KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:05 2014 Check: 00 .. Name: ENSP00000233202/1-550 Len: 552 Check: 6428 Weight: 1.00 Name: ENSBTAP00000020627/1-548 Len: 552 Check: 3648 Weight: 1.00 Name: bmy_03173T0/1-469 Len: 552 Check: 1391 Weight: 1.00 Name: ENSTTRP00000012252/1-536 Len: 552 Check: 4463 Weight: 1.00 Name: BACU012701/1-547 Len: 552 Check: 8971 Weight: 1.00 // 1 50 ENSP00000233202/1-550 MTGDKGPQRL SGSSYGSISS PTSPTSPGPQ QAPPRETYLS EKIPIPDTKP ENSBTAP00000020627/1-548 MSGDTGPPKQ GGTRYGSIS- --SPPSPEPQ QAPPGGTYLS EKIPIPDTES bmy_03173T0/1-469 MTGDTGPPKL SRTRYGSIS- --SPPNPGLQ QEPPGGTYLS KKIPIPDAKP ENSTTRP00000012252/1-536 MTGDTGPPKL SRTRYGSIS- --SPPNPGLQ QEPPGGTYLS KKIPIPDAEP BACU012701/1-547 MTGDTGPPKL SRTRYGSIS- --SPPNPGLQ QEPPGGTYLS KKIPIPDAEP 51 100 ENSP00000233202/1-550 GTFSLRKLWA FTGPGFLMSI AFLDPGNIES DLQAGAVAGF KLLWVLLWAT ENSBTAP00000020627/1-548 GAFSLRKLWA FTGPGFLMSI AFLDPGNIES DLQAGAVAGF KLLWVLLWAT bmy_03173T0/1-469 GAFSLRKLWA FTGPGFLMSI AFLDPGNIES DLQAGAVAGF KLLWVLLWAT ENSTTRP00000012252/1-536 GTFSLRKLWA FTGPGFLMSI AFLDPGNIES DLQAGAVAGF KLLWVLLWAT BACU012701/1-547 GAFSLRKLWA FTGPGFLMSI AFLDPGNIES DLQAGAVAGF KLLWVLLWAT 101 150 ENSP00000233202/1-550 VLGLLCQRLA ARLGVVTGKD LGEVCHLYYP KVPRTVLWLT IELAIVGSDM ENSBTAP00000020627/1-548 VLGLLCQRLA ARLGVVTGKD LGEVCHLYYP KVPRILLWLT IELAIVGSDM bmy_03173T0/1-469 VLGLLCQRLA ARLGVVTGKD LGEVCHLYYP KV-------- ---------- ENSTTRP00000012252/1-536 VLGLLCQRLA ARLGVVTGKD LGEVCHLYYP KVPRTLLWLT IELAIVGSDM BACU012701/1-547 VLGLLCQRLA ARLGVVTGKD LGEVCHLYYP KVPRILLWLT IELAIVGSDM 151 200 ENSP00000233202/1-550 QEVIGTAIAF NLLSAGRIPL WGGVLITIVD TFFFLFLDNY GLRKLEAFFG ENSBTAP00000020627/1-548 QEVIGTAIAF SLLSAGRIPL WGGVLITVVD TFFFLFLDNY GLRKLEAFFG bmy_03173T0/1-469 -----SLVHL DRKPLERIPL WGGVLITIVD TFFFLFLDNY GLRKLEAFFG ENSTTRP00000012252/1-536 QEVIGTAIAF NLLSAGRIPL WGGVLITIVD TFFFLFLDNY GLRKLEAFFG BACU012701/1-547 QEVIGTAIAF NLLSAGRIPL WGGVLITIVD TFFFLFLDNY GLRKLEAFFG 201 250 ENSP00000233202/1-550 LLITIMALTF GYEYVVARPE QGALLRGLFL PSCPGCGHPE LLQAVGIVGA ENSBTAP00000020627/1-548 FLITIMALTF GYEYVVAQPA QGALLQGLFL PSCPGCGQPE LLQAVGIIGA bmy_03173T0/1-469 FLITIMALTF GYEYVVARPA QGALLRGLFL PLCPGCGQPE LLQAVGIIGA ENSTTRP00000012252/1-536 FLITIMALTF GYEYVVARPA QGALLRDLFL PSCPGCGQPE LLQAVGIIGA BACU012701/1-547 FLITIMALTF GYEYVVARPA QGALLRGLFL PLCPGCGQPE LLQAVGIIGA 251 300 ENSP00000233202/1-550 IIMPHNIYLH SALVKSREID RARRADIREA