KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:47 2014 Check: 00 .. Name: ENSP00000328083/1-675 Len: 713 Check: 8223 Weight: 1.00 Name: ENSBTAP00000020493/1-674 Len: 713 Check: 3140 Weight: 1.00 Name: ENSTTRP00000007985/1-675 Len: 713 Check: 1377 Weight: 1.00 Name: bmy_11256T0/1-432 Len: 713 Check: 9035 Weight: 1.00 Name: BACU013120/1-675 Len: 713 Check: 5570 Weight: 1.00 // 1 50 ENSP00000328083/1-675 ---------- ------MAKH GADEPSSRSG SPDREGRASE DRSLLHQRLA ENSBTAP00000020493/1-674 ---------- ------MTNH GDDALSSRTG APDGDDRLSE DRSLLQQRLA ENSTTRP00000007985/1-675 ---------- ------MTDH GDDELSSRTG SPDEEGRVPE ERSLLHQSLA bmy_11256T0/1-432 MILEAVEIVQ AIEPTDMTDH GADELSSRTG SPDGEGRVPE ERSLLHQSLA BACU013120/1-675 ---------- ------MTDH GADELSSRTG SPDGEDRAPE ERSLLHQSLA 51 100 ENSP00000328083/1-675 VRELIDTEVS YLHMLQLCAS DIRSRLQQLP QGDLDVLFSN IDDIIKVNSR ENSBTAP00000020493/1-674 VRELIDTEVS YLHVLQLCAS DIRSRLQQLP QGDLDVLFSN IDDIIKVNSR ENSTTRP00000007985/1-675 VRELIDTEVS YLHVLQLCAL DIRSHLQQLP QGDLDVLFSN IDDIIKVNSK bmy_11256T0/1-432 IRELIDTEVS YLHVLQLCAS DIRSHLQQLP QGDLDVLFSN IDDIIKVNSK BACU013120/1-675 VRELIDTEVS YLHVLQLCAS DIRSHLQQLP QGDLDVLFSN IDDIIKVNSK 101 150 ENSP00000328083/1-675 FLHDLQETAS KEEEQVQLV- ---------- ---------- -GNIFLEFQE ENSBTAP00000020493/1-674 LLHDLQETAS REEEQVQLI- ---------- ---------- -GNAFLEFQE ENSTTRP00000007985/1-675 LLHDLQETAS REEEQVQLI- ---------- ---------- -GNLFLEFQE bmy_11256T0/1-432 LLHDLQETAX REEEQVQLIG EFAFLHPSVT EVPLPLAIYW YGNLFLEFQE BACU013120/1-675 LLHDLQETAA REEEQVQLI- ---------- ---------- -GSLFLEFQE 151 200 ENSP00000328083/1-675 ELEQVYKVYC ASYDQALLLV DTYRKEPELQ RHIQGIVEAV VPQAGSSGLS ENSBTAP00000020493/1-674 ELEQVYKVYC ASYEQALLLV ETYRKEPELQ REIQGIIEAV LPQAGPSGLS ENSTTRP00000007985/1-675 ELEQVYKVYC ASYEQALLLV EAYRMEPQLQ REIQDTIEAV LPQAGSSGLS bmy_11256T0/1-432 ELEQVYKVYC ASYEQALLLV ETYRKEPRLQ GEIQDTIEAV ---------- BACU013120/1-675 ELEQVYKVYC ASYEQALLLV ETYRKEPRLQ GEIQDTIEAV LPQAGPSGLS 201 250 ENSP00000328083/1-675 FLLVIPLQRI TRYPLLLQKI LENTVPDASA YPVLQRAVSA LQDVNTNINE ENSBTAP00000020493/1-674 FLLVIPLQRI TKYPLLLQKI LENTLPDASA YAVLQRATSA LQDVVTNINE ENSTTRP00000007985/1-675 FLLVIPLQRI TKYPLLLQKI LENTLPDASA YPVLQRATSA LQDVVTNINE bmy_11256T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU013120/1-675 FLLVIPLQRI TKYPLLLQKI LENTLPDASA YPVLQRATSA LQDVVTNINE 251 300 ENSP00000328083/1-675 YKMRKEVASK YTKVEQLTLR ERLARINTHT LSKKTTRLSQ LLKQEAGLIP ENSBTAP00000020493/1-674 YKRRKEVASK YTKVEPLSLR ERLARINTHT LSKKTTRLSQ LLKQEAGLVP ENSTTRP00000007985/1-675 YKRRKEVASK YTKVEHLSLR ERLARINMHT LSKKTTRLGQ LLKQEAGLVP bmy_11256T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU013120/1-675 YKRRKEVASK YTKVEQLSLW ERLARINTHT LSKKTTRLSQ LLKQEAGLIP 301 350 ENSP00000328083/1-675 RTEDKEFDDL EERFQWVSLC VTELKNNVAA YLDNLQAFLY FRPHEYNLDI ENSBTAP00000020493/1-674 RTEDKEFDDL EERFHWVSLC VTELKSNVAA YLDNLEAFLR FRPQDYNLEI ENSTTRP00000007985/1-675 KTEDKEFDDL EESFHWVSLC VTELKNNVAA YLDNLEAFLR FRPQEYDLDI bmy_11256T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU013120/1-675 