KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:35 2014 Check: 00 .. Name: ENSP00000317817/1-860 Len: 860 Check: 353 Weight: 1.00 Name: ENSBTAP00000020433/1-860 Len: 860 Check: 6311 Weight: 1.00 Name: bmy_04066T0/1-564 Len: 860 Check: 3736 Weight: 1.00 Name: BACU016269/1-856 Len: 860 Check: 7735 Weight: 1.00 Name: ENSTTRP00000015604/1-856 Len: 860 Check: 4767 Weight: 1.00 // 1 50 ENSP00000317817/1-860 MTEGTKKTSK KFKFFKFKGF GSLSNLPRSF TLRRSSASIS RQSHLEPDTF ENSBTAP00000020433/1-860 MTEGTKKASK KFKFFKFKGF GSLSNLPRSF TLRRSLAPNS IRPQVEADTF bmy_04066T0/1-564 MTAVGRRC-- ---------- ---------- ---------- ---------- BACU016269/1-856 MTEGTKKASK KFKFFKFKGF GSLSNLPRSF TLRRSLASTS IRPHLEADTF ENSTTRP00000015604/1-856 MTEGTKKASK KFKFFKFKGF GSLSNLPRSF TLRRSLASTS IRPHLEADTF 51 100 ENSP00000317817/1-860 EATQDDMVTV PKSPPAYARS SDMYSHMGTM PRPSIKKAQN SQAARQAQEA ENSBTAP00000020433/1-860 DATQDDMVTV PKSPPAYARS SDMYSHMGTM PRPSIKKAQG KQATQKAQEV bmy_04066T0/1-564 ---------- ---------- ---------- ---------- ---------- BACU016269/1-856 DATQDDMVTV PKSPPAYARS SDMYSHMGTM PRPSIKKVRD QQATQEAPEV ENSTTRP00000015604/1-856 DATQDDMVTV PKSPPAYARS SDMYSHMGTM PRPSIKKVRD QQATQEAQEV 101 150 ENSP00000317817/1-860 GPKPNLVPGG VPDPPGLEAA KEVMVKATGP LEDTPAMEPN PSAVEVDPIR ENSBTAP00000020433/1-860 GPEPQVVPRS LPDPPGLEAA EKVVPGTIAS REDTPTVGPN PSAVEVDPTR bmy_04066T0/1-564 ---------- ---------- ---------- ----PALGPR ---------- BACU016269/1-856 GPEPHVVPRG LPDPPGLEAA KKVVVGTNAP VEDTPAVGPN PSAVEVGTMR ENSTTRP00000015604/1-856 GPEPHVVPRG LPDPSGLEAA KKVVVGTDAP VEDTPAVGPN PSAMEVGPMR 151 200 ENSP00000317817/1-860 KPEVPTGDVE EERPPRDVHS ERAAGEPEAG SDYVKFSKEK YILDSSPEKL ENSBTAP00000020433/1-860 KPEDARPDTE EGRDPKNVPS ERATAEPEAG GDYVKFSKEK YILDSSPEKL bmy_04066T0/1-564 ---------- ---------- -GATGELEAG GDYVKFSKEK YILDSSPEKL BACU016269/1-856 KPEEPRADTE EERDPRNVLS ERATGELEAG GDYVKFSKEK YILDSSPEKL ENSTTRP00000015604/1-856 KPEDPSADTE EERDPRNVVS ERATGEPEAG GDYVKFSKEK YILDSSPEKL 201 250 ENSP00000317817/1-860 HKELEEELKL SSTDLRSHAW YHGRIPREVS ETLVQRNGDF LIRDSLTSLG ENSBTAP00000020433/1-860 HKELEEELKL SSTDLRSHAW YHGRIPREVS ETLVQRNGDF LIRDSLTSLG bmy_04066T0/1-564 HKELEEELKL SSTDLRSHAW YHGRIPREVS ETLVQRNGDF LIRDSLTSLG BACU016269/1-856 HKELEEELKL SSTDLRSHAW YHGRIPREVS ETLVQRNGDF LIRDSLTSLG ENSTTRP00000015604/1-856 HKELEEELKL SSTDLRSHAW YHGRIPREVS ETLVQRNGDF LIRDSLTSLG 251 300 ENSP00000317817/1-860 DYVLTCRWRN QALHFKINKV VVKAGESYTH