KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:12:07 2014 Check: 00 .. Name: ENSP00000330031/1-882 Len: 1251 Check: 8847 Weight: 1.00 Name: ENSBTAP00000020633/1-875 Len: 1251 Check: 798 Weight: 1.00 Name: bmy_17848T0/1-1127 Len: 1251 Check: 5785 Weight: 1.00 Name: BACU008817/1-652 Len: 1251 Check: 5035 Weight: 1.00 // 1 50 ENSP00000330031/1-882 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020633/1-875 ---------- ---------- ---------- ---------- ---------- bmy_17848T0/1-1127 MPCQPPHQVL FSPWRDPPPC SSTRGAPTQT HPGVPPPGGP SRSSRPCTQH BACU008817/1-652 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000330031/1-882 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020633/1-875 ---------- ---------- ---------- ---------- ---------- bmy_17848T0/1-1127 KNTQGPPPII PPPSSPASSP VGSAPTQGSS TPQEATAALQ TLSGWLRWLP BACU008817/1-652 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000330031/1-882 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020633/1-875 ---------- ---------- ---------- ---------- ---------- bmy_17848T0/1-1127 ALGVAPPPPP GTYLLLDGAQ QPLPGLRLCG VTRGNCRSAE GWGPRLGAAL BACU008817/1-652 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000330031/1-882 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020633/1-875 ---------- ---------- ---------- ---------- ---------- bmy_17848T0/1-1127 PPPRRPASPY PPAPKPWLGA LRSECGRRRW FLGASPGCCG RGGAGRAPSD BACU008817/1-652 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000330031/1-882 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020633/1-875 ---------- ---------- ---------- ---------- ---------- bmy_17848T0/1-1127 GQGARHSGSV DPEPEESELG DGLTVLCPKE PGQKSALRRC GAGGEGPEGT BACU008817/1-652 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000330031/1-882 ---------- ---------- -----MPGRA RTRARGRARR R---ESYQQE ENSBTAP00000020633/1-875 ---------- ---------- -----MTGRA RVHARGRRRD TPPSEPAQPE bmy_17848T0/1-1127 KLWVHHAQIF LIPEEEGRVI AFRTAMTGRA RVRARGRVRN PASVAPAKPE BACU008817/1-652 ---------- ---------- -----MTGRA RVRARGRVRN PASVEPAKPE 301 350 ENSP00000330031/1-882 APGGPRAPGS ATTQEPPQLQ ST-------- ---------- ---PRPLQEE ENSBTAP00000020633/1-875 AARGHPMPPV PRTDPPLSFA DL-------- ---------- ---PRQIQPR bmy_17848T0/1-1127 VARGSRMPQV PRTDPPRSFI DIVRC----- ---------- ---------- BACU008817/1-652 VARGSRMPEV PRTDPPRSFV DTVRCGTAVS FLMFLKMRCW AQQPRQIQPR 351 400 ENSP00000330031/1-882 VPVVRPLQPR AARG-GAGGG AQSQGVKEPG PEAGLHTAPL QERR-IGGVF ENSBTAP00000020633/1-875 LQSLTGVRHV AEAGPPAGAE ATSQPSEELK PASESQESLL RKKRDVGRDY bmy_17848T0/1-1127 ---------- -----GTAFH ACLH-VEELQ LASGLQESSL RERRDVGRDY BACU008817/1-652 LKQLWDDSHV AGAGPPTGAD GTPQPSEELQ LASGLQESSL RERRDVGRDY 401 450 