KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:59 2014 Check: 00 .. Name: ENSP00000159111/1-1096 Len: 1178 Check: 4588 Weight: 1.00 Name: ENSBTAP00000020586/1-1116 Len: 1178 Check: 5637 Weight: 1.00 Name: ENSTTRP00000016023/1-1080 Len: 1178 Check: 9930 Weight: 1.00 Name: bmy_06944T0/1-839 Len: 1178 Check: 8494 Weight: 1.00 Name: BACU002593/1-1121 Len: 1178 Check: 5810 Weight: 1.00 // 1 50 ENSP00000159111/1-1096 MGSEDHGAQN PSCKIMTFRP TMEEFKDFNK YVAYIESQGA HRAGLAKIIP ENSBTAP00000020586/1-1116 MGSEDHGAQN PSCKIMTFRP TMEEFKDFNK YVAYIESQGA HRAGLAKIIP ENSTTRP00000016023/1-1080 MGSEDHGAQN PSCKIMTFRP TMEEFKDFNK YVAYIESQGA HRAGLAKIIP bmy_06944T0/1-839 ---------- ---------- ---------- ---------- ---------- BACU002593/1-1121 MGSEDHGAQN PSCKIMTFRP TMEEFKDFNR YVAYIESQGA HRAGLAKIIP 51 100 ENSP00000159111/1-1096 PKEWKPRQTY DDIDDVVIPA PIQQVVTGQS GLFTQYNIQK KAMTVGEYRR ENSBTAP00000020586/1-1116 PKEWKPRQTY DDIDDVVIPA PIQQVVTGQS GLFTQYNIQK KAMTVGEYRR ENSTTRP00000016023/1-1080 PKEWKPRQTY DDIDDVVIPA PIQQVVTGQS GLFTQYNIQK KAMTVGEYRR bmy_06944T0/1-839 ---------- ---------- ---------- ---------- -------MRR BACU002593/1-1121 PKEWKPRQTY DDIDDVVIPA PIQQVVTGQS GLFTQYNIQK KAMTVGEYRR 101 150 ENSP00000159111/1-1096 LANSEKYCTP RHQDFDDLER KYWKNLTFVS PIYGADISGS LYDDDVAQWN ENSBTAP00000020586/1-1116 LANSEKYCTP RHQDFDDLER KYWKNLTFVS PIYGADISGS LYDDDVAQWN ENSTTRP00000016023/1-1080 LANSEKYCTP RHQDFDDLER KYWKNLTFVS PIYGADISGS LYDDXXXXXX bmy_06944T0/1-839 ---------- ---------- ---------- ---------- ---------- BACU002593/1-1121 LANSEKYCTP RHQDFDDLER KYWKNLTFVS PIYGADISGS LYDDDVAQWN 151 200 ENSP00000159111/1-1096 IGSLRTILDM VERECGTIIE GVNTPYLYFG MWKTTFAWHT EDMDLYSINY ENSBTAP00000020586/1-1116 IGNLRTILDM VERECGTIIE GVNTPYLYFG MWKTTFAWHT EDMDLYSINY ENSTTRP00000016023/1-1080 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06944T0/1-839 ---------- ---------- ---------- ---------- ---------- BACU002593/1-1121 IGNLRTILDM VERECGTIIE GVNTPYLYFG MWKTTFAWHT EDMDLYSINY 201 250 ENSP00000159111/1-1096 LHFGEPKSWY AIPPEHGKRL ERLAIGFFPG SSQGCDAFLR HKMTLISPII ENSBTAP00000020586/1-1116 LHFGEPKSWY AIPPEHGKRL ERLAIGFFPG SSQGCDAFLR HKMTLISPII ENSTTRP00000016023/1-1080 XXXXXXXXXY AIPPEHGKRL ERLAIGFFPG SSQGCDAFLR HKMTLISPII bmy_06944T0/1-839 ---------- --PP------ ---------- -------FLS RE-------- BACU002593/1-1121 LHFGEPKSWY AIPPEHGKRL ERLAIGFFPG SSQGCDAFLR HKMTLISPII 251 300 ENSP00000159111/1-1096 LKKYGIPFSR ITQEAGEFMI TFPYGYHAGF NHGFNCAEST