KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:59 2014 Check: 00 .. Name: ENSP00000386538/1-808 Len: 813 Check: 1667 Weight: 1.00 Name: ENSBTAP00000020595/1-802 Len: 813 Check: 34 Weight: 1.00 Name: BACU011926/1-662 Len: 813 Check: 2527 Weight: 1.00 Name: bmy_00758T0/1-752 Len: 813 Check: 5780 Weight: 1.00 Name: ENSTTRP00000016369/1-513 Len: 813 Check: 4265 Weight: 1.00 // 1 50 ENSP00000386538/1-808 METGTAPLVA PPRRHGAPAA PSPPPRGSRA GPVVVVAPGP PVTTATSAPV ENSBTAP00000020595/1-802 METGPAPLVA PPRRHGAPAA PSPPPRGSRA GPVLVVAPGP PVTTATSAPV BACU011926/1-662 ---------- ---------- ---------- ---------- ---------- bmy_00758T0/1-752 ---------- ---------- ---------- -----VAPGP PVTTATSAPV ENSTTRP00000016369/1-513 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000386538/1-808 TLVAPGEARP AWVPGSAETS APAPAPAPAP APAVTGSTVV VLTLEASPEA ENSBTAP00000020595/1-802 TLVAPGEARP AWVPGLTQTS ----DS--VP GPTVTASTEV GLTLEASPDA BACU011926/1-662 ---------- ---------- ---------- ---------- ---------- bmy_00758T0/1-752 TLVAPGEARP AWVPGPTQTS ----DSALAP APTVTGSTEV GLTLEASPEA ENSTTRP00000016369/1-513 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000386538/1-808 PKPQLPSGPE SPEPAAVAGV ETSRALAAGA DSPKTEEARP SPAPGPGTPT ENSBTAP00000020595/1-802 PRAQV-SGPE PLVPEAVAGA EMSVPQAPGA DPPKTEEAIT SPDPGPGTL- BACU011926/1-662 ---------- ---------- ---MALAPGA DSPKTEEART SPDPGPGTLT bmy_00758T0/1-752 LRAQV-SDPE PLVPEAVAGA ERSMALAPGA DSPKTEEART SPDPGPGTLT ENSTTRP00000016369/1-513 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000386538/1-808 GTPTRTPSRT APGALTAKPP LAPKPGTTVA SGVTARSA-- -SGQVTGGHG ENSBTAP00000020595/1-802 ---TRTPSRT APGALTAKPP LAPKPGTTVA SGVTARIAAV TAGQVTSGHG BACU011926/1-662 GTRTRTPSRT APGALTAKPP LAPKPGTTVA SGVTARVAAV TAGQVTSGHG bmy_00758T0/1-752 GARTRTPSRT APGALTAKPP LAPKPGTTVA SGVTARVAAV TAGQVTSGHG ENSTTRP00000016369/1-513 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000386538/1-808 AAAATSASAG QAPEDPSGPG TGPSGTCEAP VAVVTVTPAP EPAENSQDLG ENSBTAP00000020595/1-802 AAAATSASTG QAPEDPSGPG TGPPGTCEAQ VAVVTVTPAP EPAENSQDLG BACU011926/1-662 AAA--SASTG QASEDPSGPG TGPSGTCEAL AAVVTVTPAP EPAENSQDLG bmy_00758T0/1-752 AAA--SASTG QAPEDPSGPG TGPSGTCEAL VAVVTVTPAP EPAENSQDLG ENSTTRP00000016369/1-513 