ENSP00000330031/1-882 QDLVVNTRQD MKHVKDSKTG SEGTVVQLLA NHFRVISRPQ WVAYKYNVDY ENSBTAP00000020633/1-875 RDFVVNTRQN LVHVRESTKG TQGSPVMLFS NHVRLKSCSQ RHLYKYNVIY bmy_17848T0/1-1127 RDFVVNTWQK LGHVRESTKG TLGSPVMLFS NHVQLKSCSH RNLYKYNVIY BACU008817/1-652 RDFVVNTRQK LGHVRESTK- ---------- ---------- ---------- 451 500 ENSP00000330031/1-882 KPDIEDGNLR TILLDQHRRK FGERHIFDGN SLLLSRPLK- ---------- ENSBTAP00000020633/1-875 TPDIEDGRKR EALLSELEKL LGNRCIYDGN SLLLPHSLG- ---------- bmy_17848T0/1-1127 TPDIEDGRKR EALLSELEKL LGHRCICDGR SLLLLHSLGK RLTRNGFVTQ BACU008817/1-652 ---------- -----ELRDL FSL------- ---------- ---------- 501 550 ENSP00000330031/1-882 ---------- -----ERRVE WLSTTKDKNI VKITVEFSKE LTPTSPDCLR ENSBTAP00000020633/1-875 ---------- -----ETKKE VVSKLKNEP- VKITFELSRE LQTTSPDCLR bmy_17848T0/1-1127 WSLVSLEELR DLFSLSQKKE VVSKLKNQP- VKITFELSRE LQTTSPDCLR BACU008817/1-652 ---------- -----SQKKE VVSKLKNQP- VKITFELSRE LQTTSPDCLC 551 600 ENSP00000330031/1-882 YYNILFRRTF KLLDFEQVGR NYYTKKKAIQ LYRHGTSLEI WLGYVTSVLQ ENSBTAP00000020633/1-875 YYNILFRKML EKMDLNQIGR NYYNKNKKTE FNEYRRWLEI WPGYVTSILP bmy_17848T0/1-1127 YYNILFRRML EKMDLNQVGH NYYNKSKKTE FYKNR--LEI WPGYVTSILP BACU008817/1-652 YYNILFRRML EEMDLNQVGC NYYNKSKKTE FYKNR--LEI WPGYVTSILP 601 650 ENSP00000330031/1-882 YENSITLCAD VSHKLLRIET AYDFIKRTSA QAQTGNIREE VTNKLIGSIV ENSBTAP00000020633/1-875 YETGLTLCAD VSHKLLRMET AYDLISHTRE KARGEDAKEK ILRKLVGSSV bmy_17848T0/1-1127 YETGLTLCAD VSHKLLRMET AYDLISHTRE KARGEDAKEK ILKKLVGSSV BACU008817/1-652 YETGLTLCAD VSHKLLRMET AYDLISHTRE KAREEDAKEK ILKKLVGSSV 651 700 ENSP00000330031/1-882 LTKYNNKTYR VDDIDWKQNP EDTFNKSDGS KITYIDYYR- ---------- ENSBTAP00000020633/1-875 LTKYNNRTYR VDDIIWEMSP SSTFTKSDGS EISFVDYYK- ---------- bmy_17848T0/1-1127 LTKYNNRTYR VDDITWEKSP SSTFTRSDGS ETSFVDYYRE SYSLNLTKWT BACU008817/1-652 LTNHASVRFS VE-------- ---------- ---------- ---------- 701 750 ENSP00000330031/1-882 ---------- ---------- --QQHKEIVT VKKQPLLVSQ GRWKKGLTGT ENSBTAP00000020633/1-875 ---------- ---------- --ERYGTVVT TLNQPLLITK GKWKKSRQDT bmy_17848T0/1-1127 LFSFVYRCGF ANSHASVRFS VEQQYGTVVT TLSQPLLITK GKWKKSRQDT BACU008817/1-652 ---------- ---------- --QQYGTVVT TLSQPLLITK NKWKKSRQDT 751 800 ENSP00000330031/1-882 QREPILLIPQ LCHMTGLTDE ICKDYSIVKE LAKHTRLSPR RRHHTLKEFI ENSBTAP00000020633/1-875 PHQPIMLVPE LCHLTGLTDD MRKDYRMMRD LSTHTRMDPD RRQHKLLTFM bmy_17848T0/1-1127 LHQPIMLVPE LCHLTGLTDD LRKDYGMMRE LSTYMRMDP- -------VLE BACU008817/1-652 LRQPIMLVPE LCHLTGLTDD LRKDYRRMRE LSTYMRMDPG RRQRKLLTLM 801 850 ENSP00000330031/1-882 NTLQDNKKVR ELLQLWDLKF DTNFLSVPGR VLKNANIVQG RRMVKANSQG ENSBTAP00000020633/1-875 DALRKNNTVQ KELRDWNLEL EEGFLSFSGR TLQDVRIHQG RRMFD-NHKA bmy_17848T0/1-1127 