KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:56 2014 Check: 00 .. Name: ENSTTRP00000014272/1-546 Len: 546 Check: 7675 Weight: 1.00 Name: ENSP00000359982/1-541 Len: 546 Check: 5174 Weight: 1.00 Name: ENSBTAP00000020574/1-546 Len: 546 Check: 6792 Weight: 1.00 Name: bmy_16907T0/1-387 Len: 546 Check: 6522 Weight: 1.00 Name: BACU009946/1-546 Len: 546 Check: 9485 Weight: 1.00 // 1 50 ENSTTRP00000014272/1-546 MTGEKIRSLR RDHKPSKEEG DLLEPGDEEA AAALGGTFTG GRIGTGSSSK ENSP00000359982/1-541 MTGEKIRSLR RDHKPSKEEG DLLEPGDEEA AAALGGTFTR SRIG-----K ENSBTAP00000020574/1-546 MTGEKIRSLR RDHKPSKEEG DLLEPGDEEA AAALGGTFTG GRLGTGGSGK bmy_16907T0/1-387 ---------- ---------- ---------- ---------- ---------- BACU009946/1-546 MTGEKIRSLR RDHKPSKEEG DLLEPGDEEA AAALGGTFTG GRIGTGSSSK 51 100 ENSTTRP00000014272/1-546 GGRACHKIFS NHHHRLQLKT APASSNPPGA PALPLHNSSV TTTSQSPALL ENSP00000359982/1-541 GGKACHKIFS NHHHRLQLKA APASSNPPGA PALPLHNSSV TANSQSPALL ENSBTAP00000020574/1-546 SGRACHKIFS NHHHRLQLKT APASSNPPGP PALPLHNSSA TPISQSPALL bmy_16907T0/1-387 ------MIIS THKR------ ---------- ---------- ---------- BACU009946/1-546 GGRACHKIFS NHHHRLQLKT APASSNAPGA PALPLHNSSV TTTSQSPALL 101 150 ENSTTRP00000014272/1-546 AGTNPVAVVA GGGSCPAHYP VHECVFKGDV RRLSSLIRTH NIGQKDNHXX ENSP00000359982/1-541 AGTNPVAVVA DGGSCPAHYP VHECVFKGDV RRLSSLIRTH NIGQKDNHGN ENSBTAP00000020574/1-546 AGTSPIAVVA GGGGCPAHYP VHECVFKGDV RRLSSLIRTH NIGQKDNHGN bmy_16907T0/1-387 ---------- ---------- ---------- ---------- ---------N BACU009946/1-546 AGTNPVAVVA GGGSCPAHYP VHECVFKGDV RRLSSLIRTH NIGQKDNHGN 151 200 ENSTTRP00000014272/1-546 XXXXXXXXXX XXXCAHLLLA HNAPVKVKNA QGWSPLAEAI SYGDRQMITA ENSP00000359982/1-541 TPLHLAVMLG NKECAHLLLA HNAPVKVKNA QGWSPLAEAI SYGDRQMITA ENSBTAP00000020574/1-546 TPLHLAVMLG NKECAHLLLA HNAPVKVKNA QGWSPLAEAI SYGDRQMITA bmy_16907T0/1-387 TPLHLAVMLG NKECAHLLLA HNAPVKVKNA QGWSPLAEAI SYGDRQMITA BACU009946/1-546 TPLHLAVMLG NKECAHLLLA HNAPVKVKNA QGWSPLAEAI SYGDRQMITA 201 250 ENSTTRP00000014272/1-546 LLRKLKQQSR ESVEEKRPRL LKALKELGDF YLELHWDFQS WVPLLSRILP ENSP00000359982/1-541 LLRKLKQQSR ESVEEKRPRL LKALKELGDF YLELHWDFQS WVPLLSRILP ENSBTAP00000020574/1-546 LLRKLKQQSR ESVEEKRPRL LKALKELGDF YLELHWDFQS WVPLLSRILP bmy_16907T0/1-387 LLRKLKQQSR ESVEEKRPRL LKALKELGDF YLELHWDFQS WVPLLSRILP BACU009946/1-546 LLRKLKQQSR ESVEEKRPRL LKALKELGDF YLELHWDFQS