KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:06 2014 Check: 00 .. Name: ENSTTRP00000012463/1-690 Len: 831 Check: 1290 Weight: 1.00 Name: ENSP00000366586/1-691 Len: 831 Check: 9168 Weight: 1.00 Name: ENSBTAP00000020631/1-654 Len: 831 Check: 7882 Weight: 1.00 Name: bmy_04754T0/1-826 Len: 831 Check: 4098 Weight: 1.00 Name: BACU017205/1-611 Len: 831 Check: 5818 Weight: 1.00 // 1 50 ENSTTRP00000012463/1-690 ---------- ---------- -MCFWRKLSV FGGPLFLLLS LVPLTETERP ENSP00000366586/1-691 ---------- ---------- -MCFRTKLSV SWVPLFLLLS RVFSTETDKP ENSBTAP00000020631/1-654 ---------- ---------- -MCFWTKPSV SWVSLFLLLS LDPSTETEKP bmy_04754T0/1-826 TFLQLRVDTV NANPRTSIRG RLGLKEEWKC ASGESFLLI- --PLTETEKP BACU017205/1-611 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012463/1-690 STPDSSGTWS PGQLTEVLHV LSAEEPTPLN HSRSLIRTLL EKTGCPRRTD ENSP00000366586/1-691 SAQDSRSRGS SGQPADLLQV LSAGDHPPHN HSRSLIKTLL EKTGCPRRRN ENSBTAP00000020631/1-654 STQDSSSTWS PGQLTEVLRV LSADDPRPLN HSRSLIRTLL EKTGCPRRTD bmy_04754T0/1-826 STPDSNGTWS PGQLTEILHV LSAEEPTPLN HSRSLIRTLL EKTGCPRRTD BACU017205/1-611 ---------- ----MEILHV LSAQEPTPLN HSRSLIRTLL EKTGCPRRTH 101 150 ENSTTRP00000012463/1-690 GRQGDCNLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000366586/1-691 GMQGDCNLCF EPDALLLIAG GNFEDQLREE VVQRVSLLLL YYIIHQEEIC ENSBTAP00000020631/1-654 GRQGDCNLCF EPDALLLIAG GDFEDQLKEE VIQRVSLLLL YYIIHQEEIC bmy_04754T0/1-826 GRQGDCNLCF DPDALLLIAG GDFKDQLREE VVQRVSLLLL YYIIHQEEIC BACU017205/1-611 GRQGDCNLCF DPDALLLIAG GDFEDQLREE VVQRVSLLLL YYIIHQEEIC 151 200 ENSTTRP00000012463/1-690 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000366586/1-691 SSKLNMSNKE YKFYLHSLLS LRQDEDSSFL SQNETEDILA FTRQYFDTSQ ENSBTAP00000020631/1-654 SSKLNMSNKE YTFYLHSLLS LRQDEDSYFL SQNETEDILA FTRQYFDTSR bmy_04754T0/1-826 SSKLNMSNKE YTFYLHSLLS LRQDEDSYFL SQNETEDILA FTRQYFDTSR BACU017205/1-611 SSKLNMSNKE YTFYLHSLLS LRQDEDSYFL SQNETEDILA FTRQYFDTSR 201 250 ENSTTRP00000012463/1-690 XXXXXXXXXX XXXXXXXXXG ADE-TLPQLA ETIIALSLQG VCLGQRNLPS ENSP00000366586/1-691 SQCMETKTLQ KKSGIVSSEG ANESTLPQLA AMIITLSLQG VCLGQGNLPS ENSBTAP00000020631/1-654 NQCMETKVLQ KKSGILSSDG ADENTLPQLA ATIIALSLQG VCLGQRNLPP bmy_04754T0/1-826 SQCMETKVLQ KKSGISSSDG ADENTLPQLA ETIIALSLQG VCLGQRNLPS BACU017205/1-611 SQCMETKVLQ KKSGVSSSDG ADENTLPQLA ETIIALSLQG VCLGQRNLPS 251 300 ENSTTRP00000012463/1-690 PDYFTEYIFS SLNSTNTLHL SELDQLLNTL WTKNTCIRKD RIHQLQRKQN ENSP00000366586/1-691 PDYFTEYIFS SLNRTNTLRL SELDQLLNTL WTRSTCIKNE KIHQFQRKQN ENSBTAP00000020631/1-654 PDYFTEYIFS ALNSTNTLHL SELDKLLNTL WTKSTCIRKD KIHQLRRKQN bmy_04754T0/1-826 PDYFTEYIFS SLNSTNTLHL SELDQLLXTL WTKNTCIRKD RIHQLQRKQN BACU017205/1-611 PDYFTEYIFS SLNSTNTLHL SELDQLLNTL WTKNTCIRKD RLHQLQRKQN 301 350 ENSTTRP00000012463/1-690 NLTVHDWAYP NLSVREDPES DDSPVSWDQX XXXXXXXXXX XXXXXXXXXX ENSP00000366586/1-691 NIITHDQDYS NFSSSMEKES EDGPVSWDQT CFSARQLVEI FLQKGLSLIS ENSBTAP00000020631/1-654 SLTLHDGDYS NLSVSMDPES EDGPISWDQT CFSAGQLVNI FLQNKLSPIS bmy_04754T0/1-826 NLTIHDWAYP NLSVSEDPES DDSPISWDQT CFSAGQLVEI FLQNKLSAIS BACU017205/1-611 NLTIHDWAYP NGSVSKDPGS DDSPISWAQT CFSAGQLVEI FLQNKLPAIS 351 400 ENSTTRP00000012463/1-690 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXYGY STMAVTLLTL ENSP00000366586/1-691 KEDFKQMSPG IIQQLLSCSC HLPKDQQAKL PPTTLEKYGY STVAVTLLTL ENSBTAP00000020631/1-654 KEDFKQMSPG IIQQLLSCSC QLPQNQQAKI APTTLEKYGY STVAVTLLTL bmy_04754T0/1-826 KEDFKQMSPG IIQQLLSCSC QLPQDQQAKL APPTPEKYGY STMAVTVLTL BACU017205/1-611 KEDFKQMSPG IIQQLLSCSC HLPQDQQAKL PPPTPEKYGY STMAVTLLTL 401 450 ENSTTRP00000012463/1-690 GSMLGTTLTL FHCCEESYRL ILQLFVGLAV GTLSGDALLH LIPQVLGLHE ENSP00000366586/1-691 GSMLGTALVL FHSCEENYRL ILQLFVGLAV GTLSGDALLH LIPQVLGLHK ENSBTAP00000020631/1-654 GSMLGTTLIL FHSCEENYRL ILQLFVGLAV GTLSGDALLH LIPQILGLHM bmy_04754T0/1-826 GSMLGTTLIL FHCCEENYRL ILQLFVGLAV GTLSGDALLH LIPQVLGLHK BACU017205/1-611 GSMLGTTLIL FHCCEENYRL ILQLFVGLAV GTLSGDALLH LIPQVLGLHK 451 500 ENSTTRP00000012463/1-690 QEASESGHFH EHKGHIWKLL GLIGGIHGFF LIEKCFLLLV SPSAEQGMSL ENSP00000366586/1-691 QEAPEFGHFH ESKGHIWKLM GLIGGIHGFF LIEKCFILLV SPNDKQGLSL ENSBTAP00000020631/1-654 QETSEFGHFY ENKGHIWKLL GLIGGIHGFF LIEKCFTLLV SPGAK----- bmy_04754T0/1-826 QEASEFGHFH ENKGHIWKLL GLIGGIHGFF LIEKCFILLV SPSAEQGMSL BACU017205/1-611 QEASEFGHFH ENKGHIWKLL GLIGGIHGFF LIEKCFILLV SPSAE----- 501 550 ENSTTRP00000012463/1-690 VNGHMGHSSH LAFNTELSDQ SGRGKSASTI QLKGPEDAQA AEIPIGSLNA ENSP00000366586/1-691 VNGHVGHSHH LALNSELSDQ AGRGKSASTI QLKSPEDSQA AEMPIGSMTA ENSBTAP00000020631/1-654 ---------- ---------- ---------- --KGPEDAQA AEIPIPSVNT bmy_04754T0/1-826 VNGHMGHSRH LAFNTELSDQ SGRGKSASTI QLKGPED--A AEIPIGSLNA BACU017205/1-611 ---------- ---------- ---------- --KGPEDAQA VEIPIGSLNT 551 600 ENSTTRP00000012463/1-690 PSRKCKTISL LAIMILVGDS LHNFADGLVI GAAFSSSSES GVTTTIAILC ENSP00000366586/1-691 SNRKCKAISL LAIMILVGDS LHNFADGLAI GAAFSSSSES GVTTTIAILC ENSBTAP00000020631/1-654 PNRKCKTISL LAIMILVGDS LHNFADGLVI GAAFSSSSEA GVTTTIAILC bmy_04754T0/1-826 PNRKCKTISL LAIMILVGDS LHNFADGLVI GAAFSSSSES GVTTTIAILC BACU017205/1-611 PNRKCKTISL LAIMILVGDS LHNFADGLVI GAAFSSSSES GVTTTIAILC 601 650 ENSTTRP00000012463/1-690 HEIPHEMGDF AVLLSSGLPI KIAILMNFIS ALTAFIGLYI GLSVSADPCI ENSP00000366586/1-691 HEIPHEMGDF AVLLSSGLSM KTAILMNFIS SLTAFMGLYI GLSVSADPCV ENSBTAP00000020631/1-654 HEIPHEMGDF AVLLSSGLPV KIAILMNFIS ALTAFIGLYI GLSVSTDPCI bmy_04754T0/1-826 HEIPHEMGDF AVLLSSGLPI KIAILMNFIS ALTAFIGLYI GLSVSTDPCI BACU017205/1-611 HEIPHEMGDF AVLLSSGLPI KIAILMNFIS ALTAFIGLYI GLSVSTDPCI 651 700 ENSTTRP00000012463/1-690 QNWILTITAG MFLYLSLVEM L---PEMTHV QTQRPW---- ---------- ENSP00000366586/1-691 QDWIFTVTAG MFLYLSLVEM L---PEMTHV QTQRPW---- ---------- ENSBTAP00000020631/1-654 QNWILTVTAG MFLYLSLVEM L---PEMTHV QTQRPW---- ---------- bmy_04754T0/1-826 QNWILTITAG MFLYLSLVEM CSLSSSMMDV YKEKTSPGST VFFSSLDKRD BACU017205/1-611 QNWILTVTAG MFLYLSLVEM L---PEMTHV QTQRPW---- ---------- 701 750 ENSTTRP00000012463/1-690 -----LMFLL QN-------- ---------- ---FGLTLGW L--------- ENSP00000366586/1-691 -----MMFLL QN-------- ---------- ---FGLILGW L--------- ENSBTAP00000020631/1-654 -----LMFLL QN-------- ---------- ---FGLTLGW L--------- bmy_04754T0/1-826 FIFNDMIYYL KNKLIHFEEH YSFSLRKSLG CFLFCSALGF FVCSCLVFCF BACU017205/1-611 -----FMFLL QN-------- ---------- ---FGLSLGW L--------- 751 800 ENSTTRP00000012463/1-690 -SLLLL---- ---------- ---------- -AIYEQ---- ---------- ENSP00000366586/1-691 -SLLLL---- ---------- ---------- -AIYEQ---- ---------- ENSBTAP00000020631/1-654 -SLFLL---- ---------- ---------- -AIYEQ---- ---------- bmy_04754T0/1-826 DALLKLLFTD MIMGAETILC FENIPRHRKI RSIYETHSRT LNKSSAIQSI BACU017205/1-611 -SLLLL---- ---------- ---------- -AIYEQ---- ---------- 801 850 ENSTTRP00000012463/1-690 --NIKI---- ---------- ---------- - ENSP00000366586/1-691 --NIKI---- ---------- ---------- - ENSBTAP00000020631/1-654 --NIKI---- ---------- ---------- - bmy_04754T0/1-826 IYNLKLALLT ETEICCNSIH CFLFFLNFKL Y BACU017205/1-611 --NIKI---- ---------- ---------- -