NFATLRWIDY ENSBTAP00000020586/1-1116 LKKYGIPFSR ITQEAGEFMI TFPYGYHAGF NHGFNCAEST NFATLRWIDY ENSTTRP00000016023/1-1080 LKKYGIPFSR ITQEAGEFMI TFPYGYHAGF NHGFNCAEST NFATLRWIDY bmy_06944T0/1-839 ---------R ISREDG---- ---------- ---------- ---------- BACU002593/1-1121 LKKYGIPFSR ITQEAGEFMI TFPYGYHAGF NHGFNCAEST NFATLRWIDY 301 350 ENSP00000159111/1-1096 GKVATQCTCR KDMVKISMDV FVRILQPERY ELWKQGKDLT VLDHTRPTAL ENSBTAP00000020586/1-1116 GKVATQCTCR KDMVKISMDV FVRILQPERY ELWKQGKDLT VLDHTRPTAL ENSTTRP00000016023/1-1080 GKVATQCTCR KDMVKISMDV FVRILQPERY ELWKQGKDLT VLDHTRPTAL bmy_06944T0/1-839 ------CTCR KDMVKISMDV FVRILQPERY ELWKQGKDLT VLDHTRPTAL BACU002593/1-1121 GKVATQCTCR KDMVKISMDV FVRILQPERY ELWKQGKDLT VLDHTRPTAL 351 400 ENSP00000159111/1-1096 TSPELSSWSA SRASLKAKLL RR-------- ---------- ---------- ENSBTAP00000020586/1-1116 SSPELSTWSA SRASLKAKLL RRQISLKENR HWKKTEEERK PSLERKKEQT ENSTTRP00000016023/1-1080 SSPELSPWST SRASLKAKLL RR-------- ---------- ---------- bmy_06944T0/1-839 SSPELSTWSA SRASLKAKLL RR-------- ---------- ---------- BACU002593/1-1121 SSPELSTWSA SRASLKAKLL RRQISLKENR HWKKTEEERK PSLERKREQT 401 450 ENSP00000159111/1-1096 ------SHRK RSQPKKPKPE DPKFPGEGTA GAALLEEAGG SVKEEAGPEV ENSBTAP00000020586/1-1116 RRPGLSSHRK RSQPKKPKPD DPRSPGEGAA GVALLEEAGG STKEEAAPEA ENSTTRP00000016023/1-1080 ------SHRK RSQPKKPKPD DPKSPGEGAA GTALLEEAGG GMKEEATPEA bmy_06944T0/1-839 ------SHRK RSQPKKPKPD DPKSPGEGAA GTALLEEAGG GMKEEATPEA BACU002593/1-1121 RRPGLSSHRK RSQPKKPKPD DPKSPGEGAA GTALLEEAGG GMKEEATPEA 451 500 ENSP00000159111/1-1096 DPEEEEEEPQ PLPHGREAEG AEEDGRGKLR PTKAKSERKK KSFGLLPPQ- ENSBTAP00000020586/1-1116 DPEEEEEEAQ LLPQGREAEG SEEDGRGKLR LAKAKSDRKK KSYGSLHPHH ENSTTRP00000016023/1-1080 DPEEEEEESQ PLPQGREAEG SEEDGRGKLR PAKAKSDRKK KSYGPLHLQ- bmy_06944T0/1-839 DPEEEEEESQ PLPQGREAEG SEEDGRGKLR PAKAKSDRKK KSYGLPHLHH BACU002593/1-1121 DPEEEEEESQ PLPQGREAEG SEEDGRGKLR PAKAKSDRKK KSYGPPHLHH 501 550 ENSP00000159111/1-1096 ------LPPP PAHFPSEEAL WLPSPLEPPV LGPGPAAMEE SPLPAPLNVV ENSBTAP00000020586/1-1116 PL---LPPPP SSQF-TEEA- ---PLLDIPG PAPGLEAAEE SPLPPPLNVV ENSTTRP00000016023/1-1080 ------PPPP PTQFPTEEV- ---PLLEIPA PATGPEAAEE NPPPPPLNVV bmy_06944T0/1-839 PLMPQLPPPP PTQFPTEEV- ---PLLEIPA LATGPEAAEE NPPPPPLNVV BACU002593/1-1121 PLMPQLPPPP PTQFPTEEV- ---PLLEIPA PATGPEAAEE NPPPPPLNVV 551 600 ENSP00000159111/1-1096 PPEVPSEELE AKPRPIIPML YVVPRPGKAA FNQEHVSCQQ AFEHFAQKGP ENSBTAP00000020586/1-1116 PPKAPGEEPE AKPRPVIPML YVVPRPGP-T