KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:57 2014 Check: 00 .. Name: ENSP00000230301/1-469 Len: 503 Check: 6187 Weight: 1.00 Name: ENSBTAP00000020582/1-472 Len: 503 Check: 6153 Weight: 1.00 Name: ENSTTRP00000015341/1-438 Len: 503 Check: 1933 Weight: 1.00 Name: bmy_02195T0/1-402 Len: 503 Check: 5591 Weight: 1.00 Name: BACU011731/1-437 Len: 503 Check: 1440 Weight: 1.00 // 1 50 ENSP00000230301/1-469 MAEEREPELY LKWKHCETPG VKTLCNLKHC ETPGVKTLCN LKKLLNRLQK ENSBTAP00000020582/1-472 MAEDMEPEFY LRW------- -------KHC ETPGVKTLCN LRTLLNQLQK ENSTTRP00000015341/1-438 MAEDSKPEFY LRW------- -------KHC ETPGIKTLCS LRTLLNKLQK bmy_02195T0/1-402 MAEDSEPEFY LRW------- -------KHC ETPGIKTLCN LRTLLNKLQK BACU011731/1-437 ---------- ---------- ---------- ---------- ---LLNKLQK 51 100 ENSP00000230301/1-469 DHREDVYLYI SGHLNPNKLY QPPETILQHW PNAHRPKGER ASEVGEPPAG ENSBTAP00000020582/1-472 NHRDDVHMYT SGHLNPNKLY RPPETILYHW PNANRPRESK VFGPERLSD- ENSTTRP00000015341/1-438 DHRDDVYRYS SGHLNPSKLY RPLETILHYW PNANRPKEAN VLGGEKPSDK bmy_02195T0/1-402 DHRDDVYMYT SGHLNPSKLY RPLETILYHW PNANRPKETN VFGVEKPSDK BACU011731/1-437 DHRDDVYTYT SGHLNPSKLY RPLETILYHW PNANRPKEAN VFGVEKPSDK 101 150 ENSP00000230301/1-469 KVARMKEALA HFTIHTALVP SEAQDTPLFR YLNPQASLSH TSEEDFLPVE ENSBTAP00000020582/1-472 KVKKMKDAWA HFTINTAVGP SDAENTPLFR YLNPPSQASH ASQEDVSPKA ENSTTRP00000015341/1-438 KTKKMKGALV YFAINTAVGP NGAENTPLFR YLNPLTRGSH ASEEDLIPKK bmy_02195T0/1-402 KIKKMKDALA YFTINTAVGP NDAKNTPLFR YLNPLTHGSH TSEEDLIPKK BACU011731/1-437 KIKKMKDALA YFTFNTAVGP NDAENTPLFR YLNSLTQGSH TSEKDLIPKK 151 200 ENSP00000230301/1-469 AVREGKEEKK GGPPGRGPPG WRRREELRLP DLKVLCYQEA GSRGT----- ENSBTAP00000020582/1-472 GLREV----- ------GSPA RPKREELRLP DMKVLKYKEV RSSRECVMSP ENSTTRP00000015341/1-438 VERKV----- --------PE RPEREELRWP KMKVLKYKEV KSSGP----- bmy_02195T0/1-402 GLREE----- ------GSPE RPKREELRWP KMKVLKYKEV KSSRECATSP BACU011731/1-437 GLREG----- ------GSPE RPKREELRWP KMKVLKYKEV KSSRECATCP 201 250 ENSP00000230301/1-469 --RDRHHYVS SYLAGATSAD RYRMFLRFQK EVLAKQDLLK NDFTGSKAAA ENSBTAP00000020582/1-472 PGRDEFQYVS SHLAAITKAD SYRKFLSFQK QVLAKQDLLM RDFTGSQAAR ENSTTRP00000015341/1-438 --RDEFQYLS SHLAGITKAD KYRKFMSFQK QVLAKQDVLK RDFTGSK-AT bmy_02195T0/1-402 