KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:07 2014 Check: 00 .. Name: bmy_08856T0/1-637 Len: 1028 Check: 7698 Weight: 1.00 Name: ENSTTRP00000010621/1-973 Len: 1028 Check: 5540 Weight: 1.00 Name: ENSP00000324527/1-1006 Len: 1028 Check: 6254 Weight: 1.00 Name: ENSBTAP00000020634/1-1006 Len: 1028 Check: 6999 Weight: 1.00 Name: BACU013937/1-1007 Len: 1028 Check: 9989 Weight: 1.00 // 1 50 bmy_08856T0/1-637 --MWLSITYL KTSSGFLPTA HMAFLLITL- --LFEKGRIY TFIGEVVVSV ENSTTRP00000010621/1-973 ---------- ---------- ---------- ---FEKGRIY TFIGEVVVSV ENSP00000324527/1-1006 MAEQESLEFG KADFVLMDTV SMPEFMANLR L-RFEKGRIY TFIGEVVVSV ENSBTAP00000020634/1-1006 MAEQESLEFG KADFVLMDTV SMPEFMANLR L-RFEKGRIY TFIGEVVVSV BACU013937/1-1007 MAEQESLEFG KADFVLMDTV SMPEFMANLR LSRFEKGRIY TFIGEVVVSV 51 100 bmy_08856T0/1-637 NPYKLLNIYG RDTXEQYKGR ELYERPPHLF AIADAAYKAM KRRSKDTCIV ENSTTRP00000010621/1-973 NPYKLLNIYG RDTIEQYKGR ELYERPPHLF AIADAAYKAM KRRSKDTCIV ENSP00000324527/1-1006 NPYKLLNIYG RDTIEQYKGR ELYERPPHLF AIADAAYKAM KRRSKDTCIV ENSBTAP00000020634/1-1006 NPYKSLNIYG RDTIEQYKGR ELYERPPHLF AIADAAYKAM KRRSKDTCIV BACU013937/1-1007 NPYKLLNIYG RDTIEQYKGR ELYERPPHLF AIADAAYKAM KRRSKDTCIV 101 150 bmy_08856T0/1-637 ISGESGAGKT EASKYIMQYI AAITNPSQRA EIERVKNMLL KSNCVLEAFG ENSTTRP00000010621/1-973 ISGESGAGKT EASKYIMQYI AAITNPSQRA EIERVKNMLL KSNCVLEAFG ENSP00000324527/1-1006 ISGESGAGKT EASKYIMQYI AAITNPSQRA EVERVKNMLL KSNCVLEAFG ENSBTAP00000020634/1-1006 ISGESGAGKT EASKYIMQYI AAITNPSQRA EIERVKNMLL KSNCVLEAFG BACU013937/1-1007 ISGESGAGKT EASKYIMQYI AAITNPSQRA EIERVKNMLL KSNCVLEAFG 151 200 bmy_08856T0/1-637 NAKTNRNDNS SRFGKYMDIN FDFKGDPIGG HINNYLLE-- ---------- ENSTTRP00000010621/1-973 NAKTNRNDNS SRFGKYMDIN FDFKGDPIGG HINNYLLEKX XXXXXXXXXX ENSP00000324527/1-1006 NAKTNRNDNS SRFGKYMDIN FDFKGDPIGG HINNYLLEKS RVIVQQPGER ENSBTAP00000020634/1-1006 NAKTNRNDNS SRFGKYMDIN FDFKGDPIGG HINNYLLEKS RVIVQQPGER BACU013937/1-1007 NAKTNRNDNS SRFGKYMDIN FDFKGDPIGG HINNYLLEKS RVIVQQPGER 201 250 bmy_08856T0/1-637 ---------- ---------- ---------- --------KS SINDAAEFKV ENSTTRP00000010621/1-973 XXXXXXXLLQ GGSEQMLRSL HLQKSLSSYN YIHVGAQLKX XXXXXXXXXX