KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:18 2014 Check: 00 .. Name: ENSP00000290291/1-677 Len: 696 Check: 7226 Weight: 1.00 Name: ENSBTAP00000020676/1-534 Len: 696 Check: 6080 Weight: 1.00 Name: BACU011251/1-594 Len: 696 Check: 6387 Weight: 1.00 Name: ENSTTRP00000001669/1-532 Len: 696 Check: 7762 Weight: 1.00 Name: bmy_16426T0/1-482 Len: 696 Check: 8010 Weight: 1.00 // 1 50 ENSP00000290291/1-677 MDDPDCDSTW EEDEEDAEDA EDEDCEDGEA AGARDADAGD EDEESEEPRA ENSBTAP00000020676/1-534 MEDSDCDSTW DEDEEENGEG PRAEAGEDGE T------GAL GNAEAEE--D BACU011251/1-594 ---------- ---------- --MGAPWGGP CLLAALRSGE GLLGGV---S ENSTTRP00000001669/1-532 MEDPDCDSTW EEDEEEDGEG PRAGADEDGE A------GAP GDVEAE---R bmy_16426T0/1-482 ---------- ---------- ------MGGE S--------- ---------- 51 100 ENSP00000290291/1-677 ARPSSFQSRM TGSRNWRATR DMCRYRHNYP DLVERDCNGD TPNLSFYRNE ENSBTAP00000020676/1-534 APPSALQLKV TGSRNWRAAR DTRRYRHHYP DLVEGDDNGD MLNLSFYKNE BACU011251/1-594 SSLLSFQLKV TGSRNWRAVR DTRRYRHHYP DLVEGDGNGD MPNLSFYKNE ENSTTRP00000001669/1-532 TRPSAFQLKV TGSRNWRAAR DTRRYRHHYP DLVEGDASGD MPNLSFYKNE bmy_16426T0/1-482 ----EARLKV TGSRNWRAVR DTRRYRHHYP DLVEEDGNGD MPNLSFYKNE 101 150 ENSP00000290291/1-677 IRFLPNGCFI EDILQNWTDN YDLLEDNHSY IQWLFPLREP GVNWHAKPLT ENSBTAP00000020676/1-534 IRFLPNGLFI EDILQNWKDD YD-SGGHHSY IQWLFPLREP GVNWHAKPLT BACU011251/1-594 IRFLPNGCFI EDILQNWKEE YDLLEDNHSY IQWLFPLREP GVNCHAKPLT ENSTTRP00000001669/1-532 IRFLPNGCFI EDILQNWKEE YGLLEDNHSY IQWLFPLREP GVNCHAKPLT bmy_16426T0/1-482 IRFLPNGCFI EDILQNWKEE YDLLEDNHSY IQWLFPLREP GVNCHAKPLT 151 200 ENSP00000290291/1-677 LREVEVFKSS QEIQERLVRA YELMLGFYGI RLEDRGTGTV GRAQNYQKRF ENSBTAP00000020676/1-534 LQEIEAFKKS AEVRKRLVQA YELMLGFFGI QLQDRDTGQV CRAHNYQKRF BACU011251/1-594 LQEVQAFKSS TEVRKRLVQA YELMLGFFGI QLKDRDTGRV CRAQNYQKRF ENSTTRP00000001669/1-532 LQEVEAFKSS TEARKRLVQA YELMLGFFGI QLTDRDTGRV CRAQNYQKRF bmy_16426T0/1-482 LQEVEAFKSS TEVRKRLVQA YELMLGFFGI QLKDRDTGRV ---------- 201 250 ENSP00000290291/1-677 QNLNWRSHNN LRITRILKSL GELGLEHFQA PLVRFFLEET LVRRELPGVR ENSBTAP00000020676/1-534 QNLNWHSHNN LRITRILKSL GELGLAHYQA PLARFFLEET LVRRQLPGLR BACU011251/1-594 QNLNWHSHNN LRITRILKSL GELGLEHYQA PLARFFLEET LVRRQLPGVR ENSTTRP00000001669/1-532 QNLSWHSHNN LRITRILKSL GELGLEHYQA PLARFFLEET LVRRQLPGVR bmy_16426T0/1-482 -----HSHNN LRITRILKSL GELGLEHYQA PLARFFLEET LVRRQLPGIR 251 300 ENSP00000290291/1-677 QSALDYFMFA VRCRHQRRQL VHFAWEHFRP RCKFVWGPQD KLRRFKPSSL ENSBTAP00000020676/1-534 HSALDYFVFT VRCRHQRREL LRFAWEHFRP RYRFVWGPQD KLQKFKPCSP BACU011251/1-594 HSALDYFVFT VRCRHQRREL LYFAWEHFRP RYRFVWGPHD KLQKFRPCSP ENSTTRP00000001669/1-532 QSALDYFVFT VRCRHQRREL LYFAWEHFRP RCRFVWGPHD KLQKFRPCSP bmy_16426T0/1-482 HSALDYFVFT VRCRHQRREL LYFAWEHFRP RYRFVWGPHD KLQKFRPCSP 301 350 ENSP00000290291/1-677 PHP--LEGSR KVEEEGSPGD PDHEASTQGR TCGPEHSKGG GRVDEGPQPR ENSBTAP00000020676/1-534 PCSSRLACPR QAKEEESPGE PPLEASTQRH TCGLGKDEEA GPLAEGPQLP BACU011251/1-594 PCSPRPARPR