KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:05 2014 Check: 00 .. Name: ENSP00000251643/1-494 Len: 524 Check: 5950 Weight: 1.00 Name: ENSBTAP00000020622/1-467 Len: 524 Check: 8825 Weight: 1.00 Name: ENSTTRP00000003051/1-490 Len: 524 Check: 5972 Weight: 1.00 Name: bmy_13569T0/1-508 Len: 524 Check: 2458 Weight: 1.00 Name: BACU007042/1-488 Len: 524 Check: 1444 Weight: 1.00 // 1 50 ENSP00000251643/1-494 MDLSNNTMSL SVRTPGLSRR LSSQSV-IGR PRGMSASSVG SGYGGSAFGF ENSBTAP00000020622/1-467 ---------- ---------- ---------- ------SSIG SGYGGSAFGF ENSTTRP00000003051/1-490 VGLSRSTMSL SAHTSGMPQW LSSQSVTLGR ARGISASSIG SSYGGSAFGF bmy_13569T0/1-508 -------MSL SVRTSGLSQR LSSQSGTLGR ARGISASSIG SSYGGSAFGF BACU007042/1-488 -------MSL SVRTSGLSQR LSSQSGTLGR ARGISASSIG SSYGGSAFGF 51 100 ENSP00000251643/1-494 GASCGGGFSA ASMFGSSSG- -----FGGGS GSSMAGGLGA GYGRALGGGS ENSBTAP00000020622/1-467 GGNSGGGFSA ASMFGSSSGF GSSSGFGGAC GSSFAGGLGA GYGGAGGGG- ENSTTRP00000003051/1-490 GGSYGGGFTA ASMFASSSG- -----FGGGS GSSFAGGLGA GYGGARGGG- bmy_13569T0/1-508 GGSCGGGFSA ASMFGSSSG- -----FGGGS GSSFAGGLGA GYAGGRGGG- BACU007042/1-488 GGSCGGGFSA ASMFGSSSG- -----FGGGS GSSFAGGLGA GYAGGRGGG- 101 150 ENSP00000251643/1-494 FGGLGMGFGG SPGGGSLGIL SGNDGGLLSG SEKETMQNLN DRLASYLDKV ENSBTAP00000020622/1-467 FGGLGIGFGG SSGGGSLGIL PGIDGGLISG SEKETMKNLN DRLASYLDKV ENSTTRP00000003051/1-490 FGSLGIGFGG SPGGGSLGIL SGNDGGLLSG SEKETMQNLN DRLASYLDKV bmy_13569T0/1-508 FGSLGIGFGG SPGGGSLGIL SGNDGGLLSG SEKETMQNLN DRLASYLDKV BACU007042/1-488 FGSLGIGFGG SPGWGSLGIL SGNDGGLLSG SGKETMQNLN DRLASYLDKV 151 200 ENSP00000251643/1-494 RALEEANTEL ENKIREWYET RGTGTADA-S QSDYSKYYPL IEDLRNKIIS ENSBTAP00000020622/1-467 RALEEANTDL ETKIREWYET RGSGTGDPGS QNDYSKYYPL IEDLRNKIIS ENSTTRP00000003051/1-490 RALEEANADL ENKIREWYEI RGSG--DP-- PNDYSKYQLL IEDLRNKIIS bmy_13569T0/1-508 RALEEANADL ENKIREWYET RGSGTGDPRS QNDYSKYYLL IEDLRNKIIS BACU007042/1-488 RALEEANADL ENKIREWYET RGPGTGDPRS QNDYSKYYLL IEDLRNKIIS 201 250 ENSP00000251643/1-494 ASIGNAQLLL QIDNARLAAE DFRMKYENEL ALRQGVEADI NGLRRVLDEL ENSBTAP00000020622/1-467 ANIENAQLIL QIDNARLAAD DFRMKYENEL ALCQNVEADI NGLRRVLDEL ENSTTRP00000003051/1-490 ESTANAQLLL QIDNARLAAE DFRMKYENEL ALCQNVEADI NGLRKVLDEM bmy_13569T0/1-508 DSTANAQLLL QIDNAKLAAE DFRMKYENEL ALRQNVEADI NGLRRVLDEM