KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:25 2014 Check: 00 .. Name: ENSP00000429190/1-282 Len: 336 Check: 6400 Weight: 1.00 Name: ENSBTAP00000020390/1-215 Len: 336 Check: 5913 Weight: 1.00 Name: ENSTTRP00000000513/1-285 Len: 336 Check: 679 Weight: 1.00 Name: bmy_02278T0/1-287 Len: 336 Check: 9986 Weight: 1.00 Name: BACU011596/1-324 Len: 336 Check: 115 Weight: 1.00 // 1 50 ENSP00000429190/1-282 MALEAAGGPP EETLSLWKRE QARLKAHVVD RDTEAWQRDP AFSGLQRVGG ENSBTAP00000020390/1-215 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000513/1-285 MARKAAGRPP EETLSLWKRE QALLKTLVVD RDTEAWQRDP AFSGLQRVGG bmy_02278T0/1-287 MARKVVGRPP EETLSLWKRE QGLLKTLVVD RDTEAWQRDP AFSGLQRVGG BACU011596/1-324 MARKVVGRPA EETLSLWKRE QALLKTLVVD RDTEAWQRDP AFSGLQRVGG 51 100 ENSP00000429190/1-282 VDVSFVKGDS VRACASLVVL SFPELEVVYE ESRMVSLTAP YVSGFLAFRE ENSBTAP00000020390/1-215 ---------- ---------- ---------- ---MVTLTAP YVSGFLAFRE ENSTTRP00000000513/1-285 VDVSFVKGDS VSACASLVVL SYPELEVMYE DCRMVSLTAP YVSGFLAFRE bmy_02278T0/1-287 VDVSFVKGDS VSACASLVVL SYPELEVMYE DCRMVSLTAP YVSGFLAFRE BACU011596/1-324 VDVSFVKGDS VSACASLVVL SYPELEVMYE DCRMVSLTAP YVSGFLAFRE 101 150 ENSP00000429190/1-282 VPFLLELVQQ LREKEPGLMP QVLLVDGNGV LHHRGFGVAC HLGVLTDLPC ENSBTAP00000020390/1-215 LPFLVDAVQQ LRQREPRLMP QVLFVDGNGV LHHRGFGVAC HLGVLTDLPC ENSTTRP00000000513/1-285 VPFLVDAVQQ LREKEPRLMP QVLFVDGNGV LHHRGFGVAC HLGVVTDLPC bmy_02278T0/1-287 VPFLVDAVQQ LREKEPRLMP QVLFVDGNGV LHHRGFGVAC HLGVLTDLPC BACU011596/1-324 VPFLVDAVQQ LREKEPRLMP QVLFVDGNGV LHHR------ ------DLPC 151 200 ENSP00000429190/1-282 VGVAKKLLQV DGLENNALHK EKIRLLQTRG DSFPLLGDSG TVLGMALRSH ENSBTAP00000020390/1-215 IGVAKKLLQV DGLENNALHK EKIQLLKAGG DSFPLMGGSG TVLGRALRSH ENSTTRP00000000513/1-285 IXXXXXXXXX XXXXXXXXXX XXIRLLKAGG DSFPLMGGSG TVLGMALKSH bmy_02278T0/1-287 IGVAKKLLQV DGLENNALHK EKIRLLKAGG DSFPLMGGSG TVLGMALKSH BACU011596/1-324 IGVAKKLLQV DGLENNALHK EKIRLLKAGG DSFPLMGGSG TVLGMALKSH 201 250 ENSP00000429190/1-282 DRSTRPLYIS VGHRMSLEAA VRLTCCCCRF RIPEPVRQAD ICSREHIRKS ENSBTAP00000020390/1-215 DHSTKPLYVS VGHKISLEAA VRLTHSCCKF RIPEPVRQAD IRSRDYIRRT ENSTTRP00000000513/1-285 DHSTKPLYVS VGHKMSLEAA VRLTHGCCKF RIPEPVRQAD IRSRDYIRRT bmy_02278T0/1-287 DHSTKPLYVS VGHKMSLEAA VRLTHGCCKF RIPEPVRQAD IRSRDYIRRT BACU011596/1-324 DHSTKPLYVS VGHKMSLEAA VRLTHGCCKF RIPEPVRQAD IRSRDYIRRT 251 300 ENSP00000429190/1-282 LGLPGPPTP- --RSPKAQRP VACPKGDSGE SSALC----- ---------- ENSBTAP00000020390/1-215 QEVQGVPAPP SGRSKEAQRP KACPQGVSEE PAGTS----- ---------- ENSTTRP00000000513/1-285 LGVQGAPALR PERSKKAQRP KACPQGASEE PADTC----- ---------- bmy_02278T0/1-287 LGVQGAPALQ PERCHYQEQE GTEAKGV--- ---------- ---------- BACU011596/1-324 LGVQGAPALQ PERSKKAQRP KACPQGVSEE PAVSCCVVNC SVKSTWQRTE 301 350 ENSP00000429190/1-282 ---------- ---------- ---------- ------ ENSBTAP00000020390/1-215 ---------- --KGTPTGGK ACPRF----- ------ ENSTTRP00000000513/1-285 ---------- ---------- ---------- ------ bmy_02278T0/1-287 ---------- -----PPGSL RRARR----- ------ BACU011596/1-324 PTCQSPCEGA ILEVHPPALL KPSDAPSPGC HLTATS