KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:54 2014 Check: 00 .. Name: ENSP00000264670/1-767 Len: 900 Check: 4466 Weight: 1.00 Name: ENSBTAP00000020559/1-777 Len: 900 Check: 8545 Weight: 1.00 Name: ENSTTRP00000012024/1-760 Len: 900 Check: 4435 Weight: 1.00 Name: bmy_21293T0/1-817 Len: 900 Check: 4743 Weight: 1.00 Name: BACU014712/1-742 Len: 900 Check: 6262 Weight: 1.00 // 1 50 ENSP00000264670/1-767 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020559/1-777 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012024/1-760 ---------- ---------- ---------- ---------- ---------- bmy_21293T0/1-817 SPWCACVSSG CPHRRLSPRG NPGPRPAGVS RPALWSHFPT QGCPRLLLLV BACU014712/1-742 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000264670/1-767 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020559/1-777 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012024/1-760 ---------- ---------- ---------- ---------- ---------- bmy_21293T0/1-817 VFLEHGSRRS GLFPEGSCRS GRGAGADPRG PRAAARKCSG LRVAARCVRA BACU014712/1-742 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000264670/1-767 -------MGR RSRGRRL--- QQQQRPEDAE DGAEGGGKRG EAGWEGGYPE ENSBTAP00000020559/1-777 -------MGR RSRGRRLQQQ QQQQRPGSAE D----GGKRN GAGWEGGYPE ENSTTRP00000012024/1-760 -------MGR RSRSRRL-QQ QQQQRPGSAE DGAEDGGKRS GAGWEGGYPE bmy_21293T0/1-817 ACAAAWAMGR RSRVRRL-QQ QQQQRPGSAE DGAEDGGKRS GAGWEGGYPE BACU014712/1-742 -------MGR RARVRRLQQQ QQQQRPGSAE DGAEDGGKRS GAGWEGGYPE 151 200 ENSP00000264670/1-767 IVKENKLFEH YYQELKIVPE GEWGQFMDAL REPLPATLRI TGYKSHAKEI ENSBTAP00000020559/1-777 IVKENKLFEH YYQELKIVPE GEWDQFMGAL REPLPATLRI TGYKSHAKEI ENSTTRP00000012024/1-760 IVKENKLFEH YYQELKIVPE GEWDQFMEAL REPLPATLRI TGYKSHAKEI bmy_21293T0/1-817 IVKENKLFEH YYQELKIVPE GEWDQFMDAL REPLPATLRI TGYKSHAKEI BACU014712/1-742 IVKENKLFEH YYQELKIVPE GEWDQFMDAL REPLPATLRI TGYKSHAKEI 201 250 ENSP00000264670/1-767 LHCLKNKYFK ELEDLEVDGQ KVEVPQPLSW YPEELAWHTN LSRKILRKSP ENSBTAP00000020559/1-777 LHCLKNKYFK ELEDLEVDGQ KVEVPQPLSW YPEELAWHTN LSRKILRKSP ENSTTRP00000012024/1-760 LHCLKNKYFK ELEDLEVDGQ KVEVPQPLSW YPEELAWHTN LSRKILRKSP bmy_21293T0/1-817 LHCLKNKYFK ELEDLEVDGQ KVEVPQPLSW YPEELAWHTN LSRKILRKSP BACU014712/1-742 LHCLKNKYFK ELEDLEVDGQ KVEVPQPLSW YPEELAWHTN LSRKILRKSP 251 300 ENSP00000264670/1-767 HLEKFHQFLV SETESGNISR QEAVSMIPPL LLNVRPHHKI LDMCAAPGSK ENSBTAP00000020559/1-777 QLEKFHQFLV SETESGNISR QEAVSMIPPL LLNAHPHHKI LDMCAAPGSK ENSTTRP00000012024/1-760 