KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:11 2014 Check: 00 .. Name: ENSTTRP00000010818/1-1510 Len: 1510 Check: 7808 Weight: 1.00 Name: ENSBTAP00000020651/1-1500 Len: 1510 Check: 111 Weight: 1.00 Name: ENSP00000385720/1-1499 Len: 1510 Check: 8022 Weight: 1.00 Name: BACU002145/1-1071 Len: 1510 Check: 2325 Weight: 1.00 Name: bmy_06594T0/1-1237 Len: 1510 Check: 8927 Weight: 1.00 // 1 50 ENSTTRP00000010818/1-1510 MMMARKQDVR IPTYNISVVG LSGTEKEKGQ CGIGKSCLCN RFVRPSADEF ENSBTAP00000020651/1-1500 MMMARKQDVR IPTYNISVVG LSGTEKEKGQ CGIGKSCLCN RFVRPSADEF ENSP00000385720/1-1499 MMMARKQDVR IPTYNISVVG LSGTEKEKGQ CGIGKSCLCN RFVRPSADEF BACU002145/1-1071 MMMARKQDVR IPTYNISVVG LSGTEKEKGQ CGIGKSCLCN RFVRPSADEF bmy_06594T0/1-1237 MMMARKQDVR IPTYNISVVG LSGTEKEKGQ CGIGKSCLCN RFVRPSADEF 51 100 ENSTTRP00000010818/1-1510 HLDHTSVLST SDFGGRVVNN DHFLYWGEVS RSLEDCVECK MHVVEQTEFI ENSBTAP00000020651/1-1500 HLDHTSVLST SDFGGRVVNN DHFLYWGEVG RSLEDCVECK MHVVEQTEFI ENSP00000385720/1-1499 HLDHTSVLST SDFGGRVVNN DHFLYWGEVS RSLEDCVECK MHIVEQTEFI BACU002145/1-1071 HLDHTSVLST SDFGGRVVNN DHFLYWGEVS RSLEDCVECK MHVVEQTEFI bmy_06594T0/1-1237 HLDHTSVLST SDFGGRVVNN DHFLYWGEVS RSLEDCVECK MHVVEQTEFI 101 150 ENSTTRP00000010818/1-1510 DDQTFQPHRS TALQPYIKRA AATKLASAEK LMYFCTDQLG LEQDFEQKQM ENSBTAP00000020651/1-1500 DDQTFQPHRS TTLQPYIKRA AATKLASAEK LMYFCTDQLG LEQDFEQKQM ENSP00000385720/1-1499 DDQTFQPHRS TALQPYIKRA AATKLASAEK LMYFCTDQLG LEQDFEQKQM BACU002145/1-1071 DDQTFQPHRS TALQPYIKRA AATKLASAEK LMYFCTDQLG LEQDFEQKQM bmy_06594T0/1-1237 DDQTFQPHRS TALQPYIKRA AATKLASAEK LMYFCTDQLG LEQDFEQKQM 151 200 ENSTTRP00000010818/1-1510 PDGKLLIDGF LLGIDVSRGM NRNFDDQLKF VSNLYNQLAK TKKPIVVVLT ENSBTAP00000020651/1-1500 PDGKLLIDGF LLGIDVSRGM NRNFDDQLKF VSNLYNQLAK TKKPIVVVLT ENSP00000385720/1-1499 PDGKLLVDGF LLGIDVSRGM NRNFDDQLKF VSNLYNQLAK TKKPIVVVLT BACU002145/1-1071 PDGKLLIDGF LLGIDVSRGM NRNFDDQLKF VSNLYNQLAK TKKPIVVVLT bmy_06594T0/1-1237 PDGKLLIDGF LLGIDVSRGM NRNFDDQLKF VSNLYNQLAK TKKPIVVVLT 201 250 ENSTTRP00000010818/1-1510 KCDEGVERYI RDAHTFALSK KNLQVVETSA RSNVNVDLAF STLVQLIDKS ENSBTAP00000020651/1-1500 KCDEGVERYI RDAHTFALSK KNLQVVETSA RSNVNVDLAF STLVQLIDKS ENSP00000385720/1-1499 KCDEGVERYI RDAHTFALSK KNLQVVETSA RSNVNVDLAF STLVQLIDKS BACU002145/1-1071 KCDEGVERYI RDAHTFALSK KNLQVVETSA RSNVNVDLAF STLVQLIDKS bmy_06594T0/1-1237 KCDEGVERYI RDAHTFALSK KNLQVVETSA RSNVNVDLAF STLVQLIDKS 251 300 ENSTTRP00000010818/1-1510 RGKTKIIPYF EALKQQSQQI ATAKDKYEWL VSRIVKNHNE NWLSVSRKMQ ENSBTAP00000020651/1-1500 RGKTKIIPYF EALKQQSQQI ATAKDKYEWL VSRIVKNHNE NWLSVSRKMQ ENSP00000385720/1-1499 RGKTKIIPYF EALKQQSQQI ATAKDKYEWL VSRIVKNHNE NWLSVSRKMQ BACU002145/1-1071 RGKTKIIPYF EALKQQSQQI ATAKDKYEWL VSRIVKNHNE NWLSVSRKMQ bmy_06594T0/1-1237 RGKTKIIPYF EALKQQSQQI ATAKDKYEWL VSRIVKNHNE NWLSVSRKMQ 301 350 ENSTTRP00000010818/1-1510 ASPEYQDYVY LEGTQKAKKL FLQHIHRLKH EHIERRRKLY LAALPLAFEA ENSBTAP00000020651/1-1500 ASPEYQDYVY LEGTQKAKKL FLQHIHRLKH EHIERRRKLY LAALPLAFEA ENSP00000385720/1-1499 ASPEYQDYVY LEGTQKAKKL FLQHIHRLKH EHIERRRKLY LAALPLAFEA BACU002145/1-1071 ASPEYQDYVY LEGTQKAKKL FLQHIHRLKH EHIERRRKLY LAALPLAFEA bmy_06594T0/1-1237 ASPEYQDYVY LEGTQKAKKL FLQHIHRLKH EHIERRRKLY LAALPLAFEA 351 400 ENSTTRP00000010818/1-1510 LIPNLDEIDH LSCIKAKKLL ETKPEFLKWF VVLEETPWDA TSHIDNIENE ENSBTAP00000020651/1-1500 LIPNLDEIDH LSCIKAKKLL ETKPEFLKWF VVLEETPWDA TSHIDNMENE ENSP00000385720/1-1499 LIPNLDEIDH LSCIKAKKLL ETKPEFLKWF VVLEETPWDA TSHIDNMENE BACU002145/1-1071 LIPNLDEIDH LSCIKAKKLL ETKPEFLKWF VVLEETPWDA TSHIDNIENE bmy_06594T0/1-1237 LIPNLDEIDH LSCIKAKKLL ETKPEFLKWF VVLEETPWDA TSHIDNIENE 401 450 ENSTTRP00000010818/1-1510 RIPFDLMDTV PAEQLYEAHL EKLRNERKRA EMRRAFKENL ETSPFITPGK ENSBTAP00000020651/1-1500 RIPFDLMDTV PAEQLYEAHL EKLRNERKRA EMRRAFKENL ETSPFITPGK ENSP00000385720/1-1499 RIPFDLMDTV PAEQLYEAHL EKLRNERKRV EMRRAFKENL ETSPFITPGK BACU002145/1-1071 RIPFDLMDTV PAEQLYEAHL EKLRNERKRA EMRRAFKENL ETSPFITPGK bmy_06594T0/1-1237 RIPFDLMDTV PAEQLYEAHL EKLRNERKRA EMRRAFKENL ETSPFITPGK 451 500 ENSTTRP00000010818/1-1510 PWEEARSFIM NEDFYQWLEE SVYLDIYGKH QKQIIDKAKE EFQELLLEYS ENSBTAP00000020651/1-1500 PWEEARSFIM NEDFYQWLEE SVYMDIYGKH QKQIIDKAKE EFQELLLEYS ENSP00000385720/1-1499 PWEEARSFIM NEDFYQWLEE SVYMDIYGKH QKQIIDKAKE EFQELLLEYS BACU002145/1-1071 PWEEARSFIM NEDFYQWLEE SVYMDIYGKH QKQIIDKAKE EFQELLLEYS bmy_06594T0/1-1237 PWEEARSFIM NEDFYQWLEE SVYMDIYGKH QKQIIDKAKE EFQELLLEYS 501 550 ENSTTRP00000010818/1-1510 ELFYELELDA KPSKEKMGVI QDVLGEEQRF KALQKLQAER DALILKHIHF ENSBTAP00000020651/1-1500 ELFYELELDA KPSKEKMGVI QDVLGEEQRF KALQKLQAER DALILKHIHF ENSP00000385720/1-1499 ELFYELELDA KPSKEKMGVI QDVLGEEQRF KALQKLQAER DALILKHIHF BACU002145/1-1071 ELFYELELDA KPSKEKMGVI QDVLGEEQRF KALQKLQAER DALILKHIHF bmy_06594T0/1-1237 ELFYELELDA KPSKEKMGVI QDVLGEEQRF KALQKLQAER DALILKHIHF 551 600 ENSTTRP00000010818/1-1510 VYHPTKETCP SCPACVDAKI EHLISSRFIR PSDRNQKNSL SDPNIDRINL ENSBTAP00000020651/1-1500 VYHPTKETCP SCPSCVDAKI EHLVSSRFIR PSDRNQKNSL SDPNIDRINL ENSP00000385720/1-1499 