KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:11:47 2014 Check: 00 .. Name: ENSTTRP00000015387/1-695 Len: 710 Check: 1210 Weight: 1.00 Name: ENSP00000389466/1-710 Len: 710 Check: 5729 Weight: 1.00 Name: bmy_10937T0/1-619 Len: 710 Check: 7897 Weight: 1.00 Name: ENSBTAP00000020482/1-706 Len: 710 Check: 9607 Weight: 1.00 // 1 50 ENSTTRP00000015387/1-695 ----AALELR SVDLQNARNN QEPHTQEVGL QWLIMRHAES FTIQLHFNRR ENSP00000389466/1-710 MDQVATLRLE SVDLQSSRNN KEHHTQEMGV KRLTVRRGQP FYLRLSFSRP bmy_10937T0/1-619 ---------- ---------- -------MGL QRLIMHHGES FTIQLHFNRP ENSBTAP00000020482/1-706 ----AALELR SVDLQSAKNN QEHHTQEMGL QRLIVRRSQS FTIQLHFNRP 51 100 ENSTTRP00000015387/1-695 FHSGTDYIIF VAETGPQPTE LLGTRATFLL TQARQGNVWS ASDFTIHANS ENSP00000389466/1-710 FQSQNDHITF VAETGPKPSE LLGTRATFFL TRVQPGNVWS ASDFTIDSNS bmy_10937T0/1-619 FHSGTDYITL VAETGPEPTK LLGTRATFLL TQARQDNVWS ASDFTIHANS ENSBTAP00000020482/1-706 FHSKKDSITF VAETGPAPKE LLGTRATFLL TQDRQGKGWS ASDFTVHANS 101 150 ENSTTRP00000015387/1-695 LFVSLFTPAN AVIGPYTLKM EISQGPGHST THPLGTFILL FNP-SAXXXX ENSP00000389466/1-710 LQVSLFTPAN AVIGHYTLKI EISQGQGHSV TYPLGTFILL FNPWSPEDDV bmy_10937T0/1-619 LFVSLFTPAN AVI------- ---------- ---------- ------EDDV ENSBTAP00000020482/1-706 LDVSLFTPPS AVIGSYSLKM EISQGPSHST THPLGTFILL FNPWSAEDDV 151 200 ENSTTRP00000015387/1-695 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXFEED MIDICFQILN ENSP00000389466/1-710 YLPSEILLQE YIMRDYGFVY KGHERFITSW PWNYGQFEED IIDICFEILN bmy_10937T0/1-619 YLPSEILLQE YIMMDYGFVY NGHERVITPW PWNYGQFEED IIDIRFEILN ENSBTAP00000020482/1-706 YLPSETLLQE YIMMDYGFVY KGHERFITPW PWNYGQFEED IIDICFEILN 201 250 ENSTTRP00000015387/1-695 KSLYFLENPT KDYSQWNNVV YVCRVVSAMI NSNDDSRVLQ GSWREDYSQG ENSP00000389466/1-710 KSLYHLKNPA KDCSQRNDVV YVCRVVSAMI NSNDDNGVLQ GNWGEDYSKG bmy_10937T0/1-619 KSLYFLENPS KDYSQWNNVV YVCRVVSAMI NSNDDSGVLQ GSWREDYSQG ENSBTAP00000020482/1-706 KSLYFLKNPS KDYSQRNDVV YICRVVSAMI NSNDDSGVLQ GNWGEDYSRG 251 300 ENSTTRP00000015387/1-695 VSPLELTGSV AIL-QWAARG GQPVRYGQCW VFAAVMGTIM RCLGVPTRVV ENSP00000389466/1-710 VSPLEWKGSV AILQQWSARG GQPVKYGQCW VFASVMCTVM RCLGVPTRVV bmy_10937T0/1-619 VSPLEWTGSV AILRQWAARG GQPV------ ---------- RCLGVPTRVV ENSBTAP00000020482/1-706 VSPLEWTGSV AILRQWAARG GQPVKYGQCW VFAAVMCTVM RCLGVPTRVV 301 350 ENSTTRP00000015387/1-695 SNFHSAYNVD ANLTIDTYYD QQAEMLPTQK QDKMWNFHVW NKCWMIWKDL ENSP00000389466/1-710 SNFRSAHNVD RNLTIDTYYD RNAEMLSTQK RDKIWNFHVW NECWMIRKDL bmy_10937T0/1-619 SNFHSAHNVD ANLTIDTYYD QHAEMLPTQK