QLEKFHQFLV SETESGNISR QEAVSMIPPL LLNAHPHHKI LDMCAAPGSK bmy_21293T0/1-817 QLEKFHQFLV SETESGNISR QEAVSMIPPL LLNAHPHHKI LDMCAAPGSK BACU014712/1-742 QLEKFHQFLV SETESGNISR QEAVSMIPPL LLNAHPHHKI LDMCAAPGSK 301 350 ENSP00000264670/1-767 TTQLIEMLHA DMNVPFPEGF VIANDVDNKR CYLLVHQAKR LSSPCIMVVN ENSBTAP00000020559/1-777 TTQLIEMLHA DMNVPFPEGF VIANDVDNRR CYLLVHQAKR LGSPCIMVVN ENSTTRP00000012024/1-760 TTQLIEMLHA DMSVPFPEGF VIANDVDNKR CYLLVHQAKR LSSPCIMVVN bmy_21293T0/1-817 TTQLIEMLHA DMSVPFPEGF VIANDVDNKR CYLLVHQAKR LGSPCIMVVN BACU014712/1-742 TTQLIEMLHA DMSVPFPEGF VIANDVDNKR CYLLVHQAKR LGSPCIMVVN 351 400 ENSP00000264670/1-767 HDASSIPRLQ IDVDGRKEIL FYDRILCDVP CSGDGTMRKN IDVWKKWTTL ENSBTAP00000020559/1-777 HDASCIPRLQ VDVNGRKEIL FYDRILCDVP CSGDGTMRKN VDVWKKWSAL ENSTTRP00000012024/1-760 HDASCIPRLQ MDVNGKKEIL FYDRILCDVP CSGDGTMRKN IDVWKKWSTL bmy_21293T0/1-817 HDASCIPRLQ VDVNGKKEAL FYDRILCDVP CSGDGTMRKN IDVWKKWSTL BACU014712/1-742 HDASCIPRLQ VDVNGKKEAL FYDRILCDVP CSGDGTMRKN IDVWKKWSTL 401 450 ENSP00000264670/1-767 NSLQLHGLQL RIATRGAEQL AEGGRMVYST CSLNPIEDEA VIASLLEKSE ENSBTAP00000020559/1-777 NSLQLHGLQL RIATRGAEQL VEGGRMVYST CSLNPIEDEA VIASLLEKSE ENSTTRP00000012024/1-760 NSLQLHGLQL RIATRGAEQL VEGGRMVXXX XXXXXXXXXX XXXXXXXXXX bmy_21293T0/1-817 NSLQLHGLQL RIATRGAEQL VEGGRMVYST CSLNPIEDEA VIASLLEKSE BACU014712/1-742 NSLQLHGLQL RIATRGAEQL VEGGRMVYST CSLNPIEDEA VIASLLEKSE 451 500 ENSP00000264670/1-767 GALELADVSN ELPGLKWMPG ITQWKVMTKD GQWFTDWDAV PHSRHTQIRP ENSBTAP00000020559/1-777 GALELADVSS ELPGLKWVPG LSQWKVMTKD GQWFTSWDDV PHNRHTQIRP ENSTTRP00000012024/1-760 XALELADVSS ELPGLKWMPG LTQWKVMTKD GQWFAAWDDV PHSRHTQIRP bmy_21293T0/1-817 GALELADVSS ELPGLKWMPG LTQWKVMTKD GQWFAAWDDV PHSRHTQIRP BACU014712/1-742 GALELADVSS ELPGLKWMPG LTQWKVMTKD GQWFATWDDV PHSRHTQIRP 501 550 ENSP00000264670/1-767 TMFPPKDPEK LQAMHLERCL RILPHHQNTG GFFVAVLVKK SSMPWNKRQP ENSBTAP00000020559/1-777 TMFPPKDPEK LQAMHLERCL RILPHHQNTG GFFVAVLVKK ASMPWNKRPP ENSTTRP00000012024/1-760 TMFPPKDPEK SQAMHLERCL RILPHHQNTG GFFVAVLVKK SSMPWNKRPP bmy_21293T0/1-817 TMFPPKDPEK SQAMHLERCL RILPHHQNTG GFFVAVLVKK SSMPWNKRPP BACU014712/1-742 TMFPPKDPEK SQAMHLERCL RILPHHQNTG GFFVAVLVKK SSMPWNKRPP 551 600 ENSP00000264670/1-767 KLQGKSAETR ESTQLSPADL TEGKPTDPSK LESPSFTGTG DTEIAHATED ENSBTAP00000020559/1-777 KLQGELAEPR APVPPSPAEP MAGCTSDTSE LESKLAPGIS DTGAVERAEN ENSTTRP00000012024/1-760 KLQGESAEPR GPVQPGPADP MGRSVSHPLE LESKPAAGIS DTEATERAEN bmy_21293T0/1-817 KLQGESAEPR GPVQPGPADP MGRSVSHPLE