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000386538/1-808 STSSLGPGIS GPRGQAPDTL SYLDSVSLMS GTLESLADDV SSMGSDSEIN ENSBTAP00000020595/1-802 SMSSLGPGIS GPRGQAPDTL SYLDSVSLMS GTLESLADDV SSMGSDSEIN BACU011926/1-662 STSSLGPGIS GPRGQAPDTL SYLDSVSLMS GTLESLADDV SSMGSDSEIN bmy_00758T0/1-752 STSSLGPGIS GPRGQAPDTL SYLDSVSLMS GTLESLADDV SSMGSDSEIN ENSTTRP00000016369/1-513 ---------- ---------- --------MS GTLESLADDV SSMGSDSEIN 301 350 ENSP00000386538/1-808 GLALRKTDKY GFLGGSQYSG SLESSIPVDV ARQRELKWLD MFSNWDKWLS ENSBTAP00000020595/1-802 GLALRKTDKY GFLGGSQYSG SLESSIPVDV ARQRELKWLE MFSHWDKWLS BACU011926/1-662 GLALRKTDKY GFLGGSQYSG SLESSIPVDV ARQRELKWLE MFSHWDKWLS bmy_00758T0/1-752 GLALRKTDKY GFLGGSQYSG SLESSIPVDV ARQRELKWLE MFSHWDKWLS ENSTTRP00000016369/1-513 GLALRKTDKY GFLGGSQYSG SLESSIPVDV ARQRELKWLE MFSHWDKWLS 351 400 ENSP00000386538/1-808 RRFQKVKLRC RKGIPSSLRA KAWQYLSNSK ELLEQNPGKF EELERAPGDP ENSBTAP00000020595/1-802 RRFQKVKLRC RKGIPSSLRA KAWQYLSNSK ELLEQNPGKF EELERAPGDP BACU011926/1-662 RRFQKVKLRC RKGIPSSLRA KAWQYLSNSK ELLEQNPGKF EELERAPGDP bmy_00758T0/1-752 RRFQKVKLRC RKGIPSSLRA KAWQYLSNSK ELLEQNPGKF EELERAPGDP ENSTTRP00000016369/1-513 RRFQKVKLRC RKGIPSSLRA KAWQYLSNSK ELLEQNPGKF EELERAPGDP 401 450 ENSP00000386538/1-808 KWLDVIEKDL HRQFPFHEMF AARGGHGQQD LYRILKAYTI YRPDEGYCQA ENSBTAP00000020595/1-802 KWLDVIEKDL HRQFPFHEMF AARGGHGQQD LYRILKAYTI YRPDEGYCQA BACU011926/1-662 KWLDVIEKDL HRQFPFHEMF AARGGHGQQD LYRILKAYTI YRPDEGYCQA bmy_00758T0/1-752 KWLDVIEKDL HRQFPFHEMF AARGGHGQQD LYRILKAYTI YRPDEGYCQA ENSTTRP00000016369/1-513 KWLDVIEKDL HRQFPFHEMF AARGGHGQQD LYRILKAYTI YRPDEGYCQA 451 500 ENSP00000386538/1-808 QAPVAAVLLM HMPAEQAFWC LVQICDKYLP GYYSAGLEAI QLDGEIFFAL ENSBTAP00000020595/1-802 QAPVAAVLLM HMPAEQAFWC LVQICDKYLP GYYSAGLEAI QLDGEIFFAL BACU011926/1-662 QAPVAAVLLM HMPAEQAFWC LVQICDKYLP GYYSAGLEAI QLDGEIFFAL bmy_00758T0/1-752 QAPVAAVLLM HMPAEQAFWC LVQICDKYLP GYYSAGLEAI QLDGEIFFAL ENSTTRP00000016369/1-513 QAPVAAVLLM HMPAEQAFWC LVQICDKYLP GYYSAGLEAI QLDGEIFFAL 501 550 ENSP00000386538/1-808 LRRASPLAHR HLRRQRIDPV LYMTEWFMCI FARTLPWASV LRVWDMFFCE ENSBTAP00000020595/1-802 LRRASPLAHR HLRRQRIDPV LYMTEWFMCI FARTLPWASV LRVWDMFFCE BACU011926/1-662 LRRASPLAHR HLRRQRIDPV LYMTEWFMCI FARTLPWASV LRVWDMFFCE bmy_00758T0/1-752 LRRASPLAHR HLRRQRIDPV LYMTEWFMCI