KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:55 2014 Check: 00 .. Name: ENSP00000378099/1-727 Len: 727 Check: 2164 Weight: 1.00 Name: ENSTTRP00000013228/1-727 Len: 727 Check: 5819 Weight: 1.00 Name: ENSBTAP00000020573/1-727 Len: 727 Check: 8277 Weight: 1.00 Name: bmy_12804T0/1-689 Len: 727 Check: 4938 Weight: 1.00 Name: BACU013864/1-727 Len: 727 Check: 7271 Weight: 1.00 // 1 50 ENSP00000378099/1-727 MNQKLLKLEN LLRFHTIYRQ LHSLCQRRAL RQWRHGFSSA YPVWTAQLCA ENSTTRP00000013228/1-727 MNQKILKLEN LLRFHTICRQ LHSLYQRRML AQWRHVFSSA YLVWTAQLYP ENSBTAP00000020573/1-727 MNRKILKLEN LLRFHTICRQ LHSLCQRRML AQWRHMFSSA YAVHTAQLYT bmy_12804T0/1-689 MNQKILKLEN LLRFHTICRQ LHSLYQRRML AQXRHVFSSA YPVWTAQLYA BACU013864/1-727 MNQKILKLEN LLRFHTICRQ LHSLYQRRML ARWRHVFSSA YPVWPAQLYA 51 100 ENSP00000378099/1-727 WPWPTDVLTG AALSQYRLLV TKKEEGPWKS QLSSTKSKKV VEVWIGMTIE ENSTTRP00000013228/1-727 QPWQTHALIR TALSQHRLLV TKKEKKSQKS QLSSTKSKKE VEVWIGMTVE ENSBTAP00000020573/1-727 RPWQTDALLR AALSQRRLLV TKKEKRSQKS PLPSTKSKKE VEVWLGMTVE bmy_12804T0/1-689 QPWQTDALIR AALSQHRLLV TKKEKKSQKS QLSSTKSKKE VEVWIGMTVE BACU013864/1-727 QPWQTDALIR AALSQHRLLV TKKEKKSQKS QLSSTKSKKE VEVWIGMTVE 101 150 ENSP00000378099/1-727 ELARAMEKNT DYVYEALLNT DIDIDSLEAD SHLDEVWIKE VITKAGMKLK ENSTTRP00000013228/1-727 ELARAMEKDI DCVYESLLNT AVDIDSLEAH SHLDEVWIKE VIKKSGMKLK ENSBTAP00000020573/1-727 ELARAMEKDI DCVYESLMNT AIDIDSLETH SRLDEVWIKE VIKKSGMKLK bmy_12804T0/1-689 ELARAMEKDI DCVYESLLNT AIDIDSLEAH SHLDEVWIKE VIKKSGMKLK BACU013864/1-727 ELARAMEKDI DCVYESLLNT AIDIDSLEAH SHLDEVWIKE VIKKSGMKLK 151 200 ENSP00000378099/1-727 WSKLKQDKVR KNKDAVRRPQ ADPALLTPRS PVVTIMGHVD HGKTTLLDKF ENSTTRP00000013228/1-727 WSKLKQDKVR ENKDAVKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020573/1-727 WSKLKQDKVR ENKDAVKRPQ ADPALLIPRS PVVTIMGHVD HGKTTLLDKL bmy_12804T0/1-689 WSKLKQDKVR ENKDAVKRPQ ADPALLIPRS PVVTIMGHVD HGKTTLLDKL BACU013864/1-727 WSKLKQDKVR ENKDAVKRPQ ADPALLIPRS PVVTVMGHVD HGKTTLLDKL 201 250 ENSP00000378099/1-727 RKTQVAAVET GGITQHIGAF LVSLPSGEKI TFLDTPGHAA FSAMRARGAQ ENSTTRP00000013228/1-727 XXXXXXXXXX XXXXXXXXXX XXSLPSGEKI TFLDTPGHAA FSAMRARGAQ ENSBTAP00000020573/1-727 RKTQVAAMEA GGITQHIGAF LVSLPSGEKI TFLDTPGHAA FSAMRARGTQ bmy_12804T0/1-689 RKTQVAAMEA GGITQHIGAF LVSLPSGEKI TFLDTPGHAA FSAMRARGAH BACU013864/1-727 RKTQVAAMEA GGITQHIGAF LVSLPSGEKI TFLDTPGHAA FSAMRARGAH 251 300 ENSP00000378099/1-727 VTDIVVLVVA ADDGVMKQTV ESIQHAKDAQ VPIILAVNKC DKAEADPEKV ENSTTRP00000013228/1-727 VTDIIILVVA ADDGVMKQTV ESIQHAKDAQ VPIVLAINKC DKAEADPEKV ENSBTAP00000020573/1-727 VTDIVILVVA ADDGVMKQTV ESIQHAKDAH VPIVLAINKC DKAEADPEKV bmy_12804T0/1-689 VTDIIILVVA ADDGVMKQTV ESIQHAKDAQ VPIVLAINKC DKAEADPERV BACU013864/1-727 VTDIIILVVA ADDGVMKQTV ESIQHAKDAQ VPVVLAINKC DKAEADPERV 301 350 ENSP00000378099/1-727 KKELLAYDVV CEDYGGDVQA VPVSALTGDN LMALAEATVA LAEMLELKAD ENSTTRP00000013228/1-727 KKELLAYDVV CEDYGGDIQA VHVSALTGDN MMALAEATIA LAEMLELKAD ENSBTAP00000020573/1-727 KKELLAYDVV CEDYGGDVQA VHVSALTGEN MMALAEATIA LAEMLELKAD bmy_12804T0/1-689 KKELLAYDVV CEDYGGDVQA VHVSALT--- ---------- ---KVPLHPD BACU013864/1-727 KKELLAYDVV CEDYGGDIQA VHVSALTGDN LMALVEATIA LAEMLELKAD 351 400 ENSP00000378099/1-727 PNGPVEGTVI ESFTDKGRGL VTTAIIQRGT LRKGSVLVAG KCWAKVRLMF ENSTTRP00000013228/1-727 PTGPVEGTVI ESFTDKGRGP VTTAIIQRGT LRKGSILVAG KSWAKVRLMF ENSBTAP00000020573/1-727 PTGAVEGTVI ESFTDKGRGP VTTAIIQRGT LRKGSILVAG KSWAKVRLMF bmy_12804T0/1-689 ---------- ---------- --YAVIQRGT LRKGSILVAG KSWAKVRLMF BACU013864/1-727 PTGPVEGTVI ESFTDKGRGP VTTAIIQRGT LRKGSILVAG KSWAKVRLMF 401 450 ENSP00000378099/1-727 DENGKTIDEA YPSMPVGITG WRDLPSAGEE ILEVESEPRA REVVDWRKYE ENSTTRP00000013228/1-727 DENDKVINEA CPSMPVGIIG WRDFPSAGDE ILEVESEPRA REVVHWRKYE ENSBTAP00000020573/1-727 DENGRAVNEA YPSMPVGIIG WRDLPSAGDE ILEVESEPRA REVVDWRKYE bmy_12804T0/1-689 DENDKAINEA CPSMPVGIIG WRDLPSAGDE ILEVESEPRA REVVHWRKYE BACU013864/1-727 DENDKAINEA CPSMPVGIIG WRDLPSAGDQ ILEVESEPRA REVVHWRKYE 451 500 ENSP00000378099/1-727 QEQEKGQEDL KIIEEKRKEH KEAHQKAREK YGHLLWKKRS ILRFLERKEQ ENSTTRP00000013228/1-727 QEQEKNKEDL ELIEEKRKEH QEAHRKAREK YGTLHWKARS FIKYKIKKQQ ENSBTAP00000020573/1-727 QEQEKNKEDL KLIEEKRKEH QEAHRKDREK YGTVHWKERS YIKYREKRQQ bmy_12804T0/1-689 QEQEKNKEDL ELIEEKRKEH QEAHRKAREK YGTLPWKERS FIKYKIKKQQ BACU013864/1-727 QEQEKNKEDL ELIEEKRKEH QEAHRKAREK YGTLPWKERS FIKYKIKKQQ 501 550 ENSP00000378099/1-727 IPLKPKEKRE RDSNVLSVII KGDVDGSVEA ILNIIDTYDA SHECELELVH ENSTTRP00000013228/1-727 QPLKPKEKAG GDSNVLPIII KGDVDGSVEA ILNIMDTYDA SHECELELVH ENSBTAP00000020573/1-727 QPLKPKEKLE RDSNVLPVIV KGDVDGSVEA ILNVMDTYDA SHECELDLVH bmy_12804T0/1-689 QPLKPKEKAG GDSNVLPIII KGDVDGSVEA ILNIMDTYDA SHECELELVH BACU013864/1-727 QPLKPKEKAG GDSNVLPIII KGDVDGSVEA ILNIMDTYDA SHECELELVH 551 600 ENSP00000378099/1-727 FGVGDVSAND VNLAETFDGV IYGFNVNAGN VIQQSAAKKG VKIKLHKIIY ENSTTRP00000013228/1-727 SGVGDISEND VNLAETFHGV IYGFNVNAGN VIQQSAAKKG VKIKLHKIIY ENSBTAP00000020573/1-727 FGVGDISEND VNLAETFHGV IYGFNVNAGN VIQQLAAKKG VKIKLHKIIY bmy_12804T0/1-689 FGVGDISEND VNLAETFHGV IYGFNVNAGN VIQQSAAKKG VKIKLHKIIY BACU013864/1-727 FGVGDISEND VNLAETFHGV IYGFNVNAGN VIQQSAAKKG VKIKLHKIIY 601 650 ENSP00000378099/1-727 RLVEDLQEEL SSRLPCAVEE HPVGEASILA TFSVTEGKKK VPVAGCRVQK ENSTTRP00000013228/1-727 RLIEDLQEEL SSRLPCIVEE HTIGEASILA TFSITEGKKK VPVAGCRVQK ENSBTAP00000020573/1-727 RLIEDLQEEL SSRLPCIVEE HPIGEASILA TFSITEGKKK VPVAGCRVQK bmy_12804T0/1-689 RLIEDLQEEL SSRLPCIVEE HTIGEASILA TFSITEGKKT VPVAGCRVQK BACU013864/1-727 RLIEDLQEEL SSRLPCIVEE HTIGEASILA TFSITEGKKK VPVAGCRVQK 651 700 ENSP00000378099/1-727 GQLEKQKKFK LTRNGHVIWK GSLTSLKHHK DDISIVKTGM DCGLSLDEDN ENSTTRP00000013228/1-727 GQLEKQKKFK LIRNGHVIWK GSLISLKHHK DDISVIKIGM DCGLSLDEEK ENSBTAP00000020573/1-727 GQIEKQKKFK LIRNGHVIWK GSLISLKHHK DDTSVVKTGM DCGLSLDEEK bmy_12804T0/1-689 GQLEKQKKFK LIRNGHVIWK GSLISLKHHK DDISVIKTGM DCGLSLDEEK BACU013864/1-727 GQLEKQKKFK LIRNGHVIWK GSLISLKHHK DDISVIKTGM DCGLSLDEEK 701 750 ENSP00000378099/1-727 MEFQVGDRIV CYEEKQIQAK TSWDPGF ENSTTRP00000013228/1-727 IEFKVGDDIV CYEEKEVLAK TSWDPGF ENSBTAP00000020573/1-727 IEFKVGDAII CYEEKEVPAK TSWDPGF bmy_12804T0/1-689 IEFKVGDDIV CYEEKEVLAK TSWDPGF BACU013864/1-727 IEFKVGDDIV CYEEKEVLAK TSWDPGF