KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:33 2014 Check: 00 .. Name: ENSTTRP00000004710/1-1233 Len: 1306 Check: 1777 Weight: 1.00 Name: ENSP00000369274/1-1235 Len: 1306 Check: 8642 Weight: 1.00 Name: ENSBTAP00000020422/1-1235 Len: 1306 Check: 7201 Weight: 1.00 Name: BACU005526/1-1210 Len: 1306 Check: 4235 Weight: 1.00 Name: bmy_00601T0/1-1177 Len: 1306 Check: 4714 Weight: 1.00 // 1 50 ENSTTRP00000004710/1-1233 MRSRSNSGVR -DGYARLVQQ TILCYQNPVT GLLSASHEQK DAWVRDNIYS ENSP00000369274/1-1235 MRSRSNSGVR LDGYARLVQQ TILCYQNPVT GLLSASHEQK DAWVRDNIYS ENSBTAP00000020422/1-1235 MRSRSNSGVR LDGYARLVQQ TILCYQNPIT GLMSASHEQK DAWVRDNIYS BACU005526/1-1210 ---------- ---------- ------NPVT GLLSASHEQK DAWVRDNIYS bmy_00601T0/1-1177 ---------- ---------- MLMLYLNPVT GLLSASHEQK DAWVRDNIYS 51 100 ENSTTRP00000004710/1-1233 ILAVWGLGMA YRKNADRDED KAKAYELEQN VVKLMRGLLQ CMMRQVNKVE ENSP00000369274/1-1235 ILAVWGLGMA YRKNADRDED KAKAYELEQN VVKLMRGLLQ CMMRQVAKVE ENSBTAP00000020422/1-1235 ILAVWGLGMA YRKNADRDED KAKAYELEQN VVKLMRGLLQ CMMRQVDKVE BACU005526/1-1210 ILAVWGLGMA YRKNADRDED KAKAYELEQN VVKLMRGLLQ CMMRQVDKVE bmy_00601T0/1-1177 ILAVWGLGMA YRKNADRDED KAKAYELEQN VVKLMRGLLQ CMMRQVDKVE 101 150 ENSTTRP00000004710/1-1233 RFKHTQSTKD SLHAKYDTAT CSTVVGDDQW GHLQVDATSL FLLFLAQMTA ENSP00000369274/1-1235 KFKHTQSTKD SLHAKYNTAT CGTVVGDDQW GHLQVDATSL FLLFLAQMTA ENSBTAP00000020422/1-1235 RFKHTQSTED SLHAKYNTAT CSTVVGDDEW GHLQVDATSL FLLFLAQMTA BACU005526/1-1210 RFKHTQSTKD SLHAKYDTAT CSTVVGDDQW GHLQVDATSL FLLFLAQMTA bmy_00601T0/1-1177 RFKHTQSTKD SLHAKYDTAT CSTVVGDDQW GHLQVDATSL FLLFLAQMTA 151 200 ENSTTRP00000004710/1-1233 SGLRIIFTLD EVAFIQNLVF YIEAAYKVAD YGMWERGDKT NQGIPELNAS ENSP00000369274/1-1235 SGLRIIFTLD EVAFIQNLVF YIEAAYKVAD YGMWERGDKT NQGIPELNAS ENSBTAP00000020422/1-1235 SGLRIIFTLD EVAFIQNLVF YIEAAYKVAD YGMWERGDKT NQGIPELNAS BACU005526/1-1210 SGLRIIFTLD EVAFVQNLVF YIEAAYKVAD YGMWERGDKT NQGIPELNAS bmy_00601T0/1-1177 SGLRIIFTLD EVAFIQNLVF YIEAAYKVAD YGMWERGDKT NQGIPELNAS 201 250 ENSTTRP00000004710/1-1233 SVGMAKAALE AIDELDLFGA HGGRKSVIHV LPDEVEHCQS ILFSMLPRAS ENSP00000369274/1-1235 SVGMAKAALE AIDELDLFGA HGGRKSVIHV LPDEVEHCQS ILFSMLPRAS ENSBTAP00000020422/1-1235 