RDKIWNFHVW NKCWMIQKDL ENSBTAP00000020482/1-706 SNFRSAHNSD ANLTIDTYYD QHAEMLPTQK RDKIWNFHVW NECWMIRKDL 351 400 ENSTTRP00000015387/1-695 PPGYNG-QVL DPTPQQTSTG LFHCGPASVK AIREGKVHLP YNTPFVYAEV ENSP00000389466/1-710 PPGYNGWQVL DPTPQQTSSG LFCCGPASVK AIREGDVHLA YDTPFVYAEV bmy_10937T0/1-619 PPGYNGWQVL DPTPQQTGSG SFHCGPASIK AIREGKVHLP YDTPFVYAEV ENSBTAP00000020482/1-706 PPGYNGWQVL DPTPQQTSSG LFRCGPASVK AIREGEVHLP YDTPFVYAEV 401 450 ENSTTRP00000015387/1-695 NADEVVWLLE DGQAQELLAH IISSIRKEIS TKMVGSDQSQ NITSSYKYPE ENSP00000389466/1-710 NADEVIWLLG DGQAQEILAH NTSSIGKEIS TKMVGSDQRQ SITSSYKYPE bmy_10937T0/1-619 NAGEVVWLLE DGQAQEILAH NISSIGKEIS TKMVGSDQSQ NITSSYKYPE ENSBTAP00000020482/1-706 NADEVVWLLK DGQAQEILAH NTSSIGKEIS TKMVGSDQRQ NITSSYKYPE 451 500 ENSTTRP00000015387/1-695 GSCEERSVFM KASWKMLGPW KASSPFLDLL GSGGFEDQPA QLQLYLTRKA ENSP00000389466/1-710 GSPEERAVFM KASRKMLGPQ RASLPFLDLL ESGGLRDQPA QLQLHLARIP bmy_10937T0/1-619 GAAEERSVFT KASQKMLGPW RASAPFLDLL GSGGFEDQPA QLQLYPTRKP ENSBTAP00000020482/1-706 GSPEERSVFM KASQKMLGVR RTSSPFLDLL GSGGAVGQPA QLQLHLTRKP 501 550 ENSTTRP00000015387/1-695 EWGQDLLPKL NAGSLADRAQ PQGPIRLVVH FCAQTLLHDG GTWEPLWRQI ENSP00000389466/1-710 EWGQDLQLLL RIQRVPDSTH PRGPIGLVVR FCAQALLHGG GTQKPFWRHT bmy_10937T0/1-619 EWGQDLLPKL HARSLADRAQ PQGPIRLVVH FCVQTLLHDG GTWEPLWRQI ENSBTAP00000020482/1-706 EWGQDVLLKL HARRVVDRAH PQGPIHLVVG FCAQTLLHNG GTRQPLWRQK 551 600 ENSTTRP00000015387/1-695 VRLTLDFGEE TQWLLLLPYN NYRNKLMDEK LICVSGIANV EETGRSML-- ENSP00000389466/1-710 VRMNLDFGKE TQWPLLLPYS NYRNKLTDEK LIRVSGIAEV EETGRSMLVL bmy_10937T0/1-619 VQLTLDLEEE TQWLLMLPYN NYRNKLMDEK LICVSGIAKV EETGRSML-- ENSBTAP00000020482/1-706 VHLTLDFGED IQWPLSLPYN NYRNKLTDEK LIRVSGIAKV EETGRFMLVL 601 650 ENSTTRP00000015387/1-695 -----GPPHL STEXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000389466/1-710 KDICLEPPHL SIEVSERAEV GKALRVHVTL TNTLMVALSS CTMVLEGSGL bmy_10937T0/1-619 ---------- ---VSERAEV GKALRFHISL TNTLSVALSH CTMVLEGSDL ENSBTAP00000020482/1-706 KDISLEPPHL SIEVSERAEV GKALRVHISL TNTLSVALSH CTMVLEGSGL 651 700 ENSTTRP00000015387/1-695 XXXXXXXXLG TLVARHTIQI QLDLYPIKAG PHQLQVLISS N-IKEIKGYK ENSP00000389466/1-710 INGQIAKDLG TLVAGHTLQI QLDLYPTKAG PRQLQVLISS NEVKEIKGYK bmy_10937T0/1-619 INGQITNDLG TLVAGHTIQI QLDLYPIKAG PHQLQVLISS NEIKEIKGYK ENSBTAP00000020482/1-706 INGQISNDLG TLVAGHTIEI EVDLYPIKAG PRQLQVLVSS NEIKEIKGYK 701 750 ENSTTRP00000015387/1-695 YIFLAAGRAS ENSP00000389466/1-710 DIFVTVAGAP bmy_10937T0/1-619 YIFVAAGRAS ENSBTAP00000020482/1-706 DIFVAAARAP