IQYLFEQESF DHVPALVRYH ENSBTAP00000020433/1-860 DYVLTCRWRN QALHFKINKV VVKAGESYTH IQYLFEQESF DHVPALVRYH bmy_04066T0/1-564 DYVLTCRWRN QALHFKINKV VVKAGESYTH IQYLFEQESF DHVPALVRYH BACU016269/1-856 DYVLTCRWRN QALHFKINKV VVKAGESYTH IQYLFEQESF DHVPALVRYH ENSTTRP00000015604/1-856 DYVLTCRWRN QALHFKINKV VVKAGESYTH IQYLFEQESF DHVPALVRYH 301 350 ENSP00000317817/1-860 VGSRKAVSEQ SGAIIYCPVN RTFPLRYLEA SYGLGQGSSK PASPVSPSGP ENSBTAP00000020433/1-860 VGSRKAVSEQ SGAIIYCPVN RTFPLRYLEA CYGLGQGGGK AASPASPSGP bmy_04066T0/1-564 VGSRKAVSEQ SGAIIYCPVN RTFPLRYLEA CYGLGQGSGK ATSPASPSGP BACU016269/1-856 VGSRKAVSEQ SGAIIYCPVN RTFPLRYLEA CYGLGQGSGK ATSPASPSGP ENSTTRP00000015604/1-856 VGSRKAVSEQ SGAIIYCPVN RTFPLRYLEA CYGLGQGSGK AASPASPSGP 351 400 ENSP00000317817/1-860 KGSHMKRRSV TMTDGLTADK VTRSDGCPTS TSLPRPRDSI RSCALSMDQI ENSBTAP00000020433/1-860 KGSHMKRRSV TMTDGLTADK VTRSDGCPTS TSLPHPRESI RNCALSMDQI bmy_04066T0/1-564 KGSHMKRRSV TMTDGLTADK VTRSDGCPTS TSLPHPRESI RNCALSMDQI BACU016269/1-856 KGSHMKRRSV TMTDGLTADK VTRSDGCPTS TSLPHPRESI RNCALSMDQI ENSTTRP00000015604/1-856 KGSHVKRRSV TMTDGLTADK VTRSDGCPTS TSLPHPRESI RNCALSMDQI 401 450 ENSP00000317817/1-860 PDLHSPMSPI SESPSSPAYS TVTRVHAAPA APSATALPAS PVARRSSEPQ ENSBTAP00000020433/1-860 QDLHSPMSPI SESPSSPAYS TVTRVHAAPA APSATALPAS PVTRRSSEPQ bmy_04066T0/1-564 PDLHSPVSPI SESPSSPAYS TVTRVHAAPA APSATALPAS PVTRRSSEPQ BACU016269/1-856 PDLHSPVSPI SESPSSPAYS TVTRVHAAPA APSATVLPAS PVTRRSSEPQ ENSTTRP00000015604/1-856 PDLHSPVSPI SESPSSPAYS TVTRVHTAPA APSATALPAS PVTRRSSEPQ 451 500 ENSP00000317817/1-860 LCPGSAPKTH GESDKGPHTS PSHTLGKASP SPSLSSYSDP DSGHYCQLQP ENSBTAP00000020433/1-860 LCPGSVPKPH GESDKGPYSS PSHTLCKASP SPSLSSYSDP DSGHYCQLQP bmy_04066T0/1-564 LCPGSA---- GESDKGPYSS PSHTRCEASP SPSLSSYSDP DSGHYCQLQP BACU016269/1-856 LCPGSA---- GESDKGPYSS PSHTRCEASP SPSLSSYSDP DSGHYCQLQP ENSTTRP00000015604/1-856 LCPGSA---- GESDKGPYSS PPHTRCEASP SPSLSSYSDP DSGHYCQLQP 501 550 ENSP00000317817/1-860 PVRGSREWAA TETSSQQARS YGERLKELSE NGAPEGDWGK TFTVPIVEVT ENSBTAP00000020433/1-860 PVRGSREWAA AEASGRQARS YGEKLKELSE NGASEGDWGR TFTVPVVEAT bmy_04066T0/1-564 PVRGSREWAA AEASSRQARS YGERLKELSE NGAPEGDWGR TFTVPIVEAT BACU016269/1-856 PVRGSREWAA AEASSRQARS YGERLKELSE NGAPEGDWGR TFTVPIVEAT ENSTTRP00000015604/1-856 PVRGSREWAA AEASSHQARS YGERLKELSE NGAPEGDWGR TFTVPIVEAT 551 600 ENSP00000317817/1-860 SSFNPATFQS LLIPRDNRPL EVGLLRKVKE LLAEVDARTL ARHVTKVDCL ENSBTAP00000020433/1-860 SSFNPATFQS