KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:16 2014 Check: 00 .. Name: ENSTTRP00000003730/1-1525 Len: 1599 Check: 9172 Weight: 1.00 Name: ENSP00000276297/1-1528 Len: 1599 Check: 985 Weight: 1.00 Name: ENSBTAP00000020664/1-1112 Len: 1599 Check: 6908 Weight: 1.00 Name: bmy_11632T0/1-1028 Len: 1599 Check: 3570 Weight: 1.00 Name: BACU005199/1-1007 Len: 1599 Check: 6235 Weight: 1.00 // 1 50 ENSTTRP00000003730/1-1525 MSVAIRKRSW EEHVTQWMGQ PFNSDDCNTA CHHGLVADSL QASMEKDATL ENSP00000276297/1-1528 MSVAIRKRSW EEHVTHWMGQ PFNSDDRNTA CHHGLVADSL QASMEKDATL ENSBTAP00000020664/1-1112 MARPLRAPLR RSFSDH---- ---------- ---------- ---------- bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003730/1-1525 NVDRKERCVS LPDCCHGSEL RDIPGRPMGH ISKEVDEDDS HEGEDQFLSL ENSP00000276297/1-1528 NVDRKEKCVS LPDCCHGSEL RDFPGRPMGH LSKDVDENDS HEGEDQFLSL ENSBTAP00000020664/1-1112 ---------- ---------- ---------- ---------- ---------- bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000003730/1-1525 EASTETLVHV SDEDTDSDLY LTDDKQILTT QGPKTSDQHS IKGAGSLVKT ENSP00000276297/1-1528 EASTETLVHV SDEDNNADLC LTDDKQVLNT QGQKTSGQHM IQGAGSLEKA ENSBTAP00000020664/1-1112 ---------- ---------- ---------- ---------- ---------- bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000003730/1-1525 LPIMESNQGS YDSWGMAGGA DLVLVEEKGD RKVVDMMSKS LELCKDISLS ENSP00000276297/1-1528 LPIIQSNQVS SNSWGIAGET ELALVKESGE RKVTDSISKS LELCNEISLS ENSBTAP00000020664/1-1112 ---------- ---------- ---------- ---------- ---------- bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000003730/1-1525 EIKDASKMNA CDSLNVKDIV PEKQLLNSAV MQHRRK---P LRKDHERNTC ENSP00000276297/1-1528 EIKDAPKVNA VDTLNVKDIA PEKQLLNSAV IAQQRRKPDP PKDENERSTC ENSBTAP00000020664/1-1112 ---------- ---------- ---------- ---------- ---------- bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000003730/1-1525 SAVQDEFLAI PCADRGLPLL KTDSGSCLLQ PPSCPSGMSA ENGLEKSGFS ENSP00000276297/1-1528 NVVQNEFLDT PCTNRGLPLL KTDFGSCLLQ PPSCPNGMSA ENGLEKSGFS ENSBTAP00000020664/1-1112 ---------- ---------- ---------- ---------- ---------- bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000003730/1-1525 EHQNRSLPKV NSGDGMQCLH IKETLATHEP TDNQVRLRKR KEIREDRDRV ENSP00000276297/1-1528 QHQNKSPPKV KAEDGMQCLQ LKETLATQEP TDNQVRLRKR KEIREDRDRA ENSBTAP00000020664/1-1112 ---------- ---------- ---------- ---------- ---------- bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000003730/1-1525 