QADGEESPGD PLLEAGAQGQ TCGPWRHEEG DPVAQGPQPP ENSTTRP00000001669/1-532 PCSPRPARPR QANGEESPGE PLLEAAAQGQ TCGPGRDEEG DPVAKGPQPP bmy_16426T0/1-482 PCSPRPARPR QADGEESPGD PLLEAGAQGQ TCGPGRHEEG DPVAQGPQPP 351 400 ENSP00000290291/1-677 SVEPQDAGPL ERSQGDEAGG HGEDRPEPLS PKESKKRKLE LSRREQPPTE ENSBTAP00000020676/1-534 GTESQEVRAL ERDQGDETS- -EEQGPESPN PKESKKRKLE ANLRERALGE BACU011251/1-594 GTEPQEAGAL EKDQGDEAG- -EEQGPESPN PKESKKRKLE ANLRERAPGE ENSTTRP00000001669/1-532 GTGPQEAGAS EKDQGDEAG- -DEQGPESPN PKERKKRKLE ANLRARAPGE bmy_16426T0/1-482 GTEPQEAGAL EKDQGDEAG- -EEQGPESPN PKESKKRKLE ANLRERAPGE 401 450 ENSP00000290291/1-677 PGPQSASEVE KIALNLEGCA LSQGSLRTGT QEVGGQDPGE AVQPCRQPLG ENSBTAP00000020676/1-534 PGA-SASEVE KIALNLEGCA LSQGSLRVET QEVVSQAPEE AKQPCPQPPG BACU011251/1-594 PGP-SASEVE KIALNLEGCA LSQGSLGAET QEVGSQAPEE AEQPCPQPLE ENSTTRP00000001669/1-532 PGP-SASEVE KIALNLEGCA LSQGSLGAET QEVGSQAPEE AEQPRPQPLE bmy_16426T0/1-482 PGP-SASEVE KIALNLEGCA LSQGSLGAET QEVGSQAPEE AEQPCPQPLE 451 500 ENSP00000290291/1-677 ARVADK---- ---VRKRRKV DEGAGDSAAV AS-GGAQTLA LA-------- ENSBTAP00000020676/1-534 AKVADE---- ---VRKRRKM DQGASDHPEA AADGGTLTLA TT-------- BACU011251/1-594 AKVADEGAQW LKRVKMGSKK KQMARQGRSG VP-PGAQPLQ DPRWMRGLRG ENSTTRP00000001669/1-532 AKVADD---- ---VRKRRKT EQVAR----- ---DGTVTLA AA-------- bmy_16426T0/1-482 AKVADE---- ---VRKRRKT DQGARDGTGV AAGDGTLTLA TT-------- 501 550 ENSP00000290291/1-677 GSPAPSGHPK AGHSENGVEE DTEGRTGPKE GTPGSPSETP GPSPAGPAGD ENSBTAP00000020676/1-534 KPPAPSECSE AEEGANGIKE ETEGQAGLGQ SAPGSPGT-- ---------- BACU011251/1-594 QSPRRQG-PL SSPERLG-EG DARGPALPCR -RPGSRVASC SQRPALR--- ENSTTRP00000001669/1-532 QPPAPSGRPV AEEGENGVKE EAGGPVGPEQ GAPGSPAT-- ---------- bmy_16426T0/1-482 QPPAPSGCPV AEEGENGVKE EAGGQAGPEQ GAPGSPAT-- ---------- 551 600 ENSP00000290291/1-677 EPAESPSETP GPRPAGPAGD EPAESPSETP GPRPAGPAGD EPAESPSETP ENSBTAP00000020676/1-534 ---------- ---------- ---------- ----AAPEVE E-------RA BACU011251/1-594 ---------- ---------- ---------- ----ASPCWS LQPLLQLLAG ENSTTRP00000001669/1-532 ---------- ---------- ---------- ----AGPEVD ---------G bmy_16426T0/1-482 ---------- ---------- ---------- ----AGPEVD ERAE----RA 601 650 ENSP00000290291/1-677 GPSPAGPTRD EPAESPSET- PGPRPAGPAG DEPAESPSET PGPRPAGPAG ENSBTAP00000020676/1-534 EPTEVG---- -----PCVH- PG-------- ---------- ---------- BACU011251/1-594 QVPPLGEARA SAPFFPRPHF PP-------- ---------- ---------- ENSTTRP00000001669/1-532 QSPEAG---- -----PSVE- PE-------- ---------- ---------- bmy_16426T0/1-482 EPTEAG---- -----PSVQ- PG-------- ---------- ---------- 651 700 ENSP00000290291/1-677 DEPAESPSET PGPSPAGPTR DEPAKAGEAA ELQDAEVESS AKSGKP ENSBTAP00000020676/1-534 -----EP--- ---------- ---------- ---------- ------ BACU011251/1-594 -----LSSSV PLPAPHLCNL APHGLGGGRG DHFLSLAQRP FLNKLI ENSTTRP00000001669/1-532 -----SPRET PGPCP----- ---------- ---------- ------ bmy_16426T0/1-482 -----EP--- ---------- ---------- ---------- ------