KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:11:48 2014 Check: 00 .. Name: bmy_21959T0/1-820 Len: 1035 Check: 5476 Weight: 1.00 Name: ENSTTRP00000001684/1-825 Len: 1035 Check: 6326 Weight: 1.00 Name: ENSP00000289272/1-950 Len: 1035 Check: 1586 Weight: 1.00 Name: ENSBTAP00000020497/1-950 Len: 1035 Check: 1816 Weight: 1.00 // 1 50 bmy_21959T0/1-820 MVFSWRGGFE ARRLLLSLLL LAAWETGSGQ VHYSVSEEAK HGTFVGRIAQ ENSTTRP00000001684/1-825 MVSSKSRGGE VGCLLLSLLL LAAGEARSSQ VHYSVPEEAK HGTFVGRIAQ ENSP00000289272/1-950 MLSSWQGGPR PRQLLLWLLI LAAWETGSGQ LHYSVPEEAK HGTFVGRIAQ ENSBTAP00000020497/1-950 MLISWREGPG ARLLLLSLLL LAAWESGRGQ VHYSVPEEAK HGTFVGRIAQ 51 100 bmy_21959T0/1-820 DLGLELAELV PRLFRVASKG RGDLLEVNLQ NGILFVNSRI DREELCGRSA ENSTTRP00000001684/1-825 DLGLELAELV PRLFRLASKG RGDLLEVNLQ NGILFVNSRI DREELCGRSV ENSP00000289272/1-950 DLGLELAELV PRLFRVASKR HGDLLEVNLQ NGILFVNSRI DREELCGRSA ENSBTAP00000020497/1-950 DLGLELAELV PRLFRVASKG RGDLLEVNLK NGILFVNSRI DREELCGRSA 101 150 bmy_21959T0/1-820 ECSIHLEVIV DRPLQVFHVE VEVKDINDNP PVFR-GEQKV LISESAPLDS ENSTTRP00000001684/1-825 ECSIHLEVIV DRPLQVFHVE VEIKDINDNP PVFPVTVKTI RFHESRLLDS ENSP00000289272/1-950 ECSIHLEVIV DRPLQVFHVE VKVRDINDNP PIFPESKKRI IIAESRPPET ENSBTAP00000020497/1-950 ECSIHLEVIV DRPLQVFHVE VEVTDINDNP PVFPESEKRI IIAESRPPET 151 200 bmy_21959T0/1-820 RFPLEGASDA DIGLNSLVTY RLSLNEYFTL KVITKTDKSI LPELILRKSL ENSTTRP00000001684/1-825 RFPLEGAFDA DVGVNALLSY KLSSSEFFFL DIQTNDELSQ SLSLVLRKSL ENSP00000289272/1-950 RFPLDGASDA DIGVNSALTY RLDPNDYFTL DAQNSLEQMS SLSLVLRKTL ENSBTAP00000020497/1-950 RFPLDGASDA DIGVNSALTY RVDPNDYFTL DTQNSREQMS SLSLVLRKSL 201 250 bmy_21959T0/1-820 DREEMPELNI LLTALDGGKP ELTGSVQIQI TILDVNDNAP EFDTPGYKVV ENSTTRP00000001684/1-825 DREETAEINL LLVATDRGKP ELTGTVQLLI KVLDVNDNEP TFDQSVYKVQ ENSP00000289272/1-950 DREEIQEHSL LLTASDGGKP ELTGTVQLLI TILDVNDNAP EFYQSVYKVT ENSBTAP00000020497/1-950 DREEIQEHSL LLTASDGGKP ELTSTVQLLI TILDVNDNAP EFDQLIYKVR 251 300 bmy_21959T0/1-820 LFENIPNNTR VIQLNASDLD EGSNREISYG IRMILPVSEK CMFSINAETG ENSTTRP00000001684/1-825 LLENIAKGSL VIKLNSSDAD EGSNSEIVYS FSSDVSPNIK TKFKIDPSSG ENSP00000289272/1-950 VLENAFNGTL VIKLNATDPD DGTNGDIVYS FRRPVWPAVV YAFTINPNNG ENSBTAP00000020497/1-950 MLENSLNGSL VIKLNATDPD DGTNADITYS FRRPVSPAIL YAFYINPDSG 301 350 bmy_21959T0/1-820 EIRIYGKLDF EENNEYEIQV NAIDKGXPSM AGHCTVLVEV