KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:50 2014 Check: 00 .. Name: ENSBTAP00000020526/1-643 Len: 680 Check: 5967 Weight: 1.00 Name: ENSP00000300456/1-643 Len: 680 Check: 6730 Weight: 1.00 Name: ENSTTRP00000015631/1-642 Len: 680 Check: 3384 Weight: 1.00 Name: bmy_04089T0/1-375 Len: 680 Check: 8674 Weight: 1.00 Name: BACU016250/1-643 Len: 680 Check: 3323 Weight: 1.00 // 1 50 ENSBTAP00000020526/1-643 MLLGASLLGV LLFSWLVLKL PWTQVGLSLF FLYLGSGGWR FIRIFIKTVR ENSP00000300456/1-643 MLLGASLVGV LLFSKLVLKL PWTQVGFSLL FLYLGSGGWR FIRVFIKTIR ENSTTRP00000015631/1-642 MLLGASLVGL LLFSKLVLKL PWTQVGFSLL FLYLGSGGWR FVRVFVKTVR bmy_04089T0/1-375 ---------- ---------- ---------- ---------- ---------- BACU016250/1-643 MLLGASLVGL LLFSKLVLKL PWTQVGFSLL FLYLGSGGWR FVRVFVKTIR 51 100 ENSBTAP00000020526/1-643 RDIFGGTVLL RVKAKVRRYL RERRTVPILF AATVQRHPDK TALIFEGTDT ENSP00000300456/1-643 RDIFGGLVLL KVKAKVRQCL QERRTVPILF ASTVRRHPDK TALIFEGTDT ENSTTRP00000015631/1-642 RDVFGGLVLL KVKAKVRRYL RERRTVPILF ASTVQRHPNK TALIFEGTDT bmy_04089T0/1-375 ---------- ---------- ---------- ---------- ---------- BACU016250/1-643 RDVFGGIVLL KVKAKVQQYL RERRTVPILF ASTVQRHPNK TALIFEGTDT 101 150 ENSBTAP00000020526/1-643 HWTFRQLDNY SNSVANFLQA QGLASGDVVA LFMENRNEFV GLWLGMAKLG ENSP00000300456/1-643 HWTFRQLDEY SSSVANFLQA RGLASGDVAA IFMENRNEFV GLWLGMAKLG ENSTTRP00000015631/1-642 HWTFCQLDDY SSGVTNFL-A RGLASGDVAP LFMENCNEFV GLXXXXXXXX bmy_04089T0/1-375 ---------- ---------- ---------- ---------- ---------- BACU016250/1-643 HWTFCQLDDY SSGVANFLQA RGLASGDVVA LFMENRNEFV GLWLGMAKLG 151 200 ENSBTAP00000020526/1-643 VEAALINTNL RRDALLHCLT SSQARALVFG SEMAPAVLEI HANLDPSLNF ENSP00000300456/1-643 VEAALINTNL RRDALLHCLT TSRARALVFG SEMASAICEV HASLDPSLSL ENSTTRP00000015631/1-642 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVLEI CASLDPSISL bmy_04089T0/1-375 ---------- ---------- ---------- ---------- ---------- BACU016250/1-643 VEAALINTNL RRDALRHCLT SSQARALIFG SEMAPAVLEI CANLDPSVSL 201 250 ENSBTAP00000020526/1-643 FCSGPWEPST VPAGTKHLDP LLEDAPKHQP SRPNKGFVDK LFYIYTSGTT ENSP00000300456/1-643 FCSGSWEPGA VPPSTEHLDP LLKDAPKHLP SCPDKGFTDK LFYIYTSGTT ENSTTRP00000015631/1-642 FCTGPWEASA VPAGTEHLDP LLEDAPKHLP SRPNKGFVDK LFYIYTSGTT bmy_04089T0/1-375 ---------- ---------- ---------- ---------- ---------- BACU016250/1-643 FCTGAWEASA VPAGTEHLDP LLEDAPKHLP SRPNKGFVDK LFYIYTSGTT 251 300 ENSBTAP00000020526/1-643 GLPKAAIVVH SRYYRMAALV YYGFRMRPDD IVYDCLPLYH SAGNIVGIGQ ENSP00000300456/1-643 GLPKAAIVVH SRYYRMAALV YYGFRMRPND IVYDCLPLYH SAGNIVGIGQ ENSTTRP00000015631/1-642 GLPKAAIVVH SRYYRMAALV YYGFRMRPDD IVYDCLPLYH SAGNIVGIGQ bmy_04089T0/1-375 ---------- ---------- ---------- ---------- ---------- BACU016250/1-643 GLPKAAIVVH SRYYRMAALV YYGFRMRPDD IIYDCLPLYH SAGNIVGIGQ 301 350 ENSBTAP00000020526/1-643 CLIHGMTVVI RKKFSASRFW DDCIKYNCTI VQYIGELCRY LLNQPPREAE ENSP00000300456/1-643 CLLHGMTVVI RKKFSASRFW