KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:01 2014 Check: 00 .. Name: ENSTTRP00000009821/1-444 Len: 822 Check: 84 Weight: 1.00 Name: ENSP00000278829/1-445 Len: 822 Check: 279 Weight: 1.00 Name: ENSBTAP00000020612/1-443 Len: 822 Check: 2897 Weight: 1.00 Name: bmy_20293T0/1-312 Len: 822 Check: 8647 Weight: 1.00 Name: BACU005387/1-815 Len: 822 Check: 910 Weight: 1.00 // 1 50 ENSTTRP00000009821/1-444 ---------- ---------- ---------- --------MG GVGEPGG--G ENSP00000278829/1-445 ---------- ---------- ---------- --------MG GVGEPGPREG ENSBTAP00000020612/1-443 ---------- ---------- ---------- --------MG GVGEPDW--E bmy_20293T0/1-312 ---------- ---------- ---------- ---------- ---------- BACU005387/1-815 MDLAKESTEC PAREKCPVFL AMRSGTVRYA PSGLGLALKG NLGEQPWDTD 51 100 ENSTTRP00000009821/1-444 ---------- PAQLGATLPT FRWEQIRPH- ---------- ---NLPGDKW ENSP00000278829/1-445 ---------- PAQPGAPLPT FCWEQIRAH- ---------- ---DQPGDKW ENSBTAP00000020612/1-443 ---------- PGQRGAPLPT LRWEQVRRH- ---------- ---NLPGDKW bmy_20293T0/1-312 ---------- ---------- ---------- ---------- ---------- BACU005387/1-815 SQPHPNEGHP PPLEAVPVPW KSVGSCKSHR ESLGSLVETP AGKEAQGEED 101 150 ENSTTRP00000009821/1-444 LVIER----- ---------- ---------- ---------- ---------- ENSP00000278829/1-445 LVIER----- ---------- ---------- ---------- ---------- ENSBTAP00000020612/1-443 LVIER----- ---------- ---------- ---------- ---------- bmy_20293T0/1-312 ---------- ---------- ---------- ---------- ---------- BACU005387/1-815 LAASRLDVLR LRSSSMEIRE KGSEFLKEEL QKAQKELRLK DAECERLSRV 151 200 ENSTTRP00000009821/1-444 ---------- ---------- ---------- ---------- ---------- ENSP00000278829/1-445 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020612/1-443 ---------- ---------- ---------- ---------- ---------- bmy_20293T0/1-312 ---------- ---------- ---------- ---------- ---------- BACU005387/1-815 RTQLEQELEE LTASLFEEAH KMVREANMKQ AASEKQLKET RGKIDMLQAE 201 250 ENSTTRP00000009821/1-444 ---------- ---------- ---------- ---------- ---------- ENSP00000278829/1-445 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020612/1-443 ---------- ---------- ---------- ---------- ---------- bmy_20293T0/1-312 ---------- ---------- ---------- ---------- ---------- BACU005387/1-815 VTALKTLVIT STPASPNREL HPQLLSPTKA GPRKGHLRHK STSSALCPAV 251 300 ENSTTRP00000009821/1-444 ---------- ---------- ---------- ---------- --RVY----- ENSP00000278829/1-445 ---------- ---------- ---------- ---------- --RVY----- ENSBTAP00000020612/1-443 ---------- ---------- ---------- ---------- --RVY----- bmy_20293T0/1-312 ---------- ---------- ---------- ---------- ---------- BACU005387/1-815 CPVVGHALTP DKEGKEVDMT LFAEFQAWRE SPTLDKTSPF LERVYREDVG 301 350 ENSTTRP00000009821/1-444 ---------- ---------- ---------- ---------- ---------- ENSP00000278829/1-445 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020612/1-443 ---------- ---------- ---------- ---------- ---------- bmy_20293T0/1-312 ---------- ---------- ---------- ---------- ---------- BACU005387/1-815 PCLDFTMQEL SALVRAAVED NTLTIEPAAS QTLPAVKVAA VECGRTNGFR 351 400 ENSTTRP00000009821/1-444 ---------- ---------- ---------- ---------- ---------- ENSP00000278829/1-445 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020612/1-443 ---------- ---------- ---------- ---------- ---------- bmy_20293T0/1-312 ---------- ---------- ---------- ---------- ---------- BACU005387/1-815 APIDTTCALS GLACACRHRI