KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:38 2014 Check: 00 .. Name: bmy_20636T0/1-960 Len: 1090 Check: 5903 Weight: 1.00 Name: ENSTTRP00000009927/1-1057 Len: 1090 Check: 2671 Weight: 1.00 Name: ENSBTAP00000020455/1-953 Len: 1090 Check: 5703 Weight: 1.00 Name: ENSP00000381097/1-984 Len: 1090 Check: 3875 Weight: 1.00 Name: BACU003177/1-984 Len: 1090 Check: 4380 Weight: 1.00 // 1 50 bmy_20636T0/1-960 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009927/1-1057 THTCTPTPTR ARTAPRAHNP AHAHAALRGV RSQLERERIR RSHRRGAQRH ENSBTAP00000020455/1-953 ---------- ---------- ---------- ---------- ---------- ENSP00000381097/1-984 ---------- ---------- ---------- ---------- ---------- BACU003177/1-984 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_20636T0/1-960 ---------M AAERAAPSGS RVAGMVCGLW VLVLVSSVLA LEEVLLDTTG ENSTTRP00000009927/1-1057 PETRCPPPAA ASARARPGDR WPAMALDCLL LLLLXXXXXX XXXTLMDTRT ENSBTAP00000020455/1-953 ---------- ---------- ---------- ---------- -----MDTRT ENSP00000381097/1-984 ---------- ---------- ---MALDYLL LLLLASAVAA MEETLMDTRT BACU003177/1-984 ---------- ---------- ---MALDCLL LLLLASAVAA MEETLMDTRT 101 150 bmy_20636T0/1-960 ETSEIGWLTY PPGGWDEVSV LDDQQRLTRT FEACHVAGAL PGPGQDNWLQ ENSTTRP00000009927/1-1057 ATAELGWTAN PASGWEEVSG YDENLNTIRT YQVCNVFE-- --PNQNNWLL ENSBTAP00000020455/1-953 ATAELGWTAN PASGWEEVSG YDENLNTIRT YQVCNVFE-- --PNQNNWLL ENSP00000381097/1-984 ATAELGWTAN PASGWEEVSG YDENLNTIRT YQVCNVFE-- --PNQNNWLL BACU003177/1-984 ATAELGWTAN PASGWEEVSG YDENLNTIRT YQVCNVFE-- --PNQNNWLL 151 200 bmy_20636T0/1-960 THFVERRGAQ RAHIRLHFSV RACSSLGVAG GTCRETFTLY YRQAEEPDSS ENSTTRP00000009927/1-1057 TTFINRRGAH RIYTEMRFTV RDCSSLPNVP GSCKETFNLY YYETDSVIAT ENSBTAP00000020455/1-953 TTFINRRGAH RIYTEMRFTV RDCSSLPNVP GSCKETFNLY YYETDSVIAT ENSP00000381097/1-984 TTFINRRGAH RIYTEMRFTV RDCSSLPNVP GSCKETFNLY YYETDSVIAT BACU003177/1-984 TTFINRRGAH RIYTEMRFTV RDCSSLPNVP GSCKETFNLY YYETDSVIAT 201 250 bmy_20636T0/1-960 NSTSSWHLKR WTKVDTIAAD ESFPASSAWA VGPRGAGQRA GLQLNVKERS ENSTTRP00000009927/1-1057 KKSAFWSEAP YLKVDTIAAD ESFSQVD--- -----FGGRL -MKVNTEVRS ENSBTAP00000020455/1-953 KKSAFWSEAP YLKVDTIAAD ESFSQVD--- -----FGGRL -MKVNTEVRS ENSP00000381097/1-984 KKSAFWSEAP YLKVDTIAAD ESFSQVD--- -----FGGRL -MKVNTEVRS BACU003177/1-984 KKSAFWSEAP YLKVDTIAAD ESFSQVD--- -----FGGRL -MKVNTEVRS 251 300 bmy_20636T0/1-960 FGPLTQRGFY VAFQDTGACL ALVAVKLFSY ACPSVLRAFA TFPETQASGA ENSTTRP00000009927/1-1057 FGPLTRNGFY LAFQDYGACM SLLSVRVFFK KCPSIVQNFA VFPET-MTGA ENSBTAP00000020455/1-953 FGPLTRNGFY LAFQDYGACM SLLSVRVFFK KCPSIVQNFA VFPET-MTGA ENSP00000381097/1-984 FGPLTRNGFY LAFQDYGACM SLLSVRVFFK KCPSIVQNFA VFPET-MTGA BACU003177/1-984 FGPLTRNGFY LAFQDYGACM SLLSVRVFFK KCPSIVQNFA VFPET-MTGA 301 350 bmy_20636T0/1-960 GGASLVAAVG TCVEHAEPEE DGGGGQAGGS PPRLHCNGEG KWMVAVGSCR ENSTTRP00000009927/1-1057 ESTSLVIARG ICIPNAEEVD ---------V PIKLYCNGDG EWMVPIGRCT ENSBTAP00000020455/1-953 ESTSLVIARG TCIPNAEEVD ---------V PIKLYCNGDG EWMVPIGRCT ENSP00000381097/1-984 ESTSLVIARG TCIPNAEEVD ---------V PIKLYCNGDG EWMVPIGRCT BACU003177/1-984 ESTSLVIARG TCIPNAEEVD ---------V PIKLYCNGDG EWMVPIGRCT 351 400 bmy_20636T0/1-960 CQPGHEPARG DKACQACPRG SYKASAGNAP CSPCPARSLS PDPAAPVCPC ENSTTRP00000009927/1-1057 CKPGYEPE-N SVACKACPAG MFKANQEAEG CSHCPSNSRS PSEASPICTC ENSBTAP00000020455/1-953 CKPGYEPE-N SVACKACPAG MFKASQEAEV CSHCPSNSRS PSEASPICTC ENSP00000381097/1-984 CKPGYEPE-N SVACKACPAG TFKASQEAEG CSHCPSNSRS PAEASPICTC BACU003177/1-984 CKPGYEPE-N SVACKACPAG MFKASQEAEG CSHCPSNSRS PSEASPICTC 401 450 bmy_20636T0/1-960 LEGFYRASSD PPEAPCTAPP SAPQELWFEV QGSVLMLHWR LPQELGGRGD ENSTTRP00000009927/1-1057 RTGYYRADFD PPEVACTSVP SGPRNVISIV NETSIILEWH PPRETGGRDD ENSBTAP00000020455/1-953 RTGYYRADFD PPEVACTSVP SGPRNVISIV NETSIILEWH PPRETGGRDD ENSP00000381097/1-984 RTGYYRADFD PPEVACTSVP SGPRNVISIV NETSIILEWH PPRETGGRDD BACU003177/1-984 RTGYYRADFD PPEVACTSVP SGPRNVISIV NETSIILEWH PPRETGGRDD 451 500 bmy_20636T0/1-960 LLFNVVCKEC GAGGKGPCRR CRDEVHFDPR QRGLTESRVL VGGLRAHVPY ENSTTRP00000009927/1-1057 VTYNIICKKC RA-DRRSCSR CDDNVEFVPR QLGLTECRVS ISSLWAHTPY ENSBTAP00000020455/1-953 VTYNIICKKC RA-DRRSCSR CDDNVEFVPR QLGLTECRVS ISSLWAHTPY ENSP00000381097/1-984 VTYNIICKKC RA-DRRSCSR CDDNVEFVPR QLGLTECRVS ISSLWAHTPY BACU003177/1-984 VTYNIICKKC RA-DRRSCSR CDDNVEFVPR QLGLTECRVS ISSLWAHTPY 501 550 bmy_20636T0/1-960 ILEVQAVNGV SELSPDPPQA AAVNVSTSHA VPSAVPAVHQ VSRASSSITV ENSTTRP00000009927/1-1057 TFDIQAVNGV SSKSPFPPQH VSVNITTNQA XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020455/1-953 