VYHPTKETCP SCPACVDAKI EHLISSRFIR PSDRNQKNSL SDPNIDRINL BACU002145/1-1071 VYHPTKETCP SCPACVDAKI EHLISSRFIR PSDRNQKNSL SDPNIDRINL bmy_06594T0/1-1237 VYHPTKETCP SCPACVDAKI EHLISSRFIR PSDRNQKNSL SDPNIDRINL 601 650 ENSTTRP00000010818/1-1510 VILGKDGLAR ELANEIRALC TNDDKYVIDG KMYELSLRPI EGXXXXXXXX ENSBTAP00000020651/1-1500 VILGKDGLAR ELANEIRALC TNDDKYVIDG KMYELSLRPI EGNVRLPVNS ENSP00000385720/1-1499 VILGKDGLAR ELANEIRALC TNDDKYVIDG KMYELSLRPI EGNVRLPVNS BACU002145/1-1071 VILGKDGLAR ELANEIRALC TNDDKYVID- ---------- ---------- bmy_06594T0/1-1237 VILGKDGLAR ELANEIRALC TNDDKYVIDG KMYELSLRPI EGNVRLPVNS 651 700 ENSTTRP00000010818/1-1510 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020651/1-1500 FQTPTFQPHG CLCLYNSKES LSYVVESIEK SRESTLGRRD NHLAHLPLTL ENSP00000385720/1-1499 FQTPTFQPHG CLCLYNSKES LSYVVESIEK SRESTLGRRD NHLVHLPLTL BACU002145/1-1071 ---------- ---------- ---------- ---------- ---------- bmy_06594T0/1-1237 FQTPTFQPHG CLCLYNSKES LSYVVESIEK SRESTLGRRD NHLVHLPLTL 701 750 ENSTTRP00000010818/1-1510 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020651/1-1500 ILVNKRGDTS GETLHSLIQQ GQQIASKLQC VFLDPASAGI GYGRNINEKQ ENSP00000385720/1-1499 ILVNKRGDTS GETLHSLIQQ GQQIASKLQC VFLDPASAGI GYGRNINEKQ BACU002145/1-1071 ---------- ---------- ---------- ---------- ---------- bmy_06594T0/1-1237 ILVNKRGDTS GETLHSLIQQ GQQIASKLQC VFLDPASAGI GYGRNINEKQ 751 800 ENSTTRP00000010818/1-1510 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020651/1-1500 ISQVLKGLLD SKRNLNLVSS TASIKDLADV DLRIVMCLMC GDPFSADDIL ENSP00000385720/1-1499 ISQVLKGLLD SKRNLNLVSS TASIKDLADV DLRIVMCLMC GDPFSADDIL BACU002145/1-1071 ---------- ---------- ---------- ---------- ---------- bmy_06594T0/1-1237 ISQVLKGLLD SKRNLNLVSS TASIKDLADV DLRIVMCLMC GDPFSADDIL 801 850 ENSTTRP00000010818/1-1510 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020651/1-1500 FPVLQSQTCK SSHCGSNNSV LLELPIGLHK KRIELSILSY HSSFSVRKSR ENSP00000385720/1-1499 FPVLQSQTCK SSHCGSNNSV LLELPIGLHK KRIELSVLSY HSSFSIRKSR BACU002145/1-1071 ---------- ---------- ---------- ---------- ---------- bmy_06594T0/1-1237 FPVLQSQTCK SSHCGSSNSV LLELPIGLHK KRIELSLLSY HSSFSIRKSR 851 900 ENSTTRP00000010818/1-1510 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020651/1-1500 LVHGYIVFYS AKRKASLAML RAFLCEVQDI IPVQLVALTD GAIDVLDNDL ENSP00000385720/1-1499 LVHGYIVFYS AKRKASLAML RAFLCEVQDI IPIQLVALTD GAVDVLDNDL BACU002145/1-1071 ---------- ---------- ------VQDI IPIQLVALTD GAVDVLDNDV bmy_06594T0/1-1237 LVHGYIVFYS AKRKASLAML