NMYFLIEATI ALSVSFIINL ENSBTAP00000020627/1-548 IIMPHNIYLH SSLVKSREVD RSRRADIREA NMYFLIEATI ALSVSFLINL bmy_03173T0/1-469 IIMPHNIYLH SALVKSREID RARRADIREA NMYFLIEAAI ALSVSFFINL ENSTTRP00000012252/1-536 IIMPHNIYLH SALVKSREID RTRRADIREA NMYFLIEAAI ALSVSFFINL BACU012701/1-547 IIMPHNIYLH SALVKSREID RARRADIREA NMYFLIEAAI ALSVSFFINL 301 350 ENSP00000233202/1-550 FVMAVFGQAF YQKTNQAAFN ICANSSLHDY AKIFPMNNAT VAVDIYQGGV ENSBTAP00000020627/1-548 FVMAVFGQAF YKQTNQAAFN ICADSSLHDY APIFPRNNLT VAVDIYQGGV bmy_03173T0/1-469 FVVAVFGQAF YQQTNQAAFN VCANSSLHDY AKIFPMNNLT VAVDIYQGG- ENSTTRP00000012252/1-536 FVVAVFGQAF YQQTNQAAFN VCANSSLHDY AKIFPRNNLT VAVDIYQGGV BACU012701/1-547 FVVAVFGQAF YQQTNQAAFN VCANSSLHDY AKIFPTNNLT VAVDIYQGGV 351 400 ENSP00000233202/1-550 ILGCLFGPAA LYIWAIGLLA AGQSSTMTGT YAGQFVMEGF LRLRWSRFAR ENSBTAP00000020627/1-548 ILGCLFGPPA LYIWAVGLLA AGQSSTMTGT YAGQFVMEGF LKLRWSRFAR bmy_03173T0/1-469 ---------- ---------- ---------- ---------F LKLRWSRFAR ENSTTRP00000012252/1-536 ILGCLFGPAA LYIWAVGLLA AGQSSTMTGT YAGQFVMEGF LKLRWSRFAR BACU012701/1-547 ILGCLFGPAA LYIWAVGLLA AGQSSTMTGT YAGQFVMEGF LKLRWSRFAR 401 450 ENSP00000233202/1-550 VLLTRSCAIL PTVLVAVFRD LRDLSGLNDL LNVLQSLLLP FAVLPILTFT ENSBTAP00000020627/1-548 VLLTRSCAIL PTVLLAVFRD LRDLSGLNDL LNVLQSLLLP FAVLPILTFT bmy_03173T0/1-469 VLLTRSCAIL PTMLVAVFRD LRDLSGLNDL LNVLQSLLGP ---------- ENSTTRP00000012252/1-536 VLLTRSCAIL PTVLVAVFRD LRDLSGLNDL LNVLQSLLLP FAVLPILTFT BACU012701/1-547 VLLTRSCAIL PTMLVAVFRD LRDLSGLNDL LNVLQSLLLP FAVLPILTFT 451 500 ENSP00000233202/1-550 SMPTLMQEFA NG-LLNKVVT SSIMVLVCAI NLYFVVSYLP SLPHPAYFGL ENSBTAP00000020627/1-548 SMPALMQEFA NG-LVSKVIT SSIMVLVCAV NLYFVISYLP SLPHPAYFSL bmy_03173T0/1-469 ------QPWE AGFVVSKACT SSIMVLICAI NLYFVVSYLP SLPHPAYFSL ENSTTRP00000012252/1-536 SMPALMQEFT NG-LVSK--- TSIMVLICAL --YFV--SLP S-THPAYFSL BACU012701/1-547 SMPTLMQEFT NG-PVSKACT SSIMVLICAI NLYFVVSYLP SLPHPAYFSL 501 550 ENSP00000233202/1-550 AALLAAAYLG LSTYLVWTCC LAHGATFLAH SSHHHFLYGL LEEDQK-GET ENSBTAP00000020627/1-548 VALLAAAYLG LTTYLVWTCL ITQGATLLAH SSHQRFLYGL PEEDQEKGRT bmy_03173T0/1-469 VALLAAVYLG LTTYLAWTCL ITHGATLLAH GSHQHFLYGL PEEDQE-EKT ENSTTRP00000012252/1-536 -ALLAAVYLG LTIYLTWTCL ITHGATLLAH SSHQHFLYGL PEEDQ---KA BACU012701/1-547 VALLAAVYLG LTTYLAWTCL ITHGATRLAH GSHQHFLYGL PEEDQE-EKT 551 600 ENSP00000233202/1-550 SG ENSBTAP00000020627/1-548 SG bmy_03173T0/1-469 SG ENSTTRP00000012252/1-536 SG BACU012701/1-547 SG