FARTLPWASV LRVWDMFFCE ENSTTRP00000016369/1-513 LRRASPLAHR HLRRQRIDPV LYMTEWFMCI FARTLPWASV LRVWDMFFCE 551 600 ENSP00000386538/1-808 GVKIIFRVAL VLLRHTLGSV EKLRSCQGMY ETMEQLRNLP QQCMQEDFLV ENSBTAP00000020595/1-802 GVKIIFRVAL VLLRHTLGSV EKLRSCQGMY ETMEQLRNLP QQCMQEDFLV BACU011926/1-662 GVKIIFRVAL VLLRHTLGSV EKLRSCQGMY ETMEQLRNLP QQCMQEDFLV bmy_00758T0/1-752 GTSIIFRVAL VLLRHTLGSV EKLRSCQGMY ETMEQLRNLP QQCMQEDFLV ENSTTRP00000016369/1-513 GVKIIFRVAL VLLRHTLGSV EKLRSCQGMY ETMEQLRNLP QQCMQEDFLV 601 650 ENSP00000386538/1-808 HEVTNLPVTE ALIERENAAQ LKKWRETRGE LQYRPSRRLH GSRAIHEERR ENSBTAP00000020595/1-802 HEVTNLQVTE ALIERENAAQ LKKWLETRGE LQYRPSRRLH GSRAIHEERR BACU011926/1-662 HEVTNLPVTE ALIERENSAQ LKKWQETRGE LQYRPSRRLH GSRAIHEERR bmy_00758T0/1-752 HEVTNLPVTE ALIERENSAQ LKKWRETRGE LQYRPSRRLH GSRAIHEERR ENSTTRP00000016369/1-513 HEVTNLPVTE ALIERENSAQ LKKWRETRGE LQYRPSRRLH GSRAIHEERR 651 700 ENSP00000386538/1-808 RQQPPLGPSS SLLSLPGLKS RGSRAAGGAP SPPPPVRRAS AGPAPGPVVT ENSBTAP00000020595/1-802 RQLPPLGPSS SLLSLPGLKS RGSRAGGGVP SPPPPVRRAS AGPAPGPVVT BACU011926/1-662 RQQPPLGPSS SLLSLPGLKS RGSRAAGGAP SPPPPVRRAS AGPAPGPLVT bmy_00758T0/1-752 RQQPPLGPSS SLLSLPGLKS RGSRAAGGAP SPPPPVRRAS AGPAPGPLVT ENSTTRP00000016369/1-513 RQQPPLGPSS SLLSLPGLKS RGSRAAGGAP SPPPPVRRAS AGPAPGPLVT 701 750 ENSP00000386538/1-808 AEGLHPSLPS PTGNSTPLGS -SKETRKQEK ERQKQEKERQ KQEKEREKER ENSBTAP00000020595/1-802 AEGLRPSLPS PTGNSAPLAP SSKEARRQEK ERQKQEKERE KERQKQEKER BACU011926/1-662 AEGLHPSLPS PTGNSTPLAP -SKEARRQEK ERQKQEKER- ---------- bmy_00758T0/1-752 AEGLHPSLPS PTGNSTPLAP -SKEARRQEK ERQKQEKERQ ---------- ENSTTRP00000016369/1-513 AEGLHPSLPS PTGNSTPLAP -SKEARRQEK ERQKQEKER- ---------- 751 800 ENSP00000386538/1-808 QKQEKEREKQ EKEREKQEKE RQKQEKKAQG RKLSLRRKAD GPPGPHDGGD ENSBTAP00000020595/1-802 EKQEKERQKQ EKEQQKQEKE RQKQEKKAQG RKLSLRRKAD GPPTPQDGGD BACU011926/1-662 ---------- ----EKQEKE RQKQEKKAQG RKLSLRRKAD GPPAPQDGGD bmy_00758T0/1-752 --------KQ EKERQKQEKE RQKQEKKAQG RKLSLRRKAD GPPAPQDGGD ENSTTRP00000016369/1-513 ---------- EKERQKQEKE RQKQEKKAQG RKLSLRRKAD GPPAPQDGGD 801 850 ENSP00000386538/1-808 RPSA-EARQD AYF ENSBTAP00000020595/1-802 RSSASEARQD AYF BACU011926/1-662 RPSASEARQD AYF bmy_00758T0/1-752 RPSASEARQD AYF ENSTTRP00000016369/1-513 RSSASEARQD AYF