TFDIQAVNGV SSKSPFPPQH VSVNITTNQA APSTVPIMHQ VSATMRSITL ENSP00000381097/1-984 TFDIQAINGV SSKSPFPPQH VSVNITTNQA APSTVPIMHQ VSATMRSITL BACU003177/1-984 TFDIQAVNGV SSKSPFPPQH VSVNITTNQA APSTVPIMHQ VSATMRSITL 551 600 bmy_20636T0/1-960 SWPQPDQANG DILDYQLRYY DQAEDESHSF TLTSETNTAT VTQLSPGHIY ENSTTRP00000009927/1-1057 XXXXXXXXXX XXXXXXXXXX XXEHNEFNSS MARSQTNTAR IDGLRPGMVY ENSBTAP00000020455/1-953 SWPQPEQPNG IILDYEIRYY EKEHNEFNSS MARSQTNTAR IDGLRPGMVY ENSP00000381097/1-984 SWPQPEQPNG IILDYEIRYY EKEHNEFNSS MARSQTNTAR IDGLRPGMVY BACU003177/1-984 SWPQPEQPNG IILDYEIRYY EKEHNEFNSS MARSQTNTAR IDGLRPGMVY 601 650 bmy_20636T0/1-960 GFQVRARTAA GHGPYGGKVY FQTLPQGELS AQLPERLSLV VGSILGALAF ENSTTRP00000009927/1-1057 VVQVRARTVA GYGKFSGKMC FQTLTDDDYK SELREQLPLI AGSAAAGVVF ENSBTAP00000020455/1-953 VVQVRARTVA GYGKFSGKMC FQTLTDDDYK SELREQLPLI AGSAAAGVVF ENSP00000381097/1-984 VVQVRARTVA GYGKFSGKMC FQTLTDDDYK SELREQLPLI AGSAAAGVVF BACU003177/1-984 VVQVRARTVA GYGKFSGKMC FQTLTDDDYK SELREQLPLI AGSAAAGVVF 651 700 bmy_20636T0/1-960 LLLAAITVLA LVFQRKR--- RGTGYVEQLQ QYS----SPG LGVKYYVDPS ENSTTRP00000009927/1-1057 VV--SLVAIS IVCSRKRAYS KEAVYSDKLQ HYSTGRGSPG MKI--YIDPF ENSBTAP00000020455/1-953 VV--SLVAIS IVCSRKRAYS KEAVYSDKLQ HYSTGRGSPG MKI--YIDPF ENSP00000381097/1-984 VV--SLVAIS IVCSRKRAYS KEAVYSDKLQ HYSTGRGSPG MKI--YIDPF BACU003177/1-984 VV--SLVAIS IVCSRKRAYS KEAVYSDKLQ HYSTGRGSPG MKI--YIDPF 701 750 bmy_20636T0/1-960 TYEDPCQAIR EFAREVDPTY MKIEEVIGAG SFGEVRRGRL QPRGRREQAV ENSTTRP00000009927/1-1057 TYEDPNEAVR EFAKEIDVSF VKIEEVIGAX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020455/1-953 TYEDPNEAVR EFAKEIDVSF VKIEEVIGAG EFGEVYKGRL KLPGKREIYV ENSP00000381097/1-984 TYEDPNEAVR EFAKEIDVSF VKIEEVIGAG EFGEVYKGRL KLPGKREIYV BACU003177/1-984 TYEDPNEAVR EFAKEIDVSF VKIEEVIGAG EFGEVYKGRL KLPGKREIYV 751 800 bmy_20636T0/1-960 AIQALWSGGA ESLQMAFLGQ AAVLGQFQHP NILRLEGVVT KSRPLMVVTE ENSTTRP00000009927/1-1057 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020455/1-953 AIKTLKAGYS EKQRRDFLSE ASIMGQFDHP NIIRLEGVVT KSRPVMIITE ENSP00000381097/1-984 AIKTLKAGYS EKQRRDFLSE ASIMGQFDHP NIIRLEGVVT KSRPVMIITE BACU003177/1-984 AIKTLKAGYS EKQRRDFLSE ASIMGQFDHP NIIRLEGVVT KSRPVMIITE 801 850 bmy_20636T0/1-960 LMELGPLDSF LRQREGQFSS LQLVAMQRGV