RLDSMLLLIM KLDQLDQDIE NALSTSSSPS STPTNLRRQV PDLESGSESG ENSP00000276297/1-1528 RLDSMVLLIM KLDQLDQDIE NALSTSSSPS GTPTNLRRHV PDLESGSESG ENSBTAP00000020664/1-1112 ---------- ---------- ---------- ---------- ---------- bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000003730/1-1525 ADNTSVNQXX XXXXXXXXXX XXXXXXXXXX FGTQPKFMAI PGTSEKEKAE ENSP00000276297/1-1528 ADTISVNQTR VNLSSDTEST DLPSSTPVAN SGTKPKTTAI QGISEKEKAE ENSBTAP00000020664/1-1112 ---------- ---------- -------IRD STARALDVIW KNTRDRRLAE bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000003730/1-1525 IEAKEACDWL RAAGFPQYAQ LYEDLLFPID ISLVKREHDF LDRDAIEALC ENSP00000276297/1-1528 IEAKEACDWL RATGFPQYAQ LYEDFLFPID ISLVKREHDF LDRDAIEALC ENSBTAP00000020664/1-1112 IEAKEACDWL RAAGFPQYAQ LYEDLLFPID ISSVKREHDF LDRDAIEALC bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000003730/1-1525 RRLNTLNKCA VMKLEISPHR KRSEDSDEDE PCAISAKWTF QRDSKRWSRL ENSP00000276297/1-1528 RRLNTLNKCA VMKLEISPHR KRSDDSDEDE PCAISGKWTF QRDSKRWSRL ENSBTAP00000020664/1-1112 RRLNTLNKCA VMKLEISPHR KRSEDSDEDE PCAISGKWTF QRDSKRWSRL bmy_11632T0/1-1028 ---------- -MKLEISPHR KRSEDSDEDE PCAISAKWTF QRDSKRWSRL BACU005199/1-1007 ---------- ---------- -QSEDSDEDE PCAISAKWTF QRDSKRWSRL 551 600 ENSTTRP00000003730/1-1525 EEFDVFSPKQ DPIPGSPDDP HLKSAPSRES VLTDLSERQE VASVRSLSST ENSP00000276297/1-1528 EEFDVFSPKQ DLVPGSPDDS HPKDGPSPGG TLMDLSERQE VSSVRSLSST ENSBTAP00000020664/1-1112 EEFDVFSPKQ DPIPGSPDAV HLKSAPSHEN MQTDLSDRQE VASVH---ST bmy_11632T0/1-1028 EEFDVFSPKQ DPVPGSPDDP HLKNAPSRES VLTDLSERQE VASVRSLSST BACU005199/1-1007 EEFDVFSPKQ DPVPGSPDDP HLKNAPSRES VLTDLSERQE VASVRSLSST 601 650 ENSTTRP00000003730/1-1525 SSLATQATHL GGAATARTNS VTSVCSSGTF VGNDDSFCSL PS-KELSSFS ENSP00000276297/1-1528 GSLPSHAPPS EDAATPRTNS VISVCSSSNL AGNDDSFGSL PSPKELSSFS ENSBTAP00000020664/1-1112 GSLTTHAPQR GEAAPARTNS VLSVCSSGTF VGNDDSFCSL PSPKELSSFS bmy_11632T0/1-1028 SSLATQATQL GGAATARTNS VTSVCSSGTF VGNDDSFCSL PSPKELSSFS BACU005199/1-1007 SSLATQATHL GGAATARTNS VTSVCSSGTF VGNDDSFCSL PSPKELSSFS 651 700 ENSTTRP00000003730/1-1525 FSVKGQEKNT KSKTHSLLKR MESLKLRGSH HSKHKVPSKL GLIISGPILQ ENSP00000276297/1-1528 FSMKGHEKTA KSKTRSLLKR MESLKLKSSH HSKHKAPSKL GLIISGPILQ ENSBTAP00000020664/1-1112 FSMKGHEKTA KSKTHSLLKR MESLKLKGSH HSKHKAPSKL GLIISGPILQ bmy_11632T0/1-1028 FSVKGHEKNT KSKTHSLLKR MESLKLKGSH HSKHKVPSKL GLIISGPILQ BACU005199/1-1007 FSVKGHEKNT