ENSP00000324527/1-1006 SFHSFYQLLQ GGSEQMLRSL HLQKSLSSYN YIHVGAQLKS SINDAAEFRV ENSBTAP00000020634/1-1006 SFHSFYQLLQ GGSDQMLRSL HLQKSLSSYS YIHVGAQLKS SINDAAEFKV BACU013937/1-1007 SFHSFYQLLQ GGSEQMLRSL HLQKSLSSYN YIHVGAQLKS SINDAAEFKV 251 300 bmy_08856T0/1-637 VADAMKVIGF QPEEIQTVYK ILGAILHLGN LKFVVDGDVP LIENGRLVSI ENSTTRP00000010621/1-973 XXXXXXXXXX XXXXXXXXXX XXXXXXXXGN LKFVVDGDTP LIENGRLVSI ENSP00000324527/1-1006 VADAMKVIGF KPEEIQTVYK ILAAILHLGN LKFVVDGDTP LIENGKVVSI ENSBTAP00000020634/1-1006 VADAMKVIGF KPEEIQTAYK ILAAILHLGN LKFVVDGDTT LIEDGKLVSI BACU013937/1-1007 VADAMKVIGF QPEEIQTVYK ILGAILHLGN LKFVVDGDVP LLESGRLVSI 301 350 bmy_08856T0/1-637 IAELLSTKTD MVEKALLYRT VATGRD---- ---------- ------AIYE ENSTTRP00000010621/1-973 IAELLSTKTE MVEKALLYRT VATGRDIIDK QHTEQEASYG RDAFAKAIYE ENSP00000324527/1-1006 IAELLSTKTD MVEKALLYRT VATGRDIIDK QHTEQEASYG RDAFAKAIYE ENSBTAP00000020634/1-1006 IAELLSTKTD MVEKALLYRT VATGRDVIDK QHTEQEASYG RDAFAKAIYE BACU013937/1-1007 IAELLSTKTD MVEKALLYRT VATGRDVIDK QHTEQEASYG RDAFAKAIYE 351 400 bmy_08856T0/1-637 RLFCWIVSRI NDIIEVKNSD TTIHGKNTVI GVLDIYGFEI FDNNSFEQFC ENSTTRP00000010621/1-973 RLFCWIVSRI NDIIEVKNSD TTIHGKNTVI GVLDIYGFEI FDNNSFEQFC ENSP00000324527/1-1006 RLFCWIVTRI NDIIEVKNYD TTIHGKNTVI GVLDIYGFEI FDNNSFEQFC ENSBTAP00000020634/1-1006 RLFCWIVSRI NDIIAVKNSD TTIHGKNTVI GVLDIYGFEI FDNNSFEQFC BACU013937/1-1007 RLFCWIVSRI NDIIEVKNSD TTIHGKNTVI GVLDIYGFEI FDNNSFEQFC 401 450 bmy_08856T0/1-637 INYCNEKLQQ LFIQLVLKQE QEEYQREGIP WKHIDYFNNQ IIVDLVEQQH ENSTTRP00000010621/1-973 INYCNEKLQQ LFIQLVLKQE QEEYQREGIP WKHIDYFNNQ IIVDLVEQQH ENSP00000324527/1-1006 INYCNEKLQQ LFIQLVLKQE QEEYQREGIP WKHIDYFNNQ IIVDLVEQQH ENSBTAP00000020634/1-1006 INYCNEKLQQ LFIQLVLKQE QEEYQREGIP WKHIDYFNNQ IIVDLVEQQH BACU013937/1-1007 INYCNEKLQQ LFIQLVLKQE QEEYQREGIP WKHIDYFNNQ IIVDLVEQQH 451 500 bmy_08856T0/1-637 KGIIAILDDA CMNVGKVTDE MFLEALNSKL GKHGHFSSRK LCASDKILEF ENSTTRP00000010621/1-973 RGIIAILDDA CMNVGKVTDE MFLEALNSKL GKHGHFSSRK LCASDKILEF ENSP00000324527/1-1006 KGIIAILDDA CMNVGKVTDE MFLEALNSKL GKHAHFSSRK LCASDKILEF ENSBTAP00000020634/1-1006 KGIIAILDDA CMNVGKVTDE MFLEALNSKL GKHGHFSSRK LCASDKILEF