KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:54 2014 Check: 00 .. Name: ENSTTRP00000004280/1-822 Len: 864 Check: 830 Weight: 1.00 Name: bmy_16849T0/1-848 Len: 864 Check: 3205 Weight: 1.00 Name: ENSP00000393312/1-853 Len: 864 Check: 3519 Weight: 1.00 Name: BACU007426/1-731 Len: 864 Check: 4265 Weight: 1.00 Name: ENSBTAP00000020550/1-820 Len: 864 Check: 8934 Weight: 1.00 // 1 50 ENSTTRP00000004280/1-822 ---------- ---------- ---------- ---MWSWKCL LFW--AVLVT bmy_16849T0/1-848 ---------- -MGAAGFVAR GLVQQFRGKG LHSPWDAAAQ CGWHNALCLS ENSP00000393312/1-853 MEARVSLKRR IELTVEYPWR CGALSPTSNC RTGMWSWKCL LFW--AVLVT BACU007426/1-731 ---------- ---------- ---------- ---MWSWKCL LFW--AVLVT ENSBTAP00000020550/1-820 ---------- ---------- ---------- ---MWSRKCL LFW--AVLVT 51 100 ENSTTRP00000004280/1-822 AALCTAR--- PAPTLPEQAQ PWGAPVEVES LLVHPGDLLQ LRCRLRDDVQ bmy_16849T0/1-848 PLLPAPRFLF PAP-VAAAAQ PWGAPVEVES LLVHPGDLLQ LRCRLRDDVQ ENSP00000393312/1-853 ATLCTAR--- PSPTLPEQAQ PWGAPVEVES FLVHPGDLLQ LRCRLRDDVQ BACU007426/1-731 AALCTAR--- PAPTLPEQ-- ---------- ---------- ---------- ENSBTAP00000020550/1-820 ATLCTAK--- PAPTLPEQAQ PWGAPVEVES LLVHPGDLLQ LRCRLRDDVQ 101 150 ENSTTRP00000004280/1-822 SINWLRDGVQ LVESNRTRIT GEEVEVRDSV PADSGLYACV TSSPSGSDTT bmy_16849T0/1-848 SINWLRDGVQ LVESNRTRIT GEEVEVRGSV PADSGLYACV TSSPSGSDTT ENSP00000393312/1-853 SINWLRDGVQ LAESNRTRIT GEEVEVQDSV PADSGLYACV TSSPSGSDTT BACU007426/1-731 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020550/1-820 SINWLRDGVQ LADSNRTRIT GEEVEVRGSV PADSGLYACV TSSPSGSDTT 151 200 ENSTTRP00000004280/1-822 YFSVNVSDAL PSSEDDDDDD DSSSEEKETD NTKPNRMPVA PYWTSPEKME bmy_16849T0/1-848 YFSVNVSDAL PSSEDDDDDD DSSSEEKETD NTKPNRMPVA PYWTSPEKME ENSP00000393312/1-853 YFSVNVSDAL PSSEDDDDDD DSSSEEKETD NTKPN--PVA PYWTSPEKME BACU007426/1-731 -------DAL PSSEDDDDDD DSSSEEKETD NTKPNRMPVA PYWTSPEKME ENSBTAP00000020550/1-820 YFSVNVSDAL PSSEDDDDDD DSSSEEKETD NTKPN--PVA PYWTSPEKME 201 250 ENSTTRP00000004280/1-822 KKLHAVPAAK TVKFKCPSSG TPNPTLRWLK NGKEFKPDHR IGGYKVRYAT bmy_16849T0/1-848 KKLHAVPAAK TVKFKCPSSG TPNPTLRWLK NGKEFKPDHR IGGYKVRYAT ENSP00000393312/1-853 KKLHAVPAAK TVKFKCPSSG TPNPTLRWLK NGKEFKPDHR IGGYKVRYAT BACU007426/1-731 KKLHAVPAAK TVKFKCPSSG TPNPTLRWLK NGKEFKPDHR IGGYKVRYAT ENSBTAP00000020550/1-820 KKLHAVPAAK TVKFKCPSSG TPNPTLRWLK NGKEFKPDHR IGGYKVRYAT 251 300 ENSTTRP00000004280/1-822 WSIIMDSVVP SDKGNYTCVV ENAYGSINHT YQLDVVERSP