KSKTHSLLKR MESLKLKGSH HSKHKVPSKL GLIISGPVLQ 701 750 ENSTTRP00000003730/1-1525 EGVDEEKLKQ LNCVEISALN GNRINVPAVR KRSVSNSTQT SSSSSQSETS ENSP00000276297/1-1528 EGMDEEKLKQ LNCVEISALN GNRINVPMVR KRSVSNSTQT SSSSSQSETS ENSBTAP00000020664/1-1112 EGVDEEKLKQ LNCVEISALN GNHINVPMVR KRSISSSTQT SSSSSQSETS bmy_11632T0/1-1028 EGVDEEKLKQ LNCVEISALN GNRINVPAVR KRSVSNSTQT SSSSSQSETS BACU005199/1-1007 EGVDEEKLKQ LNCVEISALN GNRINVPAVR KRSVSNSTQT SSSSSQSETS 751 800 ENSTTRP00000003730/1-1525 SNVSTPSPVT RTRSLSACNK RGGMYLEGFD PFNQSTFNNV MEQNFKNCES ENSP00000276297/1-1528 SAVSTPSPVT RTRSLSACNK RVGMYLEGFD PFNQSTFNNV VEQNFKNRES ENSBTAP00000020664/1-1112 SNVSTPSPVT RTRSLSACNK RGGMYLEGFD PFNQSTFNNV MEQNCKNRES bmy_11632T0/1-1028 SNVSTPSPVT RTRSLSACNK RGGMYLEGFD PFNQSTFNNV MEQNFKNCES BACU005199/1-1007 SNVSTPSPVT RTRSLSACNK RGGMYLEGFD PFNQSTFNNV MEQNFKNCES 801 850 ENSTTRP00000003730/1-1525 YPEDAVFYIP EDHKPGTFPK ALSNGNFSPS GNSSSVNWRT GSFHGPGHXX ENSP00000276297/1-1528 YPEDTVFYIP EDHKPGTFPK ALTNGSFSPS GNNGSVNWRT GSFHGPGHIS ENSBTAP00000020664/1-1112 YPEDTVFYIP EDHKPGTFPK ALSNGSFSPS GNNSSVNWRT GSFHGPGHIS bmy_11632T0/1-1028 YPEDAVFYIP EDHKPGTFPK ALSNGNFSPS GNNSSVNWRT GSFHGPGHIS BACU005199/1-1007 YPEDAVFYIP EDHKPGTFPK ALSNGSFSPS GNNSSVNWRT GSFHGPGHIS 851 900 ENSTTRP00000003730/1-1525 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000276297/1-1528 LRRENSSDSP KELKRRNSSS SMSSRLSIYD NVPGSILYSS SGDLADLENE ENSBTAP00000020664/1-1112 LRRENS--SP KELKRRNSSS SVSSRLSIYD NVPGSILYSS SGDLADLENE bmy_11632T0/1-1028 LRREDSSDSP KELKRRNSSS SMTSRLSIYD NVPGSILYSS SGDLADLENE BACU005199/1-1007 LRREDSSDSP KELKRRNSSS SMTSRLSIYD NVPGSILYSS SGDLADLENE 901 950 ENSTTRP00000003730/1-1525 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000276297/1-1528 DIFPELDDIL YHVKGMQRIV NQWSEKFSDE GDSDSALDSV SP-CPSSPKQ ENSBTAP00000020664/1-1112 DIFPELDDIL YHVKGMQRIV NQWSEKFSDE GDSDSALDSV SP-CPSSPKQ bmy_11632T0/1-1028 DIFPELDDIL YHVKGMQRIV NQWSEKFSDE GDSDSALDSV SP-CPSSPKQ BACU005199/1-1007 DIFPELDDIL YHVKGMQRIV NQWSEKFSDE GDSDSALDSV SP-CPSSPKQ 951 1000 ENSTTRP00000003730/1-1525 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXHR ENSP00000276297/1-1528 IHLDVDNDRT TPSDLDSTGN SLNEPEEPSE IPERRDSGVG ASLTRSNRHR ENSBTAP00000020664/1-1112 IHLDVDNDRA TPSDLDSTGN SLNEPEEPSD IPERRDSGVG ASLTRSNRHR bmy_11632T0/1-1028 IHLDVDNDRA TPSDLDSTGN SLNEPEEPSD IPERRDSGVG ASLTRSSR-- BACU005199/1-1007 IHLDVDNDRA TPSDLDSTGN SLNEPEEPSD IPERRDSGVG