BACU013937/1-1007 KGIIAILDDA CMNVGKVTDE MFLEALNSKL GKHGHFSSRK LCASDKILEF 501 550 bmy_08856T0/1-637 DRDFRIRHYA GDVVYSVVGF IDKNKDTLFQ DFKRLMYNSS NPVLKNMWPE ENSTTRP00000010621/1-973 DRDFRIRHYA GDVVYSVIGF IDKNKDTLFQ DFKRLMYNSS NPVLKNMWPE ENSP00000324527/1-1006 DRDFRIRHYA GDVVYSVIGF IDKNKDTLFQ DFKRLMYNSS NPVLKNMWPE ENSBTAP00000020634/1-1006 DRDFRIRHYA GDVVYSVVGF IDKNKDTLFQ DFKRLMYNSS NPVLKNMWPE BACU013937/1-1007 DRDFRIRHYA GDVVYSVVGF IDKNKDTLFQ DFKRLMYNSS NPVLKNMWPE 551 600 bmy_08856T0/1-637 GKLSITEVTK RPLTAATLFK NSMIALVDNL ASKVTTDKHN VLACIIKNPE ENSTTRP00000010621/1-973 GKLSITEVTK RPLTAATLFK NSMIALVDNL ASK------- ---------- ENSP00000324527/1-1006 GKLSITEVTK RPLTAATLFK NSMIALVDNL ASK------- ---------- ENSBTAP00000020634/1-1006 GKLSITEVTK RPLTAATLFK NSMIALVDNL ASK------- ---------- BACU013937/1-1007 GKLSITEVTK RPLTAATLFK NSMIALVDNL ASK------- ---------- 601 650 bmy_08856T0/1-637 RQGREPYYVR CIKPNDKKSP QIFDDERCRH QVEYLGLLEN VRVRRAGFAF ENSTTRP00000010621/1-973 ----EPYYVR CIKPNDKKSP QIFDDERCRH QVEYLGLLEN VRVRRAGFAF ENSP00000324527/1-1006 ----EPYYVR CIKPNDKKSP QIFDDERCRH QVEYLGLLEN VRVRRAGFAF ENSBTAP00000020634/1-1006 ----EPYYVR CIKPNDMKSP QIFDDERCRH QVEYLGLLEN VRVRRAGFAF BACU013937/1-1007 ----EPYYVR CIKPNDKKSP QIFDDERCRH QVEYLGLLEN VRVRRAGFAF 651 700 bmy_08856T0/1-637 RQTYEKFLHS ---------- ---------- ---------- ---------- ENSTTRP00000010621/1-973 RQTYEKFLHR YKMISEFTWP NHDLPSDKEA VKKLIKHCGF QDDVAYGKTK ENSP00000324527/1-1006 RQTYEKFLHR YKMISEFTWP NHDLPSDKEA VKKLIERCGF QDDVAYGKTK ENSBTAP00000020634/1-1006 RQTYEKFLHR YKMISEFTWP NHDLPSDKEA VKKLVEYCGF QDDVAYGKTK BACU013937/1-1007 RQTYEKFLHR YKMISEFTWP NHDLPSDKEA VKKLIKHCGF QDDVAYGKTK 701 750 bmy_08856T0/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010621/1-973 IFIRTPQTLF TLEELRAQML VRIVLFLQKV WRGTLARMRY KRTKAALTII ENSP00000324527/1-1006 IFIRTPRTLF TLEELRAQML IRIVLFLQKV WRGTLARMRY KRTKAALTII ENSBTAP00000020634/1-1006 IFIRTPRTLF TLEELRAQML VRIVLFLQKV WRGTLARMRY KRTKAALTII BACU013937/1-1007 IFIRTPQTLF TLEELRAQML VRIVLFLQKV WRGTLARMRY KRTKAALTII 751 800 bmy_08856T0/1-637 ---------- ---------- ---------- ---------- -CRSGSISAT ENSTTRP00000010621/1-973 RYYRRYKVKS