KTEDKEFDDL EESFHWVSLC VTELKNNVAA YLGNLEAFLR FRPQEYDLDI 351 400 ENSP00000328083/1-675 PEGPAVQYCN LARDLHLEAF LKFKQRLEGL VWQPLCSLAK ALLGPQNLIK ENSBTAP00000020493/1-674 PEGPVVQYCY LARDLQLQAF PEFKQQLEAQ VWQPLCSLAK ALAGPQNLIK ENSTTRP00000007985/1-675 PGGPVVQYCY LARDLQLQTF PEFKQRLEAL VWQPLCSLAK ALAGPQNLIK bmy_11256T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU013120/1-675 PGGPVVQYCY LARDLQLQAF PEFKQRLEAL VWQPLCSLAK ALAGPQNLIK 401 450 ENSP00000328083/1-675 KRLDKLLDFE RVEEKLLEVG SVTYQEEAAR HTYQALNSLL VAELPQFNQL ENSBTAP00000020493/1-674 KRLDKLLDFE RVEEKLLEVG SVTYEEEAAR HTYQALNSLL VAELPQFNQL ENSTTRP00000007985/1-675 KRLDKLLDFE RVEEKLLEVG SMTYEEEAAR HMYEALNSLL VAELPQFKQL bmy_11256T0/1-432 ---------- ---------- ---------- -----LRALM TVSVP----- BACU013120/1-675 KRLDKLLDFE RVQEKLLEVG SMTYEEEAAR HMYEALNSLL VAELPQFKQL 451 500 ENSP00000328083/1-675 VMQWLGQIMC TFVTLQRDLA KQVLQRAEGS MAQLPHHHVP EPAFRKLVED ENSBTAP00000020493/1-674 AMRWLGQILC TFVTLQRDLA KQVLQRAEDS LAQLPHHHLS EPAFRKLVED ENSTTRP00000007985/1-675 AVRWLGQILC TFVTLQRDLA KQVLQRAEGS LAQLPHHHLS DPAFRKLVED bmy_11256T0/1-432 ---------- ---------- ---------- -TQLPHHHIS DPAFRKLVED BACU013120/1-675 AVRWLGQILC TFVTLQTDLA KQVLQRAEGS LAQLPHHHVS DPAFRKLVED 501 550 ENSP00000328083/1-675 ALGRTSNQLR SFQETFEKVQ PPPTTQPLLP GSERQVQALL SRYGPGKLYQ ENSBTAP00000020493/1-674 ALGQTSHQLR SFQENFEKVL PPPTTQPLLP GAERQVQALL SRYGPGKLYQ ENSTTRP00000007985/1-675 ALGQTSHQLH SFQENFEKVL PPPTTQPLLP GAEHQVQALL SRYGPGKLYQ bmy_11256T0/1-432 ALGQTGHQLH SFQQNFEKVL PSPTTQPLLP GAERQVQALL SRYGPGKLYQ BACU013120/1-675 ALGQTGHQLH SFQQNFEKVL PPPTTQPLLP GAERQVQALL SRYGPGKLYQ 551 600 ENSP00000328083/1-675 VTSNISGTGT LDLTLPRGQI VAILQNKDTK GNSGRWLVDT GGHRGYVPAG ENSBTAP00000020493/1-674 VTSNISGAGT LDLTLPRGHI VALLQNKDTK GNSSRWLVDT GGHRGYVPAG ENSTTRP00000007985/1-675 VTSNISGSGT LDLTLPRGHV VALLQDKDTK GNSSRWLVDT GGHRGYVPAG bmy_11256T0/1-432 VTSNISGAGT LDLTLPRGHI VALLQDKDTK GNSSRWLVDT GGHRGYVPAG BACU013120/1-675 VTSNISGSGT LDLTLPRGHI VALLQDKDTK GNSSRWLVDT GGHRGYVPAG 601 650 ENSP00000328083/1-675 KLQLYHVVPS AEELRRQAGL NKDPRCLTPE PSPALVPSIP TMNQVIAAYP ENSBTAP00000020493/1-674 KLEVYHVVPS -EELRGQERP HRDSQHQTPE PISAPVPSVP AVTQVVAMYP ENSTTRP00000007985/1-675 KLELYHVVPR EEELRGQARX XXXXXXXXXX XXXXXXXXXX XXXXVVAVYP bmy_11256T0/1-432 KLELYHVVPR EEELRGQAKP HRDSQRQTPE PTLAPVPSVP AVTQVVAVYP BACU013120/1-675 KLELYHVVPR EEELRGQAQP HSDSQRQTPE PTLALVPSVP AVTQVVAVYP 651 700 ENSP00000328083/1-675 FVARSSHEVS LQAGQPVTIL EAQDKKGNPE WSLVEVNGQR GYVPSGFLAR ENSBTAP00000020493/1-674 FMARSSHEVS LQAGQRVTVL EAQDKKGNPE WSLVEVNGQR GYVPSSFLAR ENSTTRP00000007985/1-675 FVARSSHEVS LQAGQQVTVL EAQDKKGNPE WSLVEVNGQR GYVPSSFLAR bmy_11256T0/1-432 FVARSSHEVS LQAGQQVTVL EAQDKKGXPE WSLVEVNGQR GYVPSSFLAR BACU013120/1-675 FVARSSHEVS LQAGQQVTVL EAQDKKGNPE WSLVEVNGQR GYVPSSFLAR 701 750 ENSP00000328083/1-675 ARSPVLWGWS LPS ENSBTAP00000020493/1-674 APSPAPWGWS LPS ENSTTRP00000007985/1-675 APGPALWGWS LPS bmy_11256T0/1-432 APGPALWGWX LPS BACU013120/1-675 APGPALWGWS LPS