SVGMAKAALE AIDELDLFGA HGGRKSVIHV LPDEVEHCQS ILFSMLPRAS BACU005526/1-1210 SVGMAKAALE AIDELDLFGA HGGRKSVIHV LPDEVEHCQS ILFSMLPRAS bmy_00601T0/1-1177 SVGMAKAALE AIDELDLFGA RGGRKSVIH- ---------S ILFSMLPRAS 251 300 ENSTTRP00000004710/1-1233 TSKEIDAGLL SIISFPAFAV EDVNLVNVTK NEIISKLQGR YGCCRFLRDG ENSP00000369274/1-1235 TSKEIDAGLL SIISFPAFAV EDVNLVNVTK NEIISKLQGR YGCCRFLRDG ENSBTAP00000020422/1-1235 TSKEIDAGLL SIISFPAFAV EDVNLVNVTK NEIISKLQGR YGCCRFLRDG BACU005526/1-1210 TSKEIDAGLL SIISFPAFAV EDVNLVNVTK NEIISKLQ-- ----RVYLFG bmy_00601T0/1-1177 TSKEIDAGLL SIISFPAFAV EDVNLVNVTK NEIISKLQGR YGCCRFLRDG 301 350 ENSTTRP00000004710/1-1233 YKTPREDPNR LHYDPAELKL FENIECEWPV FWTYFIIDGV FNGDAVQVQE ENSP00000369274/1-1235 YKTPREDPNR LHYDPAELKL FENIECEWPV FWTYFIIDGV FSGDAVQVQE ENSBTAP00000020422/1-1235 YKTPREDPNR LHYDPAELKL FENIECEWPV FWTYFIIDGV FNGDAVQVQE BACU005526/1-1210 SRTQTDCIMT LLXXXXXXX- FENIECEWPV FWTYFIIDGV FNGDAVQVQE bmy_00601T0/1-1177 YKTPREDPNR LHYDPAELKL FENIECEWPV FWTYFXIDGV FNGDAVQVQE 351 400 ENSTTRP00000004710/1-1233 YREALEGILI RGKNGIHLMP ELYAVPPNKV DEEYKNPHTV DRVPLGKLPH ENSP00000369274/1-1235 YREALEGILI RGKNGIRLVP ELYAVPPNKV DEEYKNPHTV DRVPMGKVPH ENSBTAP00000020422/1-1235 YREALEGILI RGNNGVHLLP ELYAIPPDKV DEEYKNPHTV DRVPLGKVPH BACU005526/1-1210 YREALEGILI RGKNGIHLVP ELYAIPPNKV DEEYKNPHTV DRVPLGKVPH bmy_00601T0/1-1177 YREALEGILI RGKNGIHLVP ELYAIPPNKV DEEYKNPHTV DRVPLGKVPH 401 450 ENSTTRP00000004710/1-1233 LWGQSLYILS SLLAEGFLAT GEIDPLNRRF STSVKPDVVV Q--------- ENSP00000369274/1-1235 LWGQSLYILS SLLAEGFLAA GEIDPLNRRF STSVKPDVVV Q--------- ENSBTAP00000020422/1-1235 LWGQSLYILS SLLAEGFLAA GEIDPLNRRF STSVKPDVVV Q--------- BACU005526/1-1210 LWGQSFHILS SLLAEGFLAT GEIDPLNRRF STSVKPDVVV QGLLPFAKAL bmy_00601T0/1-1177 PWGQSLYILS SLLAEGFLAT GEIDPLNRRF STSVKPDVVV Q--------- 451 500 ENSTTRP00000004710/1-1233 ---------- --VTVLAENK HIKELLRKHG VSLQSIADIH PIRVQPGRIL ENSP00000369274/1-1235 ---------- --VTVLAENN HIKDLLRKHG VNVQSIADIH PIQVQPGRIL ENSBTAP00000020422/1-1235 ---------- --VTVLAENN HIKELLRKHG VNVQSIADIH PIRVQPGRIL BACU005526/1-1210 SLLLKASSTG TAVTVLAENN HIKELLRKHG VSIQSIADIH PIRVQPGRIL bmy_00601T0/1-1177 ---------- --VTVLAENN HIKELLRKHG VSIQSIADIR