GNKGRVSCQQ ASEHFAQKGP ENSTTRP00000016023/1-1080 PPEAPSEEPE VKPRPIIPML FVVPRPGPAA GDKGRVSCQQ ASEHFAQKGP bmy_06944T0/1-839 PPEAPSEEPE VKPRPIIPML FVVPRPGPAA GDKGRVSCQQ ASEHFAQKGP BACU002593/1-1121 PPEAPSEEPE VKPRPIIPML FVVPRPGPAA GDKGRVSCQQ ASEHFAQKGP 601 650 ENSP00000159111/1-1096 TWKEPVSPME LTGPEDGAAS SGAGRMETKA RAGEGQAPST FSKLKMEIKK ENSBTAP00000020586/1-1116 TWKEQATPME LTGPEE---- --------ES GASEGQNPST FSKLKMEIKK ENSTTRP00000016023/1-1080 TWKEQVAPME LTGPEE---- --------ES GAGEVQAPST FSKLKMEIKK bmy_06944T0/1-839 TWKEQAAPME LTGPEE---- --------ES GVGEVQAPST FSKLKMEIKK BACU002593/1-1121 TWKEQAAPME LTGPEE---- --------ES GVGEVQAPST FSKLKMEIKK 651 700 ENSP00000159111/1-1096 SRRHPLGRPP TRSPLSVVKQ EASSDEEASP FSGEEDVSDP DALRPLLSLQ ENSBTAP00000020586/1-1116 SRRHPLGRPP TRSPLSVVKQ EASSDEESFP FSGDEDVGDP EALRSLMSLQ ENSTTRP00000016023/1-1080 SRRHPLGRPP TRSPLSVVKQ EASSDEEAFP FSGDEDVGDP EALRSLLSLQ bmy_06944T0/1-839 SRRHPLGRPP TRSPLSVVKQ EASSDEEAFP FSGDEDVGDP EALRSLLSLQ BACU002593/1-1121 SRRHPLGRPP TRSPLSVVKQ EASSDEEAFP FSGDEDVGDP EALRSLLSLQ 701 750 ENSP00000159111/1-1096 WKNRAASFQA ERKFNAAAAR TEPYCAICTL FYPYCQALQT EKEAPIASLG ENSBTAP00000020586/1-1116 WKNKASNFQA ERKFNVAAAL TEPYCAICTL FYPYSQSLQT EKEAPQAALG ENSTTRP00000016023/1-1080 WKNKAASFQA ERKFNAAAAL TEPYCAICTL FYPYSQSLQT EKETPQASLG bmy_06944T0/1-839 WKNKAASFQA ERKFNAAAAL TEPYCAICTL FYPYSQALQT EKETPQGSLG BACU002593/1-1121 WKNKAASFQA ERKFNAAAAL TEPYCAVCTL FYPYSQSLQT EKETPQGSLG 751 800 ENSP00000159111/1-1096 KGCPATLPSK SRQKTRPLIP EMCFTSGGEN TEPLPANSYI GDDGTSPLIA ENSBTAP00000020586/1-1116 EGSSAIPPSR SGQKTRPLIP EMCFTASGEN TEPLPANSYI GDDGTSPLIA ENSTTRP00000016023/1-1080 EGPSATPPSK SGQKTRPLIP EMCFTSSGEN TEPLPANSYI GDDGTSLLIS bmy_06944T0/1-839 EGPSATPPSK SGQKTRPLIP EMCFTSSGEN TEPLPANSYI GDDGTSLLIS BACU002593/1-1121 EGPSATPPSK SGQKTRPLIP EMCFTSSGEN TEPLPANSYI GDDGTSLLIS 801 850 ENSP00000159111/1-1096 CGKCCLQVHA SCYGIRPELV NEGWTCSRCA AHAWTAECCL CNLRGGALQM ENSBTAP00000020586/1-1116 CAKCCLQVHA SCYGIRPELV NEGWTCSRCT AHAWTAECCL CNLRGGALQM ENSTTRP00000016023/1-1080 CAKCCLQVHA SCYGIRPELV NEGWTCSRCA AHAWTAECCL CNLRGGALQM bmy_06944T0/1-839 CAKCCLQVHA SCYGIRPELV NEGWTCSRCA AHAWTAECCL CNLRGGALQM BACU002593/1-1121 CAKCCLQVHA SCYGIRPELV NEGWTCSRCA AHAWTAECCL CNLRGGALQM 851 900 ENSP00000159111/1-1096 TTDRRWIHVI CAIAVPEARF LNVIERHPVD ISAIPEQRWK L--------- ENSBTAP00000020586/1-1116 TTDRRWVHVI CAIAVPEVRF LNVMERHPVD ISGIPEQRWK L--------- ENSTTRP00000016023/1-1080 TTDRRWIHVI CAIAVPEVRF