RLGDSESHYY ISPSSRARIT AVCNFFTYIR 401 450 ENSTTRP00000009821/1-444 ---------D ISRWAQRHPG GSRLIG---- ---HHGAEDA TDAFHAFHQD ENSP00000278829/1-445 ---------D ISRWAQRHPG GSRLIG---- ---HHGAEDA TDAFRAFHQD ENSBTAP00000020612/1-443 ---------D ISRWAQRHPG GSRLIG---- ---HHGAEDA TDAFHAFHQD bmy_20293T0/1-312 ---------- ---------- ---------- ---------- -DAFHAFHQD BACU005387/1-815 YIQQGLVRQD VLALPDQAPH AQRLLEARGV LPLHQGSSLV RDAFHAFHQD 451 500 ENSTTRP00000009821/1-444 LNFVRKFLQP LLIGELAPEE PSQDGPQNAQ LIEDFRALRQ AVEDMKLFEA ENSP00000278829/1-445 LNFVRKFLQP LLIGELAPEE PSQDGPLNAQ LVEDFRALHQ AAEDMKLFDA ENSBTAP00000020612/1-443 LSFVRKFLQP LLIGELAPEE PSQDGPQNTQ LIEDFRALRQ AVEDMKLFEA bmy_20293T0/1-312 LNFVRKFLQP LLIGELAPEE PSQDGPQNAQ LIEDFRALRQ AVEDMKLFEA BACU005387/1-815 LNFVRKFLQP LLIGELAPEE PSQDGPQNAQ LIEDFRALRQ AVEDMKLFEA 501 550 ENSTTRP00000009821/1-444 KPTFFAFLLG HILAMEMLAW LVIYLLGPGW VPSTLAALIL AVSQAQSWCL ENSP00000278829/1-445 SPTFFAFLLG HILAMEVLAW LLIYLLGPGW VPSALAAFIL AISQAQSWCL ENSBTAP00000020612/1-443 KPAFFGLLLG HILAMEVLAW LMIYMLGPGW VPSTLAALIL AISQAQSWCL bmy_20293T0/1-312 KPTFFAFLLG HILAMEVLAW LIIYLLGPGW VPSTLAALIL A---AQSWCL BACU005387/1-815 KPTFFAFLLG HILAMEVLAW LIIYLLGPGW VPSTLAALIL AVSQAQSWCL 551 600 ENSTTRP00000009821/1-444 QHDLGHTSIF RKSRWNHVAQ QFVMGQLKGF SAHWWNFRHF QHLXXXXXXX ENSP00000278829/1-445 QHDLGHASIF KKSWWNHVAQ KFVMGQLKGF SAHWWNFRHF QH-HAKPNIF ENSBTAP00000020612/1-443 QHDLGHTSIF RNSRWNHLAQ QFVMGQLKGF SAHWWNFRHF QH-HAKPNIF bmy_20293T0/1-312 QHDLGHTSIF RKSRWNHVAQ QFVMGQLKGF SAHWWNFRHF QH-HAKPNIF BACU005387/1-815 QHDLGHTSIF RKSRWNHVAQ QFVMGQLKGF SAHWWNFRHF QH-HAKPNIF 601 650 ENSTTRP00000009821/1-444 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XGPPLLTLVN ENSP00000278829/1-445 HKDPDVTVAP VFLLGESSVE YGKKKRRYLP YNQQHLYFFL IGPPLLTLVN ENSBTAP00000020612/1-443 HKDPDVTVAP VFLLGESSVE YGKKKRRYLP YNHQHLYFFL IGPPLLTLVN bmy_20293T0/1-312 HKDPDVTVAP VFLLGESSVE YGKKKRRYLP YNHQHLYFFL IGPPLLTLVN BACU005387/1-815 HKDPDVTVAP VFLLGESSVE YGKKKRRYLP YNHQHLYFFL IGPPLLTLVN 651 700 ENSTTRP00000009821/1-444 FEVENLAYML VCMQW----- -MDLLWAASF YARFLFSYIP FYGVPGALFL ENSP00000278829/1-445 FEVENLAYML VCMQW----- -ADLLWAASF YARFFLSYLP FYGVPGVLLF ENSBTAP00000020612/1-443 FEVENLAYML VCMQW----- -MDLLWAASF YARFLLSYIP FYGIPGALLL bmy_20293T0/1-312 FEVENLAYML VCMQWTVSGG PARVPWAYSC GCRR------ -WGIRGQPLS BACU005387/1-815 FEVENLAYML VCMQW----- -TDLLWAASF YARFLLSYLP FYGVPGALFL 701 750 ENSTTRP00000009821/1-444 FVAVRVLESH WFVWITQMNH IPKEIGHEKH RDWASSQLAA TCNVEPSVFL ENSP00000278829/1-445 FVAVRVLESH WFVWITQMNH IPKEIGHEKH RDWVSSQLAA TCNVEPSLFT ENSBTAP00000020612/1-443 FVAVRVLESH WFVWITQMNH IPREIGHEKH RDWASSQLAA TCNVEPSLFI bmy_20293T0/1-312 TNANRVLESH WFVWITQMNH IPKEIGHEKH RDWASSQLAA TCNVEPSLFL BACU005387/1-815 FVAVRVLESH WFVWITQMNH IPKEIGHEKH RDWASSQLAA TCNVEPSLFL 751 800 ENSTTRP00000009821/1-444 DWFSGHLNFQ IEHHLFPTMP RHNYRRVAPL VKALCAKHGL SYEVKPFLTA ENSP00000278829/1-445 NWFSGHLNFQ IEHHLFPRMP RHNYSRVAPL VKSLCAKHGL SYEVKPFLTA ENSBTAP00000020612/1-443 DWFSGHLNFQ IEHHLFPTMP RHNYRRVAPL VKALCAKHGL SYEVKPFLTA bmy_20293T0/1-312 DWFSGHLNFQ IEHQ------ ---------- ---------- ---------- BACU005387/1-815 DWFSGHLNFQ IEHHLFPTMP RHNYRRVAPL VKALCAKHGL SYEVKPFLTA 801 850 ENSTTRP00000009821/1-444 LVDIIGSLKK SGNMWLEAYL HQ ENSP00000278829/1-445 LVDIVRSLKK SGDIWLDAYL HQ ENSBTAP00000020612/1-443 LVDIIRSLKK SGNVWLEAYL HQ bmy_20293T0/1-312 ---------- ---------- -- BACU005387/1-815 LVDIIGSLKK SGNMWLEAYL HQ