AAAMHHLSSF AFVHRALSAH ENSTTRP00000009927/1-1057 XXXXXXXXXX XXQNDGQFTV IQLVGMLRGI AAGMKYLAEM NYVHRDLAAR ENSBTAP00000020455/1-953 FMENGALDSF LRAQE----- LKPSSMPYAL A---KKVGLL YYLHRSLASG ENSP00000381097/1-984 FMENGALDSF LRQNDGQFTV IQLVGMLRGI AAGMKYLAEM NYVHRDLAAR BACU003177/1-984 FMENGALDSF LRQNDGQFTV IQLVGMLRGI AAGMKYLAEM NYVHRDLAAR 851 900 bmy_20636T0/1-960 SVLVNSHLVC KVARLGHS-- ---------- ---------- ---------- ENSTTRP00000009927/1-1057 NILVNSNLVC KVSDFGLSRY LQDDTSDPTY TSSLGGKIPV RWTAPEAIAY ENSBTAP00000020455/1-953 Q-LVNSNLVC KVSDFGLSRY LQDDTSDPTY TSSLGGKIPV RWTAPEAIAY ENSP00000381097/1-984 NILVNSNLVC KVSDFGLSRY LQDDTSDPTY TSSLGGKIPV RWTAPEAIAY BACU003177/1-984 NILVNSNLVC KVSDFGLSRY LQDDTSDPTY TSSLGGKIPV RWTAPEAIAY 901 950 bmy_20636T0/1-960 ---------- ---------- ---------- --PQVLNAIE QEFRLPPPPG ENSTTRP00000009927/1-1057 RKFTSASDVW SYGIVMWEVM SFGERPYWDM SNQDVINAIE QDYRLPPPMD ENSBTAP00000020455/1-953 RKFTSASDVW SYGIVMWEVM SFGERPYWDM SNQDVINAIE QDYRLPPPMD ENSP00000381097/1-984 RKFTSASDVW SYGIVMWEVM SFGERPYWDM SNQDVINAIE QDYRLPPPMD BACU003177/1-984 RKFTSASDVW SYGIVMWEVM SFGERPYWDM SNQDVINAIE QDYRLPPPMD 951 1000 bmy_20636T0/1-960 CPPGLHLLML DTWQKDRTQR PHFDQLVAAF DKMIRKPDTL QGAEHSGGSP ENSTTRP00000009927/1-1057 CPAALHQLML DCWQKDRNSR PRFAEIVNTL DKMIRNPASL KTV----ATI ENSBTAP00000020455/1-953 CPAALHQLML DCWQKDRNSR PRFAEIVNTL DKMIRNPASL KTV----ATI ENSP00000381097/1-984 CPAALHQLML DCWQKDRNSR PRFAEIVNTL DKMIRNPASL KTV----ATI BACU003177/1-984 CPAALHQLML DCWQKDRNSR PRFAEIVNTL DKMIRNPASL KTV----ATI 1001 1050 bmy_20636T0/1-960 RDRPSQALLN PVALDFPSLD SPQAWLSAIG LECYQDSFSQ SGLHTFSDVA ENSTTRP00000009927/1-1057 TAVPSQPLLD RSIPDFTAFT TVDDWLSAIK MVQYRDSFLT AGFTSLQLVT ENSBTAP00000020455/1-953 TAVPSQPLLD RSIPDFTAFT TVDDWLSAIK MVQYRDSFLT AGFTSLQLVT ENSP00000381097/1-984 TAVPSQPLLD RSIPDFTAFT TVDDWLSAIK MVQYRDSFLT AGFTSLQLVT BACU003177/1-984 TAVPSQPLLD RSIPDFTAFT TVDDWLSAIK MVQYRDSFLT AGFTSLQLVT 1051 1100 bmy_20636T0/1-960 QLSLEDLPTL GITLAGHQKK LLHHIQLLKQ HLRPLGSVEV ENSTTRP00000009927/1-1057 QMTSEDLLRI GVTLAGHQKK ILNSILSMRV QMNQSPTAMA ENSBTAP00000020455/1-953 QMTSEDLLRI GVTLAGHQKK ILNSILSMRV QMSQSPTAMA ENSP00000381097/1-984 QMTSEDLLRI GITLAGHQKK ILNSIHSMRV QISQSPTAMA BACU003177/1-984 QMTSEDLLRI GVTLAGHQKK ILNSILSMRV QMSQSPTAMA