KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:36 2014 Check: 00 .. Name: BACU002723/1-214 Len: 503 Check: 4650 Weight: 1.00 Name: ENSP00000358794/1-487 Len: 503 Check: 8846 Weight: 1.00 Name: ENSBTAP00000020444/1-500 Len: 503 Check: 829 Weight: 1.00 Name: bmy_11931T0/1-466 Len: 503 Check: 9112 Weight: 1.00 Name: ENSTTRP00000001237/1-449 Len: 503 Check: 9339 Weight: 1.00 // 1 50 BACU002723/1-214 ---------- ---------- ---------- ---------- ---------- ENSP00000358794/1-487 MLKREGKVQP YTKTLDGGWG WMIVIHFFLV NVFVMGMTKT FAIFFVVFQE ENSBTAP00000020444/1-500 MLKR--KVQP YKKTLDGGWG WMVIFHFFLV NVFVMGMTKT FAIFFVVFQE bmy_11931T0/1-466 ---------- ---------- ---------- ----MAMTKT FAIFFVVFQE ENSTTRP00000001237/1-449 MLKREGKVRP YTKTLDGGWG WMVVFHFFLV NVFVMGMTKT FAIFFVVFQE 51 100 BACU002723/1-214 ---------- ---------- ---------- -----MKNPS IVGV------ ENSP00000358794/1-487 EFEGTSEQIG WIGSIMSSLR FCAGPLVAII CDILGEKTTS ILGAFVVTGG ENSBTAP00000020444/1-500 EFEGTSEQTG WIGSIMSSLR FFAGPLVAVI CDITGEKTAS SLGAFLVAGG bmy_11931T0/1-466 EFEGTSEQTG WIGSIMSSLR FSAGPLVAVI CDIIGEKTAS ILGAFLVTGG ENSTTRP00000001237/1-449 EFEGTSEQTG WIGSIMSSLR FSAGPLVAVT CDIIGEKTAS ILGAFLVTGG 101 150 BACU002723/1-214 ---------- --LCTD---- ---------- ---------- ---------- ENSP00000358794/1-487 YLISSWATSI PFLCVTMGLL PGLGSAFLYQ VAAVVTTKYF KKRLALSTAI ENSBTAP00000020444/1-500 YLISSWATSI PFLCVTMGFL PGLGSAFLYQ VAAVVTTKYF KKRLALSTAI bmy_11931T0/1-466 YLISSWATSI PFLCVTMGFL PGLGSAFLYQ VAAVVTTKYF KKRLALSTAI ENSTTRP00000001237/1-449 YLISSWATSI PFLCVTMGFL PGLGSAFLYQ VAAVVTTKYF KKRLALSTAI 151 200 BACU002723/1-214 -SQGLNL--- ---------- ----GCTLIL FGAITLHLVP SSMLLRSIHI ENSP00000358794/1-487 ARSGMGLTFL LAPFTKFLID LYDWTGALIL FGAIALNLVP SSMLLRPIHI ENSBTAP00000020444/1-500 ARSGMGLTFL LAPFTKVLID LYDWTGALIL LGAIILHLVP SSMLLRPIHI bmy_11931T0/1-466 ARSGMGLTFL LAPFTKVLID LYDWTGALIL FGAITLHLVP SSMLLRPIHI ENSTTRP00000001237/1-449 ARSGMGLTFL LAPFTKVLID LYDWTGALIL FGAITLHLVP SSMLLRPTHI 201 250 BACU002723/1-214 KSESNSDIKD KSSSLSASGP EAACGTETSC CNEMQESAIR DNTMQ-DGQP ENSP00000358794/1-487 KSENNSGIKD KGSSLSAHGP EAHA-TETHC -HETEESTIK DSTTQKAGLP ENSBTAP00000020444/1-500 KSTSDSDIKD E-SSLSPTGP EAACGTETSC CNEIQESAIE DSIMQKERRP bmy_11931T0/1-466 KSESNSDIKD