ASLTRSSRHR 1001 1050 ENSTTRP00000003730/1-1525 LRWHSFQSSH RPSLNSVSLQ INCQSVAQMN LLQKYSLLKL TALLEKYTPS ENSP00000276297/1-1528 LRWHSFQSSH RPSLNSVSLQ INCQSVAQMN LLQKYSLLKL TALLEKYTPS ENSBTAP00000020664/1-1112 LRWHSFQSSH RPSLNSVSLQ INCQSVAQMN LLQKYSLLKL TALLEKYTPS bmy_11632T0/1-1028 ---------- ---------- ---------- ---------- ---------- BACU005199/1-1007 LRWHSFQSSH RPSLNSVSLQ INCQSVAQMN LLQKYSLLKL TALLEKYTPS 1051 1100 ENSTTRP00000003730/1-1525 NKHGFSWAVP KFMKRIKVPD YKDRHVFGVP LTVNVQRTGQ PLPQSIQQAM ENSP00000276297/1-1528 NKHGFSWAVP KFMKRIKVPD YKDRSVFGVP LTVNVQRTGQ PLPQSIQQAM ENSBTAP00000020664/1-1112 NKHGFSWAVP KFMKRIKVPD YKDRNVFGVP LTVNVQRTGQ PLPQSIQQAM bmy_11632T0/1-1028 -------AVP KFMKRIKVPD YKDRHVFGVP LTVNVQRTGQ PLPQSIQQAM BACU005199/1-1007 NKHGFSWAVP KFMKRIKVPD YKDRHVFGVP LTVNVQRTGQ PLPQSIQQAM 1101 1150 ENSTTRP00000003730/1-1525 RYLRNHCLDQ VGLFRKSGVK SRIQALRQMN ESTIDCVNYE GQSAYDVADM ENSP00000276297/1-1528 RYLRNHCLDQ VGLFRKSGVK SRIQALRQMN EGAIDCVNYE GQSAYDVADM ENSBTAP00000020664/1-1112 RYLRNHCLDQ VGLFRKSGVK SRIQALRQMN ESTIDCVNYE GQSAYDVADM bmy_11632T0/1-1028 RYLRNHCLDQ VGLFRKSGVK SRIQALRQMN ESAIDCVNYE GQSAYDVADM BACU005199/1-1007 RYLRNHCLDQ VGLFRKSGVK SRIQALRQMN ESAIDCVNYE GQSAYDVADM 1151 1200 ENSTTRP00000003730/1-1525 LKQYFRDLPE PLMTNKLSET FLQIYQYVPK DQRLQAIKAA IMLLPDENRE ENSP00000276297/1-1528 LKQYFRDLPE PLMTNKLSET FLQIYQYVPK DQRLQAIKAA IMLLPDENRE ENSBTAP00000020664/1-1112 LKQYFRDLPE PLMTNKLSET FLQIYQYVPK DQRLQAIKAA IMLLPDENRE bmy_11632T0/1-1028 LKQYFRDLPE PLMTNKLSET FLQIYQYVPK DQRLQAIKAA IMLLPDENRE BACU005199/1-1007 LKQYFRDLPE PLMTNKLSET FLQIYQYVPK DQRLQAIKAA IMLLPDENRE 1201 1250 ENSTTRP00000003730/1-1525 VLQTLLYFLS DVTAAVKENQ MTPTNLAVCL APSLFHLNTL KRENSSPRVM ENSP00000276297/1-1528 VLQTLLYFLS DVTAAVKENQ MTPTNLAVCL APSLFHLNTL KRENSSPRVM ENSBTAP00000020664/1-1112 VLQTLLYFLS DVTAAVKENQ MTPTNLAVCL APSLFHLNTL KRENSSPRVM bmy_11632T0/1-1028 VLQTLLYFLS DVTAAVKENQ MTPTNLAVCL APSLFHLNTL KRENSSPRVM BACU005199/1-1007 VLQTLLYFLS DVTAAVKENQ MTPTNLAVCL APSLFHLNTL KRENSSPRVM 1251 1300 ENSTTRP00000003730/1-1525 QRKQSLGKPD QKDLNENLAA TQGLAHMIAE CKKLFQVPEE MSRCRNSYTE ENSP00000276297/1-1528 QRKQSLGKPD QKDLNENLAA TQGLAHMIAE CKKLFQVPEE MSRCRNSYTE ENSBTAP00000020664/1-1112 QRKQSLGKPD QKDLNENLAA TQGLAHMIAE CKKLFQVPEE MSRCRNSYTE bmy_11632T0/1-1028 QRKQSLGKPD QKDLNENLAA TQGLAHMIAE CKKLFQVPEE MSRCRNSYTE BACU005199/1-1007 QRKQSLGKPD QKDLNENLAA TQGLAHMIAE CKKLFQVPEE