DDCIKYNCTI VQYIGELCRY LLNQPPREAE ENSTTRP00000015631/1-642 CLLHGMTVVI RKKFSASRFW DDCIKYNCTI VQYIGELCRY LLNQPPREAE bmy_04089T0/1-375 -----MTVVI RKKFSASRFW DDCIKYNCTI VQYIGELCRY LLNQPSREAE BACU016250/1-643 CLLHGMTVVI RKKFSASRFW DDCIKYNCTI VQYIGELCRY LLNQPPREAE 351 400 ENSBTAP00000020526/1-643 GQHRVRMALG NGLRQCIWTD FCSRFHIPQV AEFYGATECN CSLGNFDGQV ENSP00000300456/1-643 NQHQVRMALG NGLRQSIWTN FSSRFHIPQV AEFYGATECN CSLGNFDSQV ENSTTRP00000015631/1-642 NRHRVRMALG NGLRQSIWTN FCSRFHISQV AEFYGATECN CSLGNFDGQV bmy_04089T0/1-375 NRHRVRMALG NGLRQSIWTN FCSRFHIPQV AEFYGATECN CSLGNFDGQV BACU016250/1-643 TRHRVRMALG NGLRQSIWTN FCSRFHIPQV AEFYGATECN CSLGNFDGQV 401 450 ENSBTAP00000020526/1-643 GACGFNSRIL SFVYPIRLVR VNEDTMELIR GPDGLCIPCK PGEPGQLVGV ENSP00000300456/1-643 GACGFNSRIL SFVYPIRLVR VNEDTMELIR GPDGVCIPCQ PGEPGQLVGR ENSTTRP00000015631/1-642 GACGFNSRIL SFVYPIRLVR VNEDTMELIR GPDGVCLPCQ PGEPGQLVGA bmy_04089T0/1-375 GACGFNSRIL SFVYPIRLVR VNEDTMELIR GPDGICLPCQ PGEPGQLVGT BACU016250/1-643 GACGFNSRIL SFVYPIRLVR VNEDTMELIR GPDGICLPCQ PGEPGQLVGA 451 500 ENSBTAP00000020526/1-643 IIQEDPLRRF DGYLNQGTND KKIAGDVFKK GDQAYLS--- ---------- ENSP00000300456/1-643 IIQKDPLRRF DGYLNQGANN KKIAKDVFKK GDQAYLT--- ---------- ENSTTRP00000015631/1-642 IVQQDPLRRF DGYLNQGANN KKIAKDVFKK GDQAYLT--- ---------- bmy_04089T0/1-375 IMQQDPLRRF DGYLNQGANN KKIAKDVFKK GDQAYLTGLC RPLGREERTE BACU016250/1-643 IMQQDPLRRF DGYLNRGANN KKIAKDVFKK GDQAYLT--- ---------- 501 550 ENSBTAP00000020526/1-643 ---------- ---------- ----GDVLVM DELGYVYFRD RTGDTFRWKG ENSP00000300456/1-643 ---------- ---------- ----GDVLVM DELGYLYFRD RTGDTFRWKG ENSTTRP00000015631/1-642 ---------- ---------- ----GDVLVM DELGYLYFRD RTGDTFRWKG bmy_04089T0/1-375 GAFRHPPRAP PRDSPGPTSP SPSLGDVLVM DELGYLYFRD RTGDTFRWKG BACU016250/1-643 ---------- ---------- ----GDVLVM DELGYLYFRD RTGDTFRWKG 551 600 ENSBTAP00000020526/1-643 ENVSTTEVEG TLSRLLDMAD VAVYGVEVPG TEGRAGMAAV ASSSGSCDLE ENSP00000300456/1-643 ENVSTTEVEG TLSRLLDMAD VAVYGVEVPG TEGRAGMAAV ASPTGNCDLE ENSTTRP00000015631/1-642 ENVSTTEVEG ALSRLLAMAD VAVYGVEVPG TEGRAGMAAV ANPSGSCDLE bmy_04089T0/1-375 ENVSTTEVEG TLSRLLAMAD VAVYGVEVPG NEGRAGMAAV ASPSGSCDLE BACU016250/1-643 ENVSTTEVEG TLSRLLAMAD VAVYGVEVPG NEGRAGMAAV ASPSGSCDLE 601 650 ENSBTAP00000020526/1-643 HLAQLLQKEL PLYARPIFLR FLPELHKTGT FKLQKTELQK EGFDPTVVKD ENSP00000300456/1-643 RFAQVLEKEL PLYARPIFLR LLPELHKTGT YKFQKTELRK EGFDPAIVKD ENSTTRP00000015631/1-642 RLAQLLEKEL PLYARPIFLR FLPELHKTGT FKLQKTDLRK EGFDLTVVKD bmy_04089T0/1-375 RLAQLLEKEL PLYARPIFLR FLPELHKTGT FKLQKTDLRK EGFDPTVVKD BACU016250/1-643 RLAQLLEKEL PLYARPIFLR FLPELHKTGT FKLQKTDLRK EGFDPTVLKD 651 700 ENSBTAP00000020526/1-643 QLFYLDARKG RYVPLDQEAY TRIQAGQEKL ENSP00000300456/1-643 PLFYLDAQKG RYVPLDQEAY SRIQAGEEKL ENSTTRP00000015631/1-642 PLFYLDVRKG RYVPLDREAY TRIQAGEEKL bmy_04089T0/1-375 PLFYLDARKG RYVPLDREAY TRIQAGEEKL BACU016250/1-643 PLFYLDARKG RYVPLDREAY TRIQAGEEKL