BACU007042/1-488 DSTANAQLLL QIDNAKLAAE DFRMKYENEL ALRQNVEADI NGLRRVLDEM 251 300 ENSP00000251643/1-494 TLTRTDLEMQ IESLNEELAY MKKNHEDE-- ---------- --------LQ ENSBTAP00000020622/1-467 TLARADLETQ IETLNEELAY LKKNHEEE-- ---------- --------LQ ENSTTRP00000003051/1-490 TLARADLEMQ IETLNEELAY RKKNHEEE-- ---------- ---------L bmy_13569T0/1-508 TLARADLETQ IETLNEELAY LRKNHEELWW WCLLKFNTLE ALFDFVIFII BACU007042/1-488 TLARADLETQ IETLNEELAY LRKNHEEE-- ---------- --------LQ 301 350 ENSP00000251643/1-494 SFRVGGPGEV SVEMDAAPGV DLTRLLNDMR AQYETIAEQN RKDAEAWFIE ENSBTAP00000020622/1-467 SCRAGGPGQV SVEMDAAPGV DLTRLLNDMR AQYETIAEQN RKDAEAWFIE ENSTTRP00000003051/1-490 SFRAGGPGEV SVEMDAAPGV DLTSLLNDMR GQYEAVAQQN REDAEACFIE bmy_13569T0/1-508 CFRAGGPGQV SVEMDAVPGV DLTSLLNDMR GQYEAIAEHN REDAEAWFIE BACU007042/1-488 SFRAGGPGQV SVEMDAAPGV DLTSVLNDMR GQYEAIAEQN REDAEAWFIE 351 400 ENSP00000251643/1-494 KSGELRKEIS TNTEQLQSSK SEVTDLRRAF QNLEIELQSQ LAMKKSLEDS ENSBTAP00000020622/1-467 KSGELRKEIS SNTEQLQSSK SEVTDLRRAL QNLEIELQSQ LAMKKSLEDS ENSTTRP00000003051/1-490 KSAELRKEIS SNTEELQSSK SVVTDLRRVL QTLEIELQSQ LATKKSLDDS bmy_13569T0/1-508 KSGELRKEIS SNTEELQSSK SVVTDLRRAL QNVEIELQSQ LAMKKSLEDS BACU007042/1-488 KSGELRKEIS SNTEELQCSK SVVTDLRRAL QNLEIELQSQ FAMKKSLEDS 401 450 ENSP00000251643/1-494 LAEAEGDYCA QLSQVQQLIS NLEAQLLQVR ADAERQNVDH QRLLNVKARL ENSBTAP00000020622/1-467 LAETEGDYCG QLSQVQQLIG SLEEQLLQVR ADAERQSADY QRLLNVKARL ENSTTRP00000003051/1-490 LAETEGDYYS QLSQVRQLIG NVEEQLLQVR GDAERQSADY QLLLNIKAHL bmy_13569T0/1-508 LAETEGDYCG QLSQAQQLIG SLEEQLLQVR ADAERQSADY QLLLNIKARL BACU007042/1-488 LAETEGDYCG QLSQARQLIG SLEEQLLQVR ADAERQSADY QLLLNIKARL 451 500 ENSP00000251643/1-494 ELEIETYRRL LDGEAQGDGL EESLFVTDSK SQAQSTDSSK DPTKTRKIKT ENSBTAP00000020622/1-467 ELEIETYRRL LDGEAQGDSL VESSYVTAST SQAPSTDSSQ DPNKARKIKT ENSTTRP00000003051/1-490 ELEIETYRRL LDGEAQSDCL DESSSVTASN SQAPSTDSSK DPTRARKIKT bmy_13569T0/1-508 ELEIETYRRL LDGEAQGDRL DESSHVTAST SQAPSTDSSK DPTRARKIKT BACU007042/1-488 ELEIETYRRL LDGEAQGDSL DESSHVTAST SQAPSTDSSK DPTRARKIKT 501 550 ENSP00000251643/1-494 VVQEMVNGEV VSSQVQEIEE LM-- ENSBTAP00000020622/1-467 IVQEVVNGEV VSSQVKEIEE LIVR ENSTTRP00000003051/1-490 IVQEVVNGEV VSSQVQEIEE II-- bmy_13569T0/1-508 IVQEVVNGEV VSSQVQEIEE LI-- BACU007042/1-488 IVQEVVNGEV VSSQVQEVEE LI--