KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:11:21 2014 Check: 00 ..
Name: ENSBTAP00000020362/1-378 Len: 396 Check: 2792 Weight: 1.00
Name: ENSTTRP00000005100/1-381 Len: 396 Check: 9686 Weight: 1.00
Name: bmy_08359T0/1-381 Len: 396 Check: 1195 Weight: 1.00
Name: BACU013220/1-396 Len: 396 Check: 6388 Weight: 1.00
//
1 50
ENSBTAP00000020362/1-378 METGCWLLGG EFEDSVFEER RERRPGPPES YRAKRCEPQW FYEETGSSDD
ENSTTRP00000005100/1-381 METGCWLLGG EFEDSVFEER RERRPGPLAS YRAKLCEPQW FYEETGSSDD
bmy_08359T0/1-381 METGSWLLGG EFEDSVFEER RERRPGPLAS YRAKLCEPQW FYEETGSSDD
BACU013220/1-396 METGSWLLGG EFEDSVFEER RERRPGPLAS YRAKLCEPQW FYEETGSSDD
51 100
ENSBTAP00000020362/1-378 VEALTVQKFK GDLAYRRQEY QKALQEYSSI SEKLPSTNFA MKRDVQEGQA
ENSTTRP00000005100/1-381 VEALTIQKFK GDLAYRRQEY QKALQEYSSI SEKLPSTNFA MKRDVQEGQA
bmy_08359T0/1-381 VEVMTIQKFK GDLAYRRQEY QKALQEYSSI SEKLPSTNFA MKRDVQEGQA
BACU013220/1-396 VEALTIQKFK GDLAYRRQEY QKALQEYSSI SEKLPSTNFA MKRDVQEGQA
101 150
ENSBTAP00000020362/1-378 RCLVHLGRHK EALEIATNLE NKATNTDHLT TVLYLQFTIC SSLQNLEKTI
ENSTTRP00000005100/1-381 RCLVHLGRHE EALEIATNLE NKATNTDHLT TVLYLQFAIC SSLQNLEKTI
bmy_08359T0/1-381 RCLVHLGRHE EALEIATNLE NKATNTDHLT TVLYLQFAIC SSLQNLEKTI
BACU013220/1-396 RCLVHLGRHE EALEIATNLE NKATNTDHLT TVLYLQFAIC SSLQNLEKTI
151 200
ENSBTAP00000020362/1-378 FCLQKLISLH PFNPWNWGRL GEAYLNLGPV LSASLASSQK ENSFTSSDTA
ENSTTRP00000005100/1-381 FCLQKLISLH PFNPWNWGRL GEAYLNLEPV LAALLASSQK QNSFTSSDKA
bmy_08359T0/1-381 FCLQKLISLH PFNPWNWGRL GEAYLNLEPA LAPLLASSQK QNSFTSSDKA
BACU013220/1-396 FCLQKLISLH PFNPWNWGRL GEAYLHLEPA LAALLASSQK QNSFTSSDKA
201 250
ENSBTAP00000020362/1-378 IKSSFPHSGK DCLLCFPETL PEG---SVEV SSGNKQRNEK ALKNIQNRMT
ENSTTRP00000005100/1-381 IKSSCPHSGK DCLLCFPEML PESSALSVET SSGNNQKNEK ALKNIQNCMA
bmy_08359T0/1-381 IKSSCPHSGK DSLLCFPEML PESSALSVET SSGNNQKNEK AFKNIQNCMA
BACU013220/1-396 IKSSCPHSGK DSLLCFPEML PESSALSVET SSGNNQKNEK AFKNIQNCMA
251 300
ENSBTAP00000020362/1-378 EERAAVLLET QMKACASFIR TRLLLQLAQC QQTSFALERN ----------
ENSTTRP00000005100/1-381 EERAAVLLET QMKACASFIR TRLLLQLAQS QQTSFALERN ----------
bmy_08359T0/1-381 EERAAVLLET QMKACASFIR TRLLLQLAQS QQTSFALERN ----------
BACU013220/1-396 EERAAVLLET QMKACASFTR TRLLLQLAQS QQTSFALERN XXXXXXXXXX
301 350
ENSBTAP00000020362/1-378 -----LKTQQ EIEDKMKRFS FKEDTLLLIA EVMGEDIVPE KIRDEVHTEV
ENSTTRP00000005100/1-381 -----LKTQQ EIEAKMKGFS FKEDTLLLIA EVMGEDIVPE KIRDEVHTEV
bmy_08359T0/1-381 -----LKTQQ EIEAKMKGFS FKEDTLLLIA EVMGEDIVPE KIKDEVHTEV
BACU013220/1-396 XXXXXLKTQQ EIEGKMKGFS FKEDTLLLIA EVMGEDIVPE KIRDEVHTEV
351 400
ENSBTAP00000020362/1-378 KCVGPAALTA LVIGSSKEFE DKWFRKIKDH FCPFENQFHT EIQILP
ENSTTRP00000005100/1-381 KCVGPAALTA LVIASSKEFE DKWFRKIKDH FCPFENQFHT EIQMLV
bmy_08359T0/1-381 KCVGPAALTA LVIASSKEFE DKWFRKIKDH FCPFENQFHT EIQMLV
BACU013220/1-396 KCVGPAALTA LVIASSKEFE DKWFRKIKDH VCPFENQFHT EIQMLV