LESKPAAGIS DTEATERAEN BACU014712/1-742 KLQGESAEPR GPVQPGPADP MGKSISHPLE LESKPAAGIS DTEATERAEN 601 650 ENSP00000264670/1-767 LENNGSKKDG VCGPPPSKKM KLFGFKEDPF VFIPEDDPLF PPIEKFYALD ENSBTAP00000020559/1-777 MDSSGSKRDG VCGPPPSKKM KLFGFKEDPF VFIPEDDPLF PPIQKFYALD ENSTTRP00000012024/1-760 LENNENKKDG VCGPPPSKKM KLFGFKEDPF VFIPEDDPLF PPIQKFYALG bmy_21293T0/1-817 LENNGNKKDG VCG------- ---------- ---------- ----KFYALG BACU014712/1-742 LENNGNKKDG VCGPPPSKKM KLFGFKEDPF VFIPEDDPLF PPIQKFYALG 651 700 ENSP00000264670/1-767 PSFPRMNLLT RTTEGKKRQL YMVSKELRNV LLNNSEKMKV INTGIKVWCR ENSBTAP00000020559/1-777 PSFPKTNLLT RTTEGKKRQL YMVSKELRNV LLNNSERMKV INTGIKVWCR ENSTTRP00000012024/1-760 PSFPKMNLLT RTVEGKRRQL YMVSKELRNV LLNNSERVKV INTGVKVWCR bmy_21293T0/1-817 PSFPKMNLLT RTVEGKRRQL YMVSKELRNV LLNNSERVKV INTGVKVWCR BACU014712/1-742 PSFPKMNLLT RTVEGKRRQL YMVSKELRNV LLNNSERVKV INTGVKVWCR 701 750 ENSP00000264670/1-767 NNSGEEFDCA FRLAQEGIYT LYPFINSRII TVSMEDVKIL LTQENPFFRK ENSBTAP00000020559/1-777 NNSGEEFDCA FRLAQEGIYT LYPFINSRII TVSIEDVQVL LTQENPFFRK ENSTTRP00000012024/1-760 NNSGEEFDCA FRLAQEGIYT LYPFINSRIV TVSMEDVKIL LTQENPFFRK bmy_21293T0/1-817 NNSGEEFDCA FRLAQEGIYT LYPFINSRII TVSMEDVKIL LTQENPFFRK BACU014712/1-742 NNSGEEFDCA FRLAQEGIYT LYPFINSRII IVSMEDVKIL LTQENPFFRK 751 800 ENSP00000264670/1-767 LSSETYSQAK DLAKGSIVLK YEPDSANPDA LQCPIVLCGW RGKASIRTFV ENSBTAP00000020559/1-777 LSSEAYSQVK DMAKGSVVLK YEPDPTKPDT LQCPIVLCGW RGKASVRTFV ENSTTRP00000012024/1-760 LSSEAYGQVK DMAKGSVVLK YEPDPTKPDT LQCPIVLCGW RGKASIRTFV bmy_21293T0/1-817 LSSEAYSQVK DMAKGSVVLK YEPDPAKADT LQCPIVLCGW RGKASVRTFV BACU014712/1-742 LSSEAYSQVK DMAKGSVVLK YEPDPAKPDT LQCPIVLCGW RGKASIRTFV 801 850 ENSP00000264670/1-767 PKNERLHYLR MMGLEVLGEK KKEGVILTNE SAA------- ---------- ENSBTAP00000020559/1-777 PRNERLHYLR MMGLEVPVGK KREGAAAAPG AASPAEPEDG PGAPSPAEPE ENSTTRP00000012024/1-760 PKNERLHYLR MMGLEVLAEK KKEGAVPTSE SAA------- ---------- bmy_21293T0/1-817 PKNERLHYLR MMGLEVSAEK KKERAVPTSE SAA------- ---------- BACU014712/1-742 PKNERLHYLR MMGLEVLAEK KRERAVPTSE SAA------- ---------- 851 900 ENSP00000264670/1-767 ------STGQ PDNDVTEGQR AGEPNSPDAE EANSPDVTAG CDPAGVHPPR ENSBTAP00000020559/1-777 HGPGAGSPAE PEVGAGAEQE AG-------- ----PDASSG GDPAEAGLPR ENSTTRP00000012024/1-760 ------SPGA PEDKAGAEQG AV-------- -AGRPDAATG SDPAAGPPCC bmy_21293T0/1-817 ------SPGA PEDQLGAEQG AG-------- ---------- ---------- BACU014712/1-742 ------SPGA PEDQLGAEQG AG-------- ---------- ----------