YIHEVARRFH GIKTMRDHGK HVKWPAPPRV LCRFEAALQA ENSP00000324527/1-1006 RYYRRYKVKS YIHEVARRFH GVKTMRDYGK HVKWPSPPKV LRRFEEALQT ENSBTAP00000020634/1-1006 RYYRRYKVKS YIHEVARRFH GIKTMRDYGK HVQWPTPPKV LHRFEEVLQA BACU013937/1-1007 RYYRRYKVKS YIHEVSRRFH GIKTMRDHGK HVKWPAPPRV LYRFEEALQA 801 850 bmy_08856T0/1-637 VLE------- ---------- ---------- ---------- ---------- ENSTTRP00000010621/1-973 IFNRWRASQL IKTIPASDLP QVRAKVAAVE MLKGQRADLG LQRAWEGNYL ENSP00000324527/1-1006 IFNRWRASQL IKSIPASDLP QVRAKVAAVE MLKGQRADLG LQRAWEGNYL ENSBTAP00000020634/1-1006 VFNRWRASQL IKTIPASDLP QVRAKVAAVE MLKGQRADLG LQRAWEGNYL BACU013937/1-1007 IFNRWRASQL IKTIPASDLP QVRAKVAAVE MLKGQRADLG LQRAWEGNYL 851 900 bmy_08856T0/1-637 ---------- ---------- ---------- ---------- FTQLQHREVA ENSTTRP00000010621/1-973 ASKPDTPQTS GTFVPVANEL KRKDKYMNVL FSCHVRKVNR FSKVEDRAIF ENSP00000324527/1-1006 ASKPDTPQTS GTFVPVANEL KRKDKYMNVL FSCHVRKVNR FSKVEDRAIF ENSBTAP00000020634/1-1006 ASKPDTPQTS GTFVPVANEL KRKDKYMNVL FSCHVRKVNR FSKVEDRAIF BACU013937/1-1007 ASKPDTPQTS GTFVPVANEL KRKDKYMNVL FSCHVRKVNR FSKVEDRAIF 901 950 bmy_08856T0/1-637 IMARASNRLS NCN------- ---------- ---------- ---------- ENSTTRP00000010621/1-973 VTDRHLYKMD PTKQYKVMKT IPLYNLTGLS V-NGXXXXXX XXXXXXXXXX ENSP00000324527/1-1006 VTDRHLYKMD PTKQYKVMKT IPLYNLTGLS VSNGKDQLVV FHTKDNKDLI ENSBTAP00000020634/1-1006 VTDRHLYKMD PTKQYKVMKT IPLYNLTGLS VSNGKDQLVV FHTKDNKDLI BACU013937/1-1007 VTDRHLYKMD PTKQYKVMKT IPLYNLTGLS VSNGKDQLVV FHTKDNKDLI 951 1000 bmy_08856T0/1-637 ---------- ----GDIIGI LAK------- ---------- ---------- ENSTTRP00000010621/1-973 XXXXXXXXXX XXXXXXXXXX XXXXXXXEKR HLQVNVTNPV QCSLHGRKCT ENSP00000324527/1-1006 VCLFSKQPTH ESRIGELVGV LVNHFKSEKR HLQVNVTNPV QCSLHGKKCT ENSBTAP00000020634/1-1006 VCLFSKQPTH ESRIGELVGV LVNHFKSEKR HLQVNVTNPV QCSLHGKKCT BACU013937/1-1007 VCLFSKQPTH ESRIGELVGV LVNHFKSEKR HLQVNVTNPV QCSLHGKKCT 1001 1050 bmy_08856T0/1-637 -TQEAKVAT- ---------- -------- ENSTTRP00000010621/1-973 VSVETRLNQP QPDFTKNRSG FILSVPGN ENSP00000324527/1-1006 VSVETRLNQP QPDFTKNRSG FILSVPGN ENSBTAP00000020634/1-1006 VSVETRLNQP QPDFTKNRSG FILSVPGN BACU013937/1-1007 VSVETRLNQP QPDFTKNRSG FILSVPGN