EAKRGNNTVQ KELRDWNLEL ETEFLSFSGR TLQDVRIHQG RRTFD-NHNA BACU008817/1-652 DALRENNTVQ KELRDWNLEL EMEFLSFSGR TLQD------ ---------- 851 900 ENSP00000330031/1-882 DWSREIRELP LLNAMPLHSW LILYSRSSHR EAMSLKGHLQ SVTAPMGITM ENSBTAP00000020633/1-875 DWSKNTREAP LLRAMSLDHW LIVYTKGNYE TALTLQQNLQ RVTPKMGITV bmy_17848T0/1-1127 DWSRNTREVP VLRAMSLDHW LILYTKGNYG TALTFQQNLQ KFTPKMGIT- BACU008817/1-652 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000330031/1-882 KPAEMIEVDG DANSYIDTLR KYTRPTLQMG MSCLLVFKVI CILPNDDKRR ENSBTAP00000020633/1-875 RNAKLLEAAD TVQSYIRTLE KHASQKTQM- --------VL CLLPTDNKEI bmy_17848T0/1-1127 ---------- ---------- ---------- --------VL FLLPTENKEI BACU008817/1-652 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000330031/1-882 YDSIKRYLCT KCPIPSQCVV KKTLEKVQAR -TIVTKIAQQ MNCKMGGALW ENSBTAP00000020633/1-875 YDGIKRYLCI NYPIPSQCVL KRTLDRPKTP VTIATKIALQ MNCKLGGALW bmy_17848T0/1-1127 YDGIKRHLCV NYPIPSQCVL KXTLERPKTP LTIATKIALQ MNCKLGGALW BACU008817/1-652 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000330031/1-882 KVETDVQRTM FVGIDCFHDI VNRQKSIAGF VASTNAELTK WYSQCVIQ-K ENSBTAP00000020633/1-875 KVDIGLQNAM FIGIDCFHDI ERRRKSVAGF VASIDPDLTR WFSQCIIQ-E bmy_17848T0/1-1127 K----LQNAV FIGMDCFHGI VHRRKSVAGF VASIDPDLTW WVVLSMHHPA BACU008817/1-652 -----LQNAM FIGIDCFHGI VHQRKSVAGF VASIDPDLTQ DLLFSVRRVE 1051 1100 ENSP00000330031/1-882 TGEELVKEL- --EICLKAAL DVWCKNESSM PHSVIVYRDG VGDGQLQALL ENSBTAP00000020633/1-875 SGQELVKGL- --TTCLYTAL KLWSEQNSSP PRSIIVYRDG VGDGQLQALI bmy_17848T0/1-1127 IGAGA----- -------SAL KLWYEQNSSL LHSIIGYRDG VGDGQLQALI BACU008817/1-652 NKTHSADGFA YSSLVHYAAL KLWYEQNSSL PHSIIGYRDG VGEGQLQALI 1101 1150 ENSP00000330031/1-882 DHEAKKMSTY LKTISPNN-F TLAFIVVKKR INTRFFL-KH GSNFQNPPPG ENSBTAP00000020633/1-875 DQEVKQMESY LENSYRGQKV RLTFIVVKKR INTRFF---- --RQNGKPPF bmy_17848T0/1-1127 DQELKQMESY LENAYRGQSV RLTFIVVKKR INTRFFIEKY EGRLDNPSPG BACU008817/1-652 DQELKQMESY LENAYRGQ-- RLTFIVVKKR INTRFFIEKD EGRLDNPSPG 1151 1200 ENSP00000330031/1-882 TVIDVELTRN EWYDFFIVSQ SVQD--GTVT PTHYNVIYDT IGLSPDTVQR ENSBTAP00000020633/1-875 FILKVPFYLN KMYDFFIVSQ SVREGTGTVT PTHYNVIHDT LYLSPDAVQG bmy_17848T0/1-1127 TVIDLEVTRT EWYDFFIVSQ SVKEGTGTVT PTHYNVIHDT LYLSPDA--- BACU008817/1-652 TVIDLEVTRT ERYDFFIVSQ SVKEGTGTVT PTHYNVIHDT LYLSPDAVQS 1201 1250 ENSP00000330031/1-882 LTYCLCHMYY NLPGIIRVPA PCHYAHKLAY LVGQSIHQEP NRSLSTRLFY ENSBTAP00000020633/1-875 LTYRLCLFFF LLKGIIRVPA PCHYAHKLAY LVGQSLHQQP HESLSKSLFY bmy_17848T0/1-1127 ---------- ---GIIRVPA PCHYAHKLAY LVGQCLHQEP HESLSKRLFY BACU008817/1-652 QTYKLCHMYY NFSGIIRVPA PCHYAHKLAY LVGQSLHQEP HESLSKRLFY 1251 1300 ENSP00000330031/1-882 L ENSBTAP00000020633/1-875 L bmy_17848T0/1-1127 L BACU008817/1-652 L