ---------- ---------- bmy_15578T0/1-665 EEEEDKAEKG LMLPPPPALE DDMESQLDGS LISRRAVYVA AWGRGAPRPG BACU018255/1-519 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000020344/1-403 ---------- ---------- ---------- ---------- ---------- ENSP00000252483/1-538 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007525/1-539 ---------- ---------- ---------- ---------- ---------- bmy_15578T0/1-665 ELGNGDPQHP PSQRLDLGSS LLWPHDTQEL INTLEENIGG CLVIHRTPSL BACU018255/1-519 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000020344/1-403 ---------G DAG------- ---------- ---------- ---------- ENSP00000252483/1-538 -ETPNTAGAG ATGGIIGGII AAIIATAVAA TGILICRQQR KEQTLQGAEE ENSTTRP00000007525/1-539 -ETPNTAGAG ATGGIIGGII AAIIATAVAA TGILICRQQR KEQRLQGAEE bmy_15578T0/1-665 GETPNTAGAG ATGGIIGGII AAIIATAVAA TGILICRQQR KEQRLQGAEE BACU018255/1-519 -ETPNTAGAG ATGGIIGGII AAIIATAVAA TGILICRQQR KEQRLQGAEE 601 650 ENSBTAP00000020344/1-403 ---------- ---------- ---------- -------DLS TP-------- ENSP00000252483/1-538 DEDLEGPPSY KPPTPKAKLE AQEMPSQLFT LGASEHSPLK TPYFDAGASC ENSTTRP00000007525/1-539 VEDLEGPPSY KPPTPEAKLE EPDMPSQLFT LGASEHNPLK TPYFDASVSC bmy_15578T0/1-665 EED------- ---------- ---------- -------PLK TPYFDASVSC BACU018255/1-519 EEDLEGPPSY KPPTPKAKLE EPEMPSQLFT LGASEHSPLK TPYFDASVSC 651 700 ENSBTAP00000020344/1-403 ---ESGRF-- ---------- --PGGGN-GS PLQYSSPENP MDRGAWQAAV ENSP00000252483/1-538 TEQEMPRYHE LPTLEERSGP LHPGATSLGS PIPVPPGPPA VEDVSLDLED ENSTTRP00000007525/1-539 AEQEMPRYHE LPTLEERSGP LLLGATNLGS PMLVPPGMPA LETVSLDLED bmy_15578T0/1-665 AEQEMPRYHE LPTLEERSGP LLLGATNLGS XMLVPPGPPA LERVSLDLED BACU018255/1-519 AEQEMPRYHE LPTLEERSGP LLLGATNLGS PMLVPPGPPA LERVSLDLED 701 750 ENSBTAP00000020344/1-403 HAVAESKIWL SD-------- ---------- ---------- -- ENSP00000252483/1-538 EEGEEEEEYL DKINPIYDAL SYSSPSDSYQ GKGFVMSRAM YV ENSTTRP00000007525/1-539 E--EEEEDYL DKINPIYDSL SYSSPSESYQ GKGFVMSRAM YV bmy_15578T0/1-665 D--EEEEDYL DKINPIYDSL SYSSPSESYQ GKGFVMSRAM YV BACU018255/1-519 D--EEEEYYL DKINPIYDSL SYSSPSESYQ GKGFVMSRAM YV