HRPILQAGLP bmy_16849T0/1-848 WSIIMDSVVP SDKGNYTCVV ENEYGSINHT YQLDVVERSP HRPILQAGLP ENSP00000393312/1-853 WSIIMDSVVP SDKGNYTCIV ENEYGSINHT YQLDVVERSP HRPILQAGLP BACU007426/1-731 WSIIMDSVVP SDKGNYTCVV ENEYGSINHT YQLDVVERSP HRPILQAGLP ENSBTAP00000020550/1-820 WSIIMDSVVP SDKGNYTCIV ENEYGSINHT YQLDVVERSP HRPILQAGLP 301 350 ENSTTRP00000004280/1-822 ANKTVALGSN VEFMCKVYSD PQPHIQWLKH IEVNGSKIGP DNLPYVQILK bmy_16849T0/1-848 ANKTVALGSN VEFMCKVYSD PQPHIQWLKH IEVNGSKIGP DNLPYVQILK ENSP00000393312/1-853 ANKTVALGSN VEFMCKVYSD PQPHIQWLKH IEVNGSKIGP DNLPYVQILK BACU007426/1-731 ANKTVALGSN VEFMCKVYSD PQPHIQWLKH IEVNGSKIGP DNLPYVQILK ENSBTAP00000020550/1-820 ANKTVALGSN VEFMCKVYSD PQPHIQWLKH IEVNGSKIGP DNLPYVQILK 351 400 ENSTTRP00000004280/1-822 TAGVNTTDKE MEVLHLRNVS FEDAGEYTCL AGNSIGLSHH SAWLTVL--- bmy_16849T0/1-848 HSGINSSDA- -EVLTLFNVT EAQSGEYVCK VSNYIGEANQ SAWLTVTRPV ENSP00000393312/1-853 TAGVNTTDKE MEVLHLRNVS FEDAGEYTCL AGNSIGLSHH SAWLTVL--- BACU007426/1-731 TAGVNTTDKE MEVLHLRNVS FEDAGEYTCL AGNSIGLSHH SAWLTVL--- ENSBTAP00000020550/1-820 TAGVNTTDKE MEVLHLRNVS FEDAGEYTCL AGNSIGLSHH SAWLTVL--- 401 450 ENSTTRP00000004280/1-822 -EALEERPAV MTSPLYLEII IYCTGAFLIS CMVGSVIIYK MKSGTKKSDF bmy_16849T0/1-848 AKALEERPAV MTSPLYLEII IYCTGAFLIS CMVGSVIIYK MKSGTKKSDF ENSP00000393312/1-853 -EALEERPAV MTSPLYLEII IYCTGAFLIS CMVGSVIVYK MKSGTKKSDF BACU007426/1-731 -EALEERPAV MTSPLYLEII IYCTGAFLIS CMVGSVIIYK MKSGTKKSDF ENSBTAP00000020550/1-820 -EALEERPAV MTSPLYLEII IYCTGAFLIS CMVGSVIIYK MKSGTKKSDF 451 500 ENSTTRP00000004280/1-822 HSQMAVHKLA KSIPLRRQVT VSADSSASMN SGVLLVRPSR LSSSGTPMLA bmy_16849T0/1-848 HSQMAVHKLA KSIPLRRQ-- VSADSSASMN SGVLLVRPSR LSSSGTPMLA ENSP00000393312/1-853 HSQMAVHKLA KSIPLRRQVT VSADSSASMN SGVLLVRPSR LSSSGTPMLA BACU007426/1-731 HSQMAVHKLA KSIPLRRQ-- VSADSSASMN SGVLLVRPSR LSSSGTPMLA ENSBTAP00000020550/1-820 HSQMAVHKLA KSIPLRRQVT VSADSSASMN SGVLLVRPSR LSSSGTPMLA 501 550 ENSTTRP00000004280/1-822 GVSEYELPED PRWELPRDRL VLGKPLGEGC FGQVVLAEAI GLDKDKPNRV bmy_16849T0/1-848 GVSEYELPED PRWELPRDRL VLGKPLGEGC FGQVVLAEAI GLDKDKPNRV ENSP00000393312/1-853 GVSEYELPED PRWELPRDRL VLGKPLGEGC FGQVVLAEAI GLDKDKPNRV BACU007426/1-731 GVSEYELPED PRWELPRDRL VLGKPLGEGC FGQVVLAEAI GLDKDKPNRV ENSBTAP00000020550/1-820 GVSEYELPED PRWELPRDRL VLGKPLGEGC FGQVVLAEAI GLDKDRPNRV 551 600 ENSTTRP00000004280/1-822 TKVAVKMLKS DATEKDLSDL ISEMEMMKMI GKHKNIINLL GACTQDGPLY bmy_16849T0/1-848 TKVAVKMLKS DATEKDLSDL ISEMEMMKMI