RAFLCEVQDI IPIQLVALTD GAVDVLDNDV 901 950 ENSTTRP00000010818/1-1510 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXPFFKD VVDKKNIIEA ENSBTAP00000020651/1-1500 SREQLTEGEE IAQEIDGRFT SIPCSQPQHK LEIFHPFFKD VVDKKNIIEA ENSP00000385720/1-1499 SREQLTEGEE IAQEIDGRFT SIPCSQPQHK LEIFHPFFKD VVEKKNIIEA BACU002145/1-1071 SREQLTEGEE IAQEIDGKFT SIPCSQPQHK LELFHPFFKD VVDKKNIIEA bmy_06594T0/1-1237 SREQLTEGEE IAQEIDGKFT SIPCSQPQHK LELFHPFFKD VVDKKNIIEA 951 1000 ENSTTRP00000010818/1-1510 THMYDNAAEA CSTTEEVFNS PRAGSPLCNS NLQDSEEDIE PTSYTLFRED ENSBTAP00000020651/1-1500 THMYDNAAEA CSTTEEVFNS PRAGSPLCNS NLQDSEEDIE TPSYSMFRED ENSP00000385720/1-1499 THMYDNAAEA CSTTEEVFNS PRAGSPLCNS NLQDSEEDIE P-SYSLFRED BACU002145/1-1071 THMYDNAAEA CSTTEEVFNS PRAGSPLCNS NLQDSEEDIE PPSYSLFRED bmy_06594T0/1-1237 THMYDNAAEA CSTTEEVFNS PRAGSPLCNS NLQDSEEDIE PPSYSLFRED 1001 1050 ENSTTRP00000010818/1-1510 TSLPSLSKDH SKLSMELEGN DGLSFIMSNF ESKLNNKVPP PVKPKPPVHF ENSBTAP00000020651/1-1500 TPLPSLSKDH SKLSMELEGN DGLSFIMSNF ESKLNNKVPP PVRPKPPVHF ENSP00000385720/1-1499 TSLPSLSKDH SKLSMELEGN DGLSFIMSNF ESKLNNKVPP PVKPKPPVHF BACU002145/1-1071 TSLPSLSKDH SKLSMELEGN DGLSFIMSNF ESKLNNKVPP PVKPKPPVHF bmy_06594T0/1-1237 TSLPSLSKDH SKLSMELEGN DGLSFIMSNF ESKLNNKVPP PVKPKPPVHF 1051 1100 ENSTTRP00000010818/1-1510 EITKGDLSYL DQGHRDGQRK SVSSSTWLPP DGFDPSDYAE PMDAVVKPRN ENSBTAP00000020651/1-1500 EITKGDLSYL DQGHRDAQRK SVSSSTWLPP DGFDPSDYAE PMDAVVKPRN ENSP00000385720/1-1499 EITKGDLSYL DQGHRDGQRK SVSSSPWLPQ DGFDPSDYAE PMDAVVKPRN BACU002145/1-1071 EITKGDLSYL DQGHRDGQRK SVSSSTWLPP DGFDPSDYAE PMDAVVKPRN bmy_06594T0/1-1237 EITKGDLSYL DPGHRDGQRK SVSSSAWLPP DGFDPSDYAE PMDAVVKPRN 1101 1150 ENSTTRP00000010818/1-1510 EEENIYSVPH DSTQGKIITI RNINKAQSNG SGNGSDSEMD TSSLERGRKV ENSBTAP00000020651/1-1500 EEENIYSVPH DSTQGKIITI RNINKAQSNG SGNGSDSEMD TSSLERGRKV ENSP00000385720/1-1499 EEENIYSVPH DSTQGKIITI RNINKAQSNG SGNGSDSEMD TSSLERGRKV BACU002145/1-1071 EEENIYSVPH DSTQGKIITI RNINKAQSNG SGNGSDSEMD TSSLERGRKV bmy_06594T0/1-1237 EEENIYSVPH DSTQGKIITI RNINKAQSNG SGNGSDSEMD TSSLERGRKV 1151 1200 ENSTTRP00000010818/1-1510 SIVSKPVLYR TRCSRLGRFA SYRTSFTVGS DDELGPIRKK EEDQASQGYK ENSBTAP00000020651/1-1500 SMVSKPVLYR TRCSRLGRFA SYRTSFSVGS DDELGPIRKK EEDQASQGYK ENSP00000385720/1-1499 SIVSKPVLYR TRCTRLGRFA SYRTSFSVGS DDELGPIRKK EEDQASQGYK BACU002145/1-1071 SIVSKPVLYR TRCSRLGRFA SYRTSFTVGS DDELGPIRKK EEDQASQGYK bmy_06594T0/1-1237 SIVSKPVLYR TRCSRLGRFA SYRTSFTVGS DDELGPIRKK EEDQASQGYK 1201 1250 ENSTTRP00000010818/1-1510 