PIRVQPGRIL 501 550 ENSTTRP00000004710/1-1233 SHIYAKLGRN KNMKLSGRPY RHIGVLGTSK LYVIRNQIFT FTPQFTDQHH ENSP00000369274/1-1235 SHIYAKLGRN KNMNLSGRPY RHIGVLGTSK LYVIRNQIFT FTPQFTDQHH ENSBTAP00000020422/1-1235 SHIYAKLGRN KNMRLSGRPY RHIGVLGTSK LYVIRNQIFT FTPQFTDQHH BACU005526/1-1210 SHIYAKLGRN KNMKLSGRPY RHIGVLGTSK LYVIRNQIFT FTPQFTDQHH bmy_00601T0/1-1177 SHIYAKLGRN KNMKLSGRPY RHIGVLGTSK LYVIRNQIFT FTPQFTDQHH 551 600 ENSTTRP00000004710/1-1233 FYLALDNEMI VEMLRIELAY LCTCWRMTGR PTLTFPITHT MLTNDGSDIH ENSP00000369274/1-1235 FYLALDNEMI VEMLRIELAY LCTCWRMTGR PTLTFPISRT MLTNDGSDIH ENSBTAP00000020422/1-1235 FYLALDNEMI VEMLRIELAY LCTCWRMTGR PTLTFPITHT MLTNDGSDIH BACU005526/1-1210 FYLALDNEMM VEMLRIELAH LCTCWRMTGR PTLTFPVTHT MLTNDGSDIH bmy_00601T0/1-1177 FYLALDNEMM VEMLRIELAH LCTCWRMTGR PTLTFPQT-- ---------- 601 650 ENSTTRP00000004710/1-1233 SAVLSTIRKL EDGYFGGARV KLGSLSEFLT TSFYTYLTFL DPDCDEKLFD ENSP00000369274/1-1235 SAVLSTIRKL EDGYFGGARV KLGNLSEFLT TSFYTYLTFL DPDCDEKLFD ENSBTAP00000020422/1-1235 SAVLATIRKL EDGYFGGARV KLGSLSEFLT TSFYTYLTFL DPDCDEKLFD BACU005526/1-1210 SAVLSTIRKL EDGYFGGARV KLGSLSEFLT TSFYTYLTFL DPDCDEKLFD bmy_00601T0/1-1177 ---MAQIFIL --------LV KLGSLSEFLT TSFYTYLTFL DPDCDEKLFD 651 700 ENSTTRP00000004710/1-1233 DTSEGSFSPD SDSDLGGYFE DNYNQESQDE LDQYISHLLQ STSSKCYLPP ENSP00000369274/1-1235 NASEGTFSPD SDSDLVGYLE DTCNQESQDE LDHYINHLLQ STSLRSYLPP ENSBTAP00000020422/1-1235 DASEGTFSPD SDSDLGGYLE DTYNQESQDE LDQYINHLLQ STSSKCYLPP BACU005526/1-1210 DASEGSFSLD SDSDLGGYLE DTYNQ----- ---------- ---------- bmy_00601T0/1-1177 DASEGIFSPD SDSDLGGYLE DTYNQESQDE LDQYINHLLQ STSSKCYLPP 701 750 ENSTTRP00000004710/1-1233 LCKKTEDSHV FSAIYSTRDI LSVMAKAKGL EIPFVPMALP TKVLSAHRKS ENSP00000369274/1-1235 LCKNTEDRHV FSAIHSTRDI LSVMAKAKGL EVPFVPMTLP TKVLSAHRKS ENSBTAP00000020422/1-1235 LCKKTEDNQV FSAIHSTRDI LSVMAKAKGL EIPFVPMALP TKVLSAHRKS BACU005526/1-1210 ---------- ---------- ---------- ---VVPMALP TKVLSAHRKS bmy_00601T0/1-1177 LRKKTEDSHV FSAIYSTRDI LSAMAKAK-- ---VVPMALP TKVLSAHRKS 751 800 ENSTTRP00000004710/1-1233 LNLVDCPQPL LKK------- ---------- ---------- ---------- ENSP00000369274/1-1235 LNLVDSPQPL LEK------- ---------- ---------- ---------- ENSBTAP00000020422/1-1235 