GKHKNIINLL GACTQDGPLY ENSP00000393312/1-853 TKVAVKMLKS DATEKDLSDL ISEMEMMKMI GKHKNIINLL GACTQDGPLY BACU007426/1-731 TKVAVKMLKS DATEKDLSDL ISEMEMMKMI GKHKNIINLL GACTQDGPLY ENSBTAP00000020550/1-820 TKVAVKMLKS DATEKDLSDL ISEMEMMKMI GKHKNIINLL GACTQDGPLY 601 650 ENSTTRP00000004280/1-822 VIVXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16849T0/1-848 VIVEYASKGN LREYLQARRP PGLEYCYNPS RHPEEQLSSK DLVSCAYQVA ENSP00000393312/1-853 VIVEYASKGN LREYLQARRP PGLEYCYNPS HNPEEQLSSK DLVSCAYQVA BACU007426/1-731 VIVEYASKGN LREYLQARRP PGLEYCYNPS RHPEEQLSSK DLVSCAYQVA ENSBTAP00000020550/1-820 VIVEYASKGN LREYLQARRP PGLEYCYNPS HHPEEQLSSK DLVSCAYQVA 651 700 ENSTTRP00000004280/1-822 XXXXXXXXXX CIHRDLAARN VLVTEDNVMK IADFGLARDI HHIDYYKKTT bmy_16849T0/1-848 RGMEYLASKK CIHRDLAARN VLVTEDNVMK IADFGLARDI HHIDYYKKTT ENSP00000393312/1-853 RGMEYLASKK CIHRDLAARN VLVTEDNVMK IADFGLARDI HHIDYYKKTT BACU007426/1-731 RGMEYLASKK CIHRDLAARN VLVTEDNVMK IADFGLARDI HHIDYYKKTT ENSBTAP00000020550/1-820 RGMEYLASKK CIHRDLAARN VLVTEDNVMK IADFGLARDI HHIDYYKKTT 701 750 ENSTTRP00000004280/1-822 NGRLPVKWMA PEALFDRIYT HQSDVWSFGV LLWEIFTLGG SPYPGVPVEE bmy_16849T0/1-848 NGRLPVKWMA PEALFDRIYT HQSDVWSFGV LLWEIFTLGG SPYPGVPVEE ENSP00000393312/1-853 NGRLPVKWMA PEALFDRIYT HQSDVWSFGV LLWEIFTLGG SPYPGVPVEE BACU007426/1-731 NGRLPVKWMA PEALFDRIYT HQSDVWSFGV LLWEIFTLGG SPYPGVPVEE ENSBTAP00000020550/1-820 NGRLPVKWMA PEALFDRIYT HQSDVWSFGV LLWEIFTLGG SPYPGVPVEE 751 800 ENSTTRP00000004280/1-822 LFKLLKEGHR MDKPSNCTNE LYMMMRDCWH AVPSQRPTFK QLVEDLDRIV bmy_16849T0/1-848 LFKLLKEGHR MDKPSNCTNE LYMMMRDCWH AVPSQRPTFK QLVEDLDRIV ENSP00000393312/1-853 LFKLLKEGHR MDKPSNCTNE LYMMMRDCWH AVPSQRPTFK QLVEDLDRIV BACU007426/1-731 LFKLLKEGHR MDKPSNCTNE LYMMMRDCWH AVPSQRPTFK QLVEDLDRIV ENSBTAP00000020550/1-820 LFKLLKEGHR MDKPSNCTNE LYMMMRDCWH AVPSQRPTFK QLVEDLDRIV 801 850 ENSTTRP00000004280/1-822 ALTSNQEYLD LSMPLDQYSP SFPDTRSSTC SSGEDSVFSH EPLPEEPCLP bmy_16849T0/1-848 ALTSNQEYLD LSMPLDQYSP SFPDTRSSTC SSGEDSVFSH EPLPEEPCLP ENSP00000393312/1-853 ALTSNQEYLD LSMPLDQYSP SFPDTRSSTC SSGEDSVFSH EPLPEEPCLP BACU007426/1-731 ALTSNQEYLD LSMPLDQYSP SFPDTRSSTC SSGEDSVFSH EPLPEEPCLP ENSBTAP00000020550/1-820 ALTSNQEYLD LSMPLDQYSP SFPDTRSSTC SSGEDSVFSH EPLPEEPCLP 851 900 ENSTTRP00000004280/1-822 RHPAQLANGG LKRR bmy_16849T0/1-848 RHPAQLANGG LKRR ENSP00000393312/1-853 RHPAQLANGG LKRR BACU007426/1-731 RHPAQLANGG LKRR ENSBTAP00000020550/1-820 RHPAQLANGG LKRR