GDSAVIPYET DEDPRRRNIL RSLRRNTKKP KPKPRPSITK ATWESNYFGV ENSBTAP00000020651/1-1500 GDNAVIPYET DEDPRRRNIL RSLRRNTKKP KPKPRPSITK ATWESTYFGV ENSP00000385720/1-1499 GDNAVIPYET DEDPRRRNIL RSLRRNTKKP KPKPRPSITK ATWESNYFGV BACU002145/1-1071 GDSAVIPYET DEDPRRRNIL RSLRRNTKKP KPKPRPSITK ATWESNYFGV bmy_06594T0/1-1237 GDSAVIPYET DEDPRRRNIL RSLRRNTK-- ---------- ---------- 1251 1300 ENSTTRP00000010818/1-1510 PLTTVVTPEK PIPVFIERCI EYIEATGLST EGIYRVSGNK SEMESLQRQF ENSBTAP00000020651/1-1500 PLTTVVTPEK PIPVFIERCI EYIEATGLST EGIYRVSGNK SEMESLQRQF ENSP00000385720/1-1499 PLTTVVTPEK PIPIFIERCI EYIEATGLST EGIYRVSGNK SEMESLQRQF BACU002145/1-1071 PLTTVVSPEK PIPVFIERCI EYIEATGHFL EA-------- ---------- bmy_06594T0/1-1237 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000010818/1-1510 DQDHNLDLAE KDFTVNTVAG AMKSFFSELP DPLVPYNMQM DLVEAHKIND ENSBTAP00000020651/1-1500 DQDHNLDLAE KDFTVNTVAG AMKSFFSELP DPLVPYNMQI DLVEAHKIND ENSP00000385720/1-1499 DQDHNLDLAE KDFTVNTVAG AMKSFFSELP DPLVPYNMQI DLVEAHKIND BACU002145/1-1071 ---------- ---------- ---------- ---------- ------KPSG bmy_06594T0/1-1237 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSTTRP00000010818/1-1510 REQKLHALKE VLKRFPKENH EVFKYVISHL NKVSHNNKVN LMTSENLSIC ENSBTAP00000020651/1-1500 REQKLHALKE VLKKFPKENH EVFKYVISHL NKVSHNNKVN LMTSENLSIC ENSP00000385720/1-1499 REQKLHALKE VLKKFPKENH EVFKYVISHL NKVSHNNKVN LMTSENLSIC BACU002145/1-1071 GSGIISCFRE MLS------- ---------- ---------- ---------- bmy_06594T0/1-1237 ---VRHEFRN EL-------- ---------- ---------- ---------- 1401 1450 ENSTTRP00000010818/1-1510 FWPTLMRPDF STMDALTATR TYQTIIELFI QQCPFFFHNR PISEPPGATP ENSBTAP00000020651/1-1500 FWPTLMRPDF STMDALTATR TYQTIIELFI QQCPFFFHNR PISEPPGATP ENSP00000385720/1-1499 FWPTLMRPDF STMDALTATR TYQTIIELFI QQCPFFFYNR PITEPPGARP BACU002145/1-1071 ---------- ---------- ---------- --------GK ELSNPNSCQT bmy_06594T0/1-1237 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSTTRP00000010818/1-1510 SSPSALASTV PFLTSTPVTS QPSPPQSPPP TPQSPMQPLL PSPLPPHAPP ENSBTAP00000020651/1-1500 SSPSALASTV PFLTSTPITS QPSPPQSPPP TPQSPMQPLL PSQLQAEHTL ENSP00000385720/1-1499 SSPSAVASTV PFLTSTPVTS QPSPPQSPPP TPQSPMQPLL PSQLQAEHTL BACU002145/1-1071 CGSSIFM--- ---------- ---------- ---------- ---------- bmy_06594T0/1-1237 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSTTRP00000010818/1-1510 PSRYVPFKEH ENSBTAP00000020651/1-1500 ---------- ENSP00000385720/1-1499 ---------- BACU002145/1-1071 ---------- bmy_06594T0/1-1237 ----------