LNLVDSPQPL LKK------- ---------- ---------- ---------- BACU005526/1-1210 LNLVDSPQPL LKKFSLLQTS TNTMIHRSEI YTKSPKRYNE NLKHSTAAEF bmy_00601T0/1-1177 LNLVDSPQLL LKK------- ---------- ---------- ---------- 801 850 ENSTTRP00000004710/1-1233 ---APEDDFQ FPRDDHGNID CEKLAEQLKD CSNLQDQADI LYILYVIKGP ENSP00000369274/1-1235 ---VPESDFQ WPRDDHGDVD CEKLVEQLKD CSNLQDQADI LYILYVIKGP ENSBTAP00000020422/1-1235 ---APEDDFQ FPRDDHGDVD CEKLVEQLKD CSNLQDQADI LYILYVIKGP BACU005526/1-1210 QDQAPEDDFQ FPRDDHGDVD CEKLTEQLKD CSNLQDQADI LYILYVIKGP bmy_00601T0/1-1177 ---APEDDFQ FPRDDHGDID CEKLTEQLKD CSNLQDQADI LYILYVIKGP 851 900 ENSTTRP00000004710/1-1233 SWDTNLSGQH GVTVHNLLSE LYGKAG-NQE WGLIRYISGL LKKKVEVLAE ENSP00000369274/1-1235 SWDTNLSGQH GVTVQNLLGE LYGKAGLNQE WGLIRYISGL LRKKVEVLAE ENSBTAP00000020422/1-1235 SWDTNLSGQH GVTVHNLLSE LYAKAGLNQE WGLIRYISGL LRKKVEVLAE BACU005526/1-1210 GWDTCLSGQH GVTVHNLLSE LYGKAGLNQE WGLIRYISGL LKKKVEVLAE bmy_00601T0/1-1177 GWDTNLSGQH GVTVHNLLSE LYGKAGLNQE WGLIRYISGL LKKKVEVLAE 901 950 ENSTTRP00000004710/1-1233 ACTDLLSHQK QLTVGLPPEP REKTISAPLP PEELTELIYE ASGQDISIAV ENSP00000369274/1-1235 ACTDLLSHQK QLTVGLPPEP REKIISAPLP PEELTKLIYE ASGQDISIAV ENSBTAP00000020422/1-1235 ACTDLLSHQK QLTVGLPPEP REKTISAPLP PEELTKLIYE ASGQDISIAV BACU005526/1-1210 ACTDLLSHQK QLTVGLPPEP REKTISAPLP PEELTELIYE ASGQDISIAV bmy_00601T0/1-1177 ACTDLLSHQK QLTVGLPPEP REKTISAPLP PEELTELIYE ASGQDISIAV 951 1000 ENSTTRP00000004710/1-1233 LTQEIVVYLA MYVRAQPSLF VEMLRLRVGL IIQVMATELA RSLNCSGEEA ENSP00000369274/1-1235 LTQEIVVYLA MYVRAQPSLF VEMLRLRIGL IIQVMATELA RSLNCSGEEA ENSBTAP00000020422/1-1235 LTQEIVVYLA MYVRAQPSLF VEMLRLRIGL IIQVMATELA RSLNCSGEEA BACU005526/1-1210 LTQEIVVYLA MYVRAQPSLF VEMLRLRIGL IIQVMATELA RSLNCSGEEA bmy_00601T0/1-1177 LTQEIVVYLA MYVRAQPSLF VEMLRLRIGL IIQVMATELA RSLNCSGEEA 1001 1050 ENSTTRP00000004710/1-1233 SESLMNLSPF DMKNLLHHIL SGKEFGVERS VRPIHSSTSS PAISIHEVGH ENSP00000369274/1-1235 SESLMNLSPF DMKNLLHHIL SGKEFGVERS VRPIHSSTSS PTISIHEVGH ENSBTAP00000020422/1-1235 SESLMNLSPF DMKNLLHHIL SGKEFGVERS MRPIHSSTPS PAVSIHEVGH BACU005526/1-1210 SESLMNLSPF DMKNLLHHIL SGKEFGVERS VRPIHSSTSS PAISIHEVGH bmy_00601T0/1-1177 SESLMNLSPF DMKNLLHHIL SGKEFGVERS