LDLNDNTPEV ENSTTRP00000001684/1-825 EIRTKGQLDY EEVKSYEIQV IAYDNGTPPM SGHCKISVKL VDINDNTPEV ENSP00000289272/1-950 EIRTKGKLDF EEKKLYEISV EAVDKGNIPM AGHCTLLVEV LDVNDNAPEV ENSBTAP00000020497/1-950 EIRTKGKLDF EENKLYEISV EAIDKGNIPM AGHCTILVEI VDTNDNAPEV 351 400 bmy_21959T0/1-820 MITSLSLPVR EDAQVGTVIA LISVFDHDSG ANGQVTCSLT PQVPFKLVST ENSTTRP00000001684/1-825 SITSLSLPIR EDAPLGTVIA LITVSDRDSG ANGQVTCTLT PHDFFKLVST ENSP00000289272/1-950 TITSLSLPIR EDTQPSAIIA LISVSDRDSG SNGQVTCTLT PHVPFKLVST ENSBTAP00000020497/1-950 TITSLALPVR EDAQVGTVIA LVSVSDRDSG ANGQVTCSLM AHNPFKLVST 401 450 bmy_21959T0/1-820 FKNYYSLVLD SALDLWEAGS GQVHYSVPEE AKHGTFVGRI TQDLGLELAE ENSTTRP00000001684/1-825 FKNYYSLVLD SALD----RE NLANYEVVVK ARDAG----- ---------- ENSP00000289272/1-950 YKNYYSLVLD SALD----RE SVSAYELVVT ARDGG----- ---------- ENSBTAP00000020497/1-950 FKNYYSIVLD SVLD----RE SASNYEVVVT ARDGG----- ---------- 451 500 bmy_21959T0/1-820 LVPRLFRVAS KGRGDLLEVN LQNGILFVNS RIDREELCGR SAECSIHLEV ENSTTRP00000001684/1-825 -SPSLSATAS ---------- ---------- ---------- ---------- ENSP00000289272/1-950 -SPSLWATAS ---------- ---------- ---------- ---------- ENSBTAP00000020497/1-950 -SPSLSATAS ---------- ---------- ---------- ---------- 501 550 bmy_21959T0/1-820 IVDRPLQVFH VEVEVTDIND NPPVFPESEK RIXIAESRPP ETRFPLDGAS ENSTTRP00000001684/1-825 ---------- VSVEVADVND NAPAFAQPEY TVLVKENNPP GCHIFTVSAR ENSP00000289272/1-950 ---------- VSVGVADVND NAPAFAQPEY TVFVKENNPP GCHIFTVSAQ ENSBTAP00000020497/1-950 ---------- VSVEVADVND NAPAFPQPEY TVFVKENNPP GCHIFTVSAR 551 600 bmy_21959T0/1-820 DADIGVNSAL TYRVYP---- ----NDYFTL DTQNNREQTS SLSLVLRKSL ENSTTRP00000001684/1-825 DADAQENALV SYSLVERRVG ERALSSYVSV HAESGK---- ---VYALQPL ENSP00000289272/1-950 DADAQENALV SYSLVERRVG ERALSSYVSV HAESGK---- ---VYALQPL ENSBTAP00000020497/1-950 DADAQENALV SYSLVERRVG ERALSSYVSV HAESGK---- ---VYALQPL 601 650 bmy_21959T0/1-820 DREEIQEHSL LLTASDGGKP ELTGTVQLLI TILDVNDNAP EF-------- ENSTTRP00000001684/1-825 DHEELELLQF QVSARDAGVP PLGSNVTLQV FVLDENDNAP ALLLPGPGGG ENSP00000289272/1-950 DHEELELLQF QVSARDSGVP PLGSNVTLQV FVLDENDNAP ALLTPGAGSA ENSBTAP00000020497/1-950 DHEELELLQF QVSARDAGVP PLGSNVTLQV FVLDENDNAP ALLPPGPSGG 651 700 bmy_21959T0/1-820 DHLIYKVRML ENAFNGTLVI KLNATDPDDG TNADIIYSFR RPVSPAVLYA ENSTTRP00000001684/1-825 AGALSQL-VA RSVGAGHVVA KVRAVDADSG YNAWLLYEL- QPVAGGARSP ENSP00000289272/1-950 GGTVSEL-MP RSVGAGHVVA KVRAVDADSG YNAWLSYEL- QLAAVGARIP ENSBTAP00000020497/1-950 PSAVSQV-VS RSVDAGHVVA KVRAVDADSG YNAWLSYEL- QPAAGGSRSP 701 750 bmy_21959T0/1-820 FSINPGSGEI RTKGKLDFEE XKLYEISVEA IDKGNIPMAG HCTILVEIVD ENSTTRP00000001684/1-825 FRVGLYTGEI STTRALDEAD APRHRLLVLV KDHGEPALTA TATVLLSLED ENSP00000289272/1-950 FRVGLYTGEI STTRPLDEVD APHHRLLVLV KDHGEPALTA TATVLLSLVE ENSBTAP00000020497/1-950 FRVGLYTGEI STTRALDEAD APRQRLLVLV KDHGEPALTA TATVLLSLED 751 800 bmy_21959T0/1-820 INDNAPEVTV TSLALPVRE- ----DAQVGT VIALISVS-- ---------- ENSTTRP00000001684/1-825 -SGQAPKASS RASTGAAGAE AALVDVNVYL IIAICAVSSL LVLTLLLYTA ENSP00000289272/1-950 -SGQAPQASS RASAGAVGPE AALVDVNVYL IIAICAVSSL LVLTLLLYTA ENSBTAP00000020497/1-950 -SGQAPKASS RALSGAAGAE TALVDVNVYL IIAICAVSSL LVLTLLLYTA 801 850 bmy_21959T0/1-820 ---------- ---------- ---------- -----DRDSG ANGQVTCSLM ENSTTRP00000001684/1-825 LRCSAPSSEG ACGPGKPTLV CSSAVGSWSY SQQRRQRVCS GEGPPNADLM ENSP00000289272/1-950 LRCSAPPTEG ACAPGKPTLV CSSAAGSWSY SQQRRPRVCS GEGPHKTDLM ENSBTAP00000020497/1-950 LRCSAPPSEG ACGPVKPRLV CSSAVGNWSY SQERRQRVCS GEGPPKTDLM 851 900 bmy_21959T0/1-820 PHSP------ ---------- ---------- ---------- ---------- ENSTTRP00000001684/1-825 AFSPSLP--- ---QGPDSAE ERQQ------ ---------- ---------- ENSP00000289272/1-950 AFSPSLPPCL GSAEGTGQRE EDSECLKEPR QPNPDWRYSA SLRAGMHSSV ENSBTAP00000020497/1-950 AFSPSLPPCL SSAEGPGEIE AELEQLKKPR QPNPDWRYSA SLRAGMHSSV 901 950 bmy_21959T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001684/1-825 ---------- ---------- -----LSESE VRKVSLLI-- ---------- ENSP00000289272/1-950 HLEEAGILRA GPGGPDQQWP TVSSATPEPE AGEVSPPVGA GVNSNSWTFK ENSBTAP00000020497/1-950 HLEEAGILRA GPGGPDQQWP TVSSATPEPE AGEVSPPVGA GVNSNSWTFK 951 1000 bmy_21959T0/1-820 ---------- -------FKL VSTFKNYYSL VL-------D SALDRESVAN ENSTTRP00000001684/1-825 ---------- -------FFS VGS-----EI VL-------- -------FSL ENSP00000289272/1-950 YGPGNPKQSG PGELPDKFII PGS-----PA IISIRQEPTN SQIDKSDFIT ENSBTAP00000020497/1-950 YGPGNPKQSG PGELPDKFII PGS-----PA IISIRQEPTN SQIDKSDFIT 1001 1050 bmy_21959T0/1-820 Y--------- ---------- -------ETH HCFPV ENSTTRP00000001684/1-825 FSM------- ---------- -------IST DYFDS ENSP00000289272/1-950 FGKKEETKKK KKKKKGNKTQ EKKEKGNSTT DNSDQ ENSBTAP00000020497/1-950 FGKKEETKKK KKKKKGNKTQ EKKEKGNSTT DNSDQ