WVPLLSRILP 251 300 ENSTTRP00000014272/1-546 SDACKIYKQG INIRLDTTLI DFTDMKCQRG DLSFIFNGDA APSESFVVLD ENSP00000359982/1-541 SDACKIYKQG INIRLDTTLI DFTDMKCQRG DLSFIFNGDA APSESFVVLD ENSBTAP00000020574/1-546 SDACKIYKQG INIRLDTTLI DFTDMKCQRG DLSFIFNGDA APSESFVVLD bmy_16907T0/1-387 SDACKIYKQG INIRLDTTLI DFTDMKCQRG DLSFIFNGDA APSESFVVLD BACU009946/1-546 SDACKIYKQG INIRLDTTLI DFTDMKCQRG DLSFIFNGDA APSESFVVLD 301 350 ENSTTRP00000014272/1-546 NEQKVYQRIH HEESEMETEE EVDILMSSDI YSATLSTKSI SFTRAQTGWL ENSP00000359982/1-541 NEQKVYQRIH HEESEMETEE EVDILMSSDI YSATLSTKSI SFTRAQTGWL ENSBTAP00000020574/1-546 NEQKVYQRIH HEESEMETEE EVDILMSSDI YSATLSTKSI SFTRAQTGWL bmy_16907T0/1-387 NEQKVYQRIH HEESEMETEE EVDILMSSDI YSATLSTKSI SFTRAQTGWL BACU009946/1-546 NEQKVYQRIH HEESEMETEE EVDILMSSDI YSATLSTKSI SFTRAQTGWL 351 400 ENSTTRP00000014272/1-546 FREDKTERVG NFLADFYLVN GLVLESRKRR EHLSEEDILR NKAIMESLSK ENSP00000359982/1-541 FREDKTERVG NFLADFYLVN GLVLESRKRR EHLSEEDILR NKAIMESLSK ENSBTAP00000020574/1-546 FREDKTERVG NFLADFYLVN GLVLESRKRR EHLSEEDILR NKAIMESLSK bmy_16907T0/1-387 FREDKTERVG NFLADFYLVN GLVLESRKRR EHLSEEDILR NKAIMESLSK BACU009946/1-546 FREDKTERVG NFLADFYLVN GLVLESRKRR EHLSEEDILR NKAIMESLSK 401 450 ENSTTRP00000014272/1-546 GGNIMEQNFE PIRRQSLTPP PQNTITWEEY ISSENGKAPH LGRELVCKES ENSP00000359982/1-541 GGNIMEQNFE PIRRQSLTPP PQNTITWEEY ISAENGKAPH LGRELVCKES ENSBTAP00000020574/1-546 GGNIMEQNFE PIRRQSLTPP PQNTITWEEY ISAENGKAPH LGRELVCKES bmy_16907T0/1-387 GGNIMEQNFE PIRRQSLTPP PQNTITWEEY ISSENGKAPH LGRELVCKES BACU009946/1-546 GGNIMEQNFE PIRRQSLTPP PQNTITWEEY ISSENGKAPH LGRELVCKES 451 500 ENSTTRP00000014272/1-546 KKTFKATIAM SQEFPLGIES LLNVLEVIAP FKHFNKLREF VQMKLPPGFP ENSP00000359982/1-541 KKTFKATIAM SQEFPLGIEL LLNVLEVVAP FKHFNKLREF VQMKLPPGFP ENSBTAP00000020574/1-546 KKTFKATIAM SQEFPLGIES LLNVLEVIAP FKHFNKLREF VQMKLPPGFP bmy_16907T0/1-387 KKTFKATIAM SQEFPLGIES ---------- --------EF VQMKLPPGFP BACU009946/1-546 KKTFKATIAM SQEFPLGIES LLNVLEVIAP FKHFNKLREF VQMKLPPGFP 501 550 ENSTTRP00000014272/1-546 VKLDIPVFPT ITATVTFQEF RYDEFDGSIF TIPEDYKEDP SRFPDL ENSP00000359982/1-541 VKLDIPVFPT ITATVTFQEF RYDEFDGSIF TIPDDYKEDP SRFPDL ENSBTAP00000020574/1-546 VKLDIPVFPT ITATVTFQEF RYDEFDGSIF TIPEDYKEDP SRFPDL bmy_16907T0/1-387 VKLDIPVFPT ITATVTFQEF RYDEFDGSIF TIPEDYKEDP SRFPDL BACU009946/1-546 VKLDIPVFPT ITATVTFQEF RYDEFDGSIF TIPEDYKEDP SRFPDL