LNVMERHPVD ISAIPEQRWK L--------- bmy_06944T0/1-839 TTDRRWIHVI CAIAVPEVRF LNVMERHPVD ISAIPEQRWK LPWVSESLPG BACU002593/1-1121 TTDRRWIHVI CAIAVPEVRF LNVMERHPVD ISAIPEQRWK L--------- 901 950 ENSP00000159111/1-1096 ---------- ---------- ---------- --KCVYCRKR MKKVSGACIQ ENSBTAP00000020586/1-1116 ---------- ---------- ---------- --KCVYCRKR MKKVSGACIQ ENSTTRP00000016023/1-1080 ---------- ---------- ---------- --KCVYCRKR MKKVSGACIQ bmy_06944T0/1-839 DGPGGPVGGL PGAGGGGRGT GRSPIAAAVS PQRCVYCRKR MKRVSGACIQ BACU002593/1-1121 ---------- ---------- ---------- --RCVYCRKR MKRVSGACIQ 951 1000 ENSP00000159111/1-1096 CSYEHCSTSF HVTCAHAAGV LMEPDDWPYV VSITCLKHKS GGHAVQLLRA ENSBTAP00000020586/1-1116 CSCEHCSTSF HVTCAHAAGV LMEPDDWPYV VSITCFKHKS GGHSVQVMRA ENSTTRP00000016023/1-1080 CSCEHCSTSF HVTCAHAAGV LMEPDDWPYV VSITCFKHKS GGHTVQILRA bmy_06944T0/1-839 CSCEHCSTSF HVTCAHAAGV LMEPDDWPYV VSITCFKHKS GGHTVQILRA BACU002593/1-1121 CSCEHCSTSF HVTCAHAAGV LMEPDDWPYV VSITCFKHKS GGHTVQILRA 1001 1050 ENSP00000159111/1-1096 VSLGQVVITK NRNGLYYRCR VIGAASQTCY EVNFDDGSYS DNLYPESITS ENSBTAP00000020586/1-1116 VSLGQVVITK NRNGLYYRCR VIGTTTQTFY EVNFDDGSYS DNLYPESITS ENSTTRP00000016023/1-1080 VSLGQVVITK NRNGLYYRCR VIGTTTQTFY EVNFDDGSYS DNLYPESITS bmy_06944T0/1-839 VSLGQVVITK NRNGLYYRCR VIGTTTQTFY EVNFDDGSYS DNLYPESITS BACU002593/1-1121 VSLGQVVITK NRNGLYYRCR VIGTTTQTFY EVNFDDGSYS DNLYPESITS 1051 1100 ENSP00000159111/1-1096 RDCVQLGPPS EGELVELRWT DGNLYKAKFI SSVTSHIYQV EFEDGSQLTV ENSBTAP00000020586/1-1116 RDCARLGPPP EGEFVELRWT DGNLYRAKFI SSVTSHIYQV EFEDGSQLTV ENSTTRP00000016023/1-1080 RDCARLGPPP EGEFVELRWT DGNIYRAKFI SSVTSHIYQV EFEDGSQLTV bmy_06944T0/1-839 RDCARLGPPP EGEFVELRWT DGNIYRAKFI SSVTSHIYQV EFEDGSQLTV BACU002593/1-1121 RDCARLGPPS EGEFVELRWT DGNIYRAKFI SSVTSHIYQV EFEDGSQLTV 1101 1150 ENSP00000159111/1-1096 KRGDIFTLEE ELPKRVRSRL SLSTGAPQEP AFSGEEAKAA KRPRVGTPLA ENSBTAP00000020586/1-1116 KRGDIFTLDE ELPKRVRSRL SVSTGAPQES VFSGEEVKAA KRPRVGTPRA ENSTTRP00000016023/1-1080 KRGDIFTLDE ELPKRVRSRL SVTTGAPQEN VFSGEEVKAA KRPRVGTPRA bmy_06944T0/1-839 KRGDIFTLDE ELPKRVRSRL SVSTGAPQEN VFSGEEVKAA KRPRVGTPRA BACU002593/1-1121 KRGDIFTLDE ELPKRVRSRL SVSTGAPQEN VFSGEEVKAA KRPRVGTPRA 1151 1200 ENSP00000159111/1-1096 TEDSGRSQDY VAFVESLLQV QGRPGAPF ENSBTAP00000020586/1-1116 AEDSGRNPDY PAFMESLLQA QCWPGAPY ENSTTRP00000016023/1-1080 AEDSGRNPDY PAFMESLLQA QCWPGAPF bmy_06944T0/1-839 AEDSGRNLDY PAFMESLLQA QCWPGAPF BACU002593/1-1121 AEDSGRNLDY PAFMESLLQA HCWPGAPF