KSSSLSASGP EAACGTETSC CNEIQESAIR DNTMQ-DGQP ENSTTRP00000001237/1-449 KSESNSDIKD KSSSFSASGP EAACGTETSC RNEIQESAIR DNTMQ-DGQP 251 300 BACU002723/1-214 GISLTVSQNQ NEEFNNEPNR NRLFRKTHEE SYGEKAILWS CKQKLFDFSL ENSP00000358794/1-487 SKNLTVSQNQ SEEFYNGPNR NRLLLKSDEE S--DKVISWS CKQ-LFDISL ENSBTAP00000020444/1-500 GISLTVSQNQ SKEFNNEYNR NGLFRKTNEE TYWKKTTSRS CKQKLFDFSL bmy_11931T0/1-466 GISLTVSQNQ NEEFNNEPNR NRLFRKTDEE SYGKKAILWS CKQKLFDFSL ENSTTRP00000001237/1-449 GISLTVSQNQ NEEFNNEPNR NRLFQNTNEE SYGNKTILWS CKQKLFDFSL 301 350 BACU002723/1-214 LKNPFFYIFT WSFLLSQLAY FIPTFHLVAR AKTLGINIMD ASYLVSVAG- ENSP00000358794/1-487 FRNPFFYIFT WSFLLSQLAY FIPTFHLVAR AKTLGIDIMD ASYLVSVAGI ENSBTAP00000020444/1-500 FKNPFFYIFT WSFVLSQLAY FIPTFHLVAR AKTLGINIMD ASYLVSVAGI bmy_11931T0/1-466 LKNPFFYIFT WSFLLSQLAY FIPTFHLVAR AKTLGINIMD ASYLVSVAGI ENSTTRP00000001237/1-449 LKNPFFYIFT WSFLLSQLAY FIPTFHLVAR AKTLGINIMD ASYLVSVAGI 351 400 BACU002723/1-214 ---------- --------KK VYF------- ---------- ---------- ENSP00000358794/1-487 LETVSQIISG WVADQNWIKK YHYHKSYLIL CGITNLLAPL ATTFPLLMTY ENSBTAP00000020444/1-500 IETVSQIISG WVADQNWIKK YHYHKSYLIL CGITNLLAPL ATTFPLLMTY bmy_11931T0/1-466 IETVSQIISG WVADQNWIKK YHYHKSYLIL CGITNLLAPF ATTFPLLMTY ENSTTRP00000001237/1-449 TETVSQIISG WVADQNWIKK YHYHKSYLIL CGITNLLAPF ATTFPLLMTY 401 450 BACU002723/1-214 ---------- ---------- ----NFTLKR RNEL------ ---------- ENSP00000358794/1-487 TICFAIFAGG YLALILPVLV DLCRNSTVNR FLGLASFFAG MAVLSGPPIA ENSBTAP00000020444/1-500 TISFAVFSGG YLALILPVLV DLSGNSTVQS FLGLASFFAG MAVLSGPPLA bmy_11931T0/1-466 TIFFAIFSGG YLALILPVLV DLSGNSMVHR FLGLASFFAG MAVLSGPPLA ENSTTRP00000001237/1-449 TIFFAIFSGG YLALILPVLV DLSGNSMVHR FLGLASFFAG MAVLSGPPLA 451 500 BACU002723/1-214 ----NFTKIY ---------- ---------- ---------- ---------- ENSP00000358794/1-487 GWLYDYTQTY NGSFYFSGIC YLLSSVSFFF VPLAERWKNS LT-------- ENSBTAP00000020444/1-500 GWLYDYTQTY TGSYYFSGTC YLLSSVSLFF IPLAERWKNS LRTKREDCSQ bmy_11931T0/1-466 GCLYDYTQTY TGSFYFSGIC YLLSSVSLFF VPLAERWKNS LTRKREDCNQ ENSTTRP00000001237/1-449 ---------- ---------- ---------- ---------- ---------- 501 550 BACU002723/1-214 --- ENSP00000358794/1-487 --- ENSBTAP00000020444/1-500 VRA bmy_11931T0/1-466 M-- ENSTTRP00000001237/1-449 ---