LLIPKDNRPL EVGLLRKVKE LLAEVDARTL ARHVTKVDCL bmy_04066T0/1-564 SSFNPATFQS PLIPKDNRPL EMGLLRKVKE LLAEVDARTL AQHVTKVDCL BACU016269/1-856 SSFNPATFQS PLIPKDNRPL EMGLLRKFKE LLAEVDARTL AQHVTKVDCL ENSTTRP00000015604/1-856 SSFNPATFQS LLIPKDNRPL EMGLLRKVKE LLAEVDARTL AQHVTKVDCL 601 650 ENSP00000317817/1-860 VARILGVTKE MQTLMGVRWG MELLTLPHGR QLRLDLLERF HTMSIMLAVD ENSBTAP00000020433/1-860 VARILGVTKE MQTLMGVRWG MELLTLPHGR QLRLDLLERF HTMSIMLAMD bmy_04066T0/1-564 VARILGVTKE MQTLMGVRWG MELLTLPHGR QLRLDLLERF HTMSIMLAVD BACU016269/1-856 VARILGVTKE MQTLMGVRWG MELLTLPHGR QLRLDLLERF HTMSIMLAVD ENSTTRP00000015604/1-856 VARILGVTKE MQTLMGVRWG MELLTLPHGR QLRLDLLERF HTMSIMLAVD 651 700 ENSP00000317817/1-860 ILGCTGSAEE RAALLHKTIQ LAAELRGTMG NMFSFAAVMG ALDMAQISRL ENSBTAP00000020433/1-860 ILGCTGSAEE RAALLHKTIQ LAAELRGTMG NMFSFAAVMG ALDMAQIARL bmy_04066T0/1-564 ILGCTGSAEE RAALLHKTIQ LAAELRGTMG NMFSFAAVMG ALDMAQV--- BACU016269/1-856 ILGCTGSAEE RAALLHKTIQ LAAELRGTMG NMFSFAAVMG ALDMAQIARL ENSTTRP00000015604/1-856 ILGCAGSAEE RAALLHKTIQ LAAELRGTMG NMFSFAAVMG ALDMAQIARL 701 750 ENSP00000317817/1-860 EQTWVTLRQR HTEGAILYEK KLKPFLKSLN EGKEGPPLSN TTFPHVLPLI ENSBTAP00000020433/1-860 EQTWVTLRQR HTEGAILYEK TLKPFLKSLN EGKEGPPLSN TTFPHILPLI bmy_04066T0/1-564 ---------- ---------- ---------- ---------- ---------- BACU016269/1-856 EQTWVTLRQR HTEGAILYEK KLKPFLKSLN EGKEGPPLSN TTFPHVLPLI ENSTTRP00000015604/1-856 EQTWVTLRQR HTEGAILYEK KLKPFLKSLN EGKEGPPLSN TTFPHVLPLI 751 800 ENSP00000317817/1-860 TLLECDSAPP EGPEPWGSTE HGVEVVLAHL EAARTVAHHG GLYHTNAEVK ENSBTAP00000020433/1-860 TLLECDSAPA EGPEPWGSTE HGVEVVLAHL EAARTVAHHG GLYHTNAEVK bmy_04066T0/1-564 ---------L SGP------- ---------- ---------- ----CRAGHK BACU016269/1-856 TLLECDSAPA EGPEPWGSTE HGVEVVLAHL EAARTVAHHG GLYHTNAEVK ENSTTRP00000015604/1-856 TLLECDSAPA EGPEPWGSTE HGVEVVLAHL EAARTVAHHG GLYHTNAEVK 801 850 ENSP00000317817/1-860 LQGFQARPEL LEVFSTEFQM RLLWGSQGAS SSQARRYEKF DKVLTALSHK ENSBTAP00000020433/1-860 LQGFQARPEL LEVFSTEFQM RLLWGSQGAS SSQARRYEKF DKVLTALSHK bmy_04066T0/1-564 LVSVRRSP-- ---------- -------GMC SFGIAVY--- ---------- BACU016269/1-856 LQGFQAQPEL LEVFSTEFQM RLLWGSQGAS SSQVRRYEKF DKVLTALSHK ENSTTRP00000015604/1-856 LQGFQARPEL LEVFSTEFQM RLLWGSQGAS SSQARRYEKF DKVLTALSHK 851 900 ENSP00000317817/1-860 LEPAVRSSEL ENSBTAP00000020433/1-860 LEPAIRSSEL bmy_04066T0/1-564 ---------- BACU016269/1-856 LEPAVRSSEL ENSTTRP00000015604/1-856 LEPAVRSSEL