PGRDEFQYLS SHLAGITKAD KYRKFLSFQK QVLAKQDVLT SDFTGSKVAT BACU011731/1-437 PGRDEFQYLS SHLAGITKAD KYRKFLSFQK QVLAKQDVWK SDFTGSKVAT 251 300 ENSP00000230301/1-469 GHERKLQQEL QKICTCSPQQ FNRLHVFGKV FEDICNSSLI FGDLLKKVKD ENSBTAP00000020582/1-472 CHEKKLEQEL QKICVCDPEE FNRLQVFGEV FEDICKSSLV FGDILKEIKE ENSTTRP00000015341/1-438 CHEKKLEQKL QKICVCDPEE FNRLQVFGEV FEDICNSSLI FGDILKEIKD bmy_02195T0/1-402 CHEKKLEQ-- ---------- ---------- ---------- ---------D BACU011731/1-437 CHEKKLEQKL QKICVCDPEE FNRLQVFGEV FEDICNSSLI FGDILKEIKD 301 350 ENSP00000230301/1-469 EYELYMATLL ESQPAAQYE- ----ALLAQL KALGQRPVKT ADMDLAREEL ENSBTAP00000020582/1-472 EYELYMLLLL KNHPTEQYK- ----SLLTQV QSLQKGKVKT ADVEWAREEL ENSTTRP00000015341/1-438 EYELYMLLLL KTQPTEQYK- ----TLLTHI QGLETRRVRT ADVGQAREEL bmy_02195T0/1-402 EYELYMLLLL KTQPTEQYKP HSAQTLLTHI QGLETRRVRT ADVNQAREEL BACU011731/1-437 EYELYMLLLL KTQPTEQYKP HSAQTLLTHI QGLETRRVRT ADVDQAREAL 351 400 ENSP00000230301/1-469 RMLVTATKAA LEQNDRLRSE LEMEVALLQS AKERSESSEK HIIDENRLTL ENSBTAP00000020582/1-472 RVLVTALRAA LDHDDRLRNE LEQERVLLEA ARNRAESPEK KVVKEENLTL ENSTTRP00000015341/1-438 RALVMAIKAA LDRNDKLRSE LELERMLLQS TKKRSESPEK NVMKEECLTL bmy_02195T0/1-402 RALVMTIKAA LDRNDKLRSE LELERMLLQS TKKRSESPEK NVMKEERLTL BACU011731/1-437 RALVMAIKAA LDRNDKLRSE LELERTLLQS TKKRSESPEK NVMKEERLTL 401 450 ENSP00000230301/1-469 TEKVEKKRCE ILSKWDEIQA LEKEIKTTLV HTGISDITEN RIKSIEHEAI ENSBTAP00000020582/1-472 IEKVEKKRCE VLHKWDEIQA LERLIKTSFV HTGILQITES KIKSLETETI ENSTTRP00000015341/1-438 IEKVEKKRCE VLNKWDEIQA LEREIKTTLV HTGILHITEK KIKSLETETI bmy_02195T0/1-402 IEKVEKKRCE VLNKWDEIQA LEREIKTTLV HTGILHITEN KIQSLE---- BACU011731/1-437 IEKVEKKRCE VLNKWDEIQA LEREIKTTLV HTGILHITEN KIKSLEEENP 451 500 ENSP00000230301/1-469 QLETENMIL- ---------- KKKI-KGPLE ------IYQG ICKIRGNRR- ENSBTAP00000020582/1-472 KLETANKILM KKIQFIVNFV KQIMGRNKLR EEEQQNLWGF IKEFAKLKET ENSTTRP00000015341/1-438 NLETENKIL- ---------- KKKI-QEPLG --------IY ICKIKKDR-- bmy_02195T0/1-402 PLEKSENIF- ---------- CEVSDQDMFE --------GQ L--------- BACU011731/1-437 SEEQSADFS- ---------- PEITGRNRVG ARTLAAREAG ATGRRPIQNR 501 550 ENSP00000230301/1-469 --- ENSBTAP00000020582/1-472 DIS ENSTTRP00000015341/1-438 --- bmy_02195T0/1-402 --- BACU011731/1-437 IF-