VRPIHSSTSS PAISIHEVGH 1051 1100 ENSTTRP00000004710/1-1233 TGVTKTERSG INRLRSEMKQ MTRRFSADEQ L--------F SVSQAPSGSA ENSP00000369274/1-1235 TGVTKTERSG INRLRSEMKQ MTRRFSADEQ F--------F SVGQAASSSA ENSBTAP00000020422/1-1235 TGVTKTERSG INRLRSEMKQ MTRRFSADEQ L--------I SVSQAASSSA BACU005526/1-1210 TGATKTERSG INRLRSEMKQ MTRRFSADEQ VKPLCLVSSF TVLHVLSGLN bmy_00601T0/1-1177 TGATKTERSG INRLRSEMKQ MTRRLSADEQ L--------F SVSQAPAGSA 1101 1150 ENSTTRP00000004710/1-1233 HSSKSVRSST PSSPT--GTS SSDSGGHHIG WGEQQGQWLR RRRLDGAINR ENSP00000369274/1-1235 HSSKSARSST PSSPT--GTS SSDSGGHHIG WGERQGQWLR RRRLDGAINR ENSBTAP00000020422/1-1235 RSSKSARSST PSSPT--GTS SSDSGRQHMG WGERQGQWLR RRRLDGAINR BACU005526/1-1210 GESK-ARSST PSSPSPTGTS SSDSGGHHIG WGERQGQWLR RRRLDGAINR bmy_00601T0/1-1177 HSSKSLRSST PSSPT--GTS SSDSGGHHIG WGERQGQWLR RRRLDGAINR 1151 1200 ENSTTRP00000004710/1-1233 VPVGFYQKVW QILQKCHXXX XXXXXXXXXX XXXMTPQEIK FAVHVESVLN ENSP00000369274/1-1235 VPVGFYQRVW KILQKCHGLS IDGYVLPSST TREMTPHEIK FAVHVESVLN ENSBTAP00000020422/1-1235 VPVGFYQKVW KILQKCHGLS IDGYVLPSST TQEMTPQEIK FAVHVESVLN BACU005526/1-1210 VPVGFYQKVW KILQKCHGLS IDGYVLPSST TREMTPQEIK FAVHV----X bmy_00601T0/1-1177 VPVGFYQKVW KILQKCHGLS IDGYVLPSST TREMTPQEIK FAVHVESVLN 1201 1250 ENSTTRP00000004710/1-1233 RVPQPEYRQL LVEAIMVLTL LSDTEMNSIG GIIHVDQIVH TANQLFLQDQ ENSP00000369274/1-1235 RVPQPEYRQL LVEAIMVLTL LSDTEMTSIG GIIHVDQIVQ MASQLFLQDQ ENSBTAP00000020422/1-1235 RVPQPEYRQL LVEAIMVLTL LSDTEMNSIG GIIHVDQIVH MANQLFLQDQ BACU005526/1-1210 XVPQPEYRQL LVEATMVLTL LSDTEMNSIG GIIHVDQIVH MANQLFLQDQ bmy_00601T0/1-1177 RVPQPEYRQL LVEAIMVLTL LSDTEMNSIG GIIHVDQIVH MANQLFLQDQ 1251 1300 ENSTTRP00000004710/1-1233 MSIGATDTLE KDQATGICHF FYDSAPSGAY GTMTYLTKAV ASHLQELLPN ENSP00000369274/1-1235 VSIGAMDTLE KDQATGICHF FYDSAPSGAY GTMTYLTRAV ASYLQELLPN ENSBTAP00000020422/1-1235 VSSGATDTLE KDQATGICHF FYDSAPSGAY GTMTYLTKAV ASHLQELLPN BACU005526/1-1210 MSIGATDTLE KDQATGICHF FYDSAPSGAY GTMTYLTKAV ASHLQELLPS bmy_00601T0/1-1177 MSIGATDTLE KDQATGICHF FYDSAPSGAY GTMTYLTKAV ASHLQELLPN 1301 1350 ENSTTRP00000004710/1-1233 SGCHMQ ENSP00000369274/1-1235 SGCQMQ ENSBTAP00000020422/1-1235 SGCQMQ BACU005526/1-1210 SGCQMQ bmy_00601T0/1-1177 SGCQMQ