MSRCRNSYTE 1301 1350 ENSTTRP00000003730/1-1525 QELKPLTLEA LGRLCNDESA SYQHFLQDCV DSLFKEVKEK FKGWVSYSTS ENSP00000276297/1-1528 QELKPLTLEA LGHLGNDDSA DYQHFLQDCV DGLFKEVKEK FKGWVSYSTS ENSBTAP00000020664/1-1112 QELKPLTLEA LGRLCNDDSA DYQHFLQDCV DSLFKEVKEK FKGWVSYSTS bmy_11632T0/1-1028 QELKPLTLEA LGRLCNDESA NYQHFLQDCV DSLFKEVKEK FKGWVSYSTS BACU005199/1-1007 QELKPLTLEA LGRLCNDESA NYQHFLQDCV DSLFKEVKEK FKGWVSYSTS 1351 1400 ENSTTRP00000003730/1-1525 EQAELSYKKV SEGPPLRLWR ATIEVPASPE EILKRLLKEQ HLWDVDLLDS ENSP00000276297/1-1528 EQAELSYKKV SEGPPLRLWR SVIEVPAVPE EILKRLLKEQ HLWDVDLLDS ENSBTAP00000020664/1-1112 EQAELFYKKV SEGPPLRLWR ATIEVPATPE EILKRLLKEQ HLWDVDLLDS bmy_11632T0/1-1028 EQAELSYKKV SEGPPLRLWR ATIEVPASPE EILKRLLREQ HLWDVDLLDS BACU005199/1-1007 EQAELSYKKV SEGPPLRLWR ATIEVPASPE EILKRLLREQ HLWDVDLLDS 1401 1450 ENSTTRP00000003730/1-1525 KVIEILDSRT EIYQYVQNSM APHPARDYVV LRTWRTNLPK GACALLLTSV ENSP00000276297/1-1528 KVIEILDSQT EIYQYVQNSM APHPARDYVV LRTWRTNLPK GACALLLTSV ENSBTAP00000020664/1-1112 KVIEILDSQT EIYQYVQNSM APHPARDYVV LRTWRTNLPK GACALLLTSV bmy_11632T0/1-1028 KVIEILDSQT EIYQYVQNSM APHPARDYVV LRTWRTNLPK GACALVLTSV BACU005199/1-1007 KVIEILDSQT EIYQYVQNSM APHPARDYVV LRTWRTNLPK GACALVLTSV 1451 1500 ENSTTRP00000003730/1-1525 DHDRAPVVRV RVNVLLARYL IEPCGSGKSK LTYMCRADLR GHMPEWYTKS ENSP00000276297/1-1528 DHDRAPVVGV RVNVLLSRYL IEPCGPGKSK LTYMCRVDLR GHMPEWYTKS ENSBTAP00000020664/1-1112 DHDRAPVVGV RVNVLLARYL IEPCGSGKSK LTYMCRADLR GHMPEWYTKS bmy_11632T0/1-1028 DHDRAPVVGV RVNVLLARYL IEPCGSGKSK LTYMCRADLR GHMPEWYTKS BACU005199/1-1007 DHDRAPVVGV RVNVLLARYL IEPCGSGKSK LTYMCRADLR GHMPEWYTKS 1501 1550 ENSTTRP00000003730/1-1525 FGHLCAAEVV KIRDSFSNQS TETKDTKSR- ---------- ---------- ENSP00000276297/1-1528 FGHLCAAEVV KIRDSFSNQN TETKDTKSR- ---------- ---------- ENSBTAP00000020664/1-1112 FGHLCAAEVV KIRDSFSHQN TETKDTKSR- ---------- ---------- bmy_11632T0/1-1028 FGHLCAAEVV KIRDSFSNQN TETKDTKSRS VLWTLTGIYD CAKKKKKSIP BACU005199/1-1007 FGHLCAAEVV KIRDSFSNQN TETKDTKSR- ---------- ---------- 1551 1600 ENSTTRP00000003730/1-1525 ---------- ---------- ---------- ---------- --------- ENSP00000276297/1-1528 ---------- ---------- ---------- ---------- --------- ENSBTAP00000020664/1-1112 ---------- ---------- ---------- ---------- --------- bmy_11632T0/1-1028 IRIASEKQSY KYIREDNEET SLSCDVGVCV RVPMSFSLQC VEGLVYPLE BACU005199/1-1007 ---------- ---------- ---------- ---------- ---------