KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:21 2014 Check: 00 .. Name: ENSTTRP00000001680/1-683 Len: 723 Check: 2977 Weight: 1.00 Name: bmy_16425T0/1-592 Len: 723 Check: 8052 Weight: 1.00 Name: ENSP00000341640/1-684 Len: 723 Check: 3301 Weight: 1.00 Name: BACU011250/1-392 Len: 723 Check: 3557 Weight: 1.00 Name: ENSBTAP00000020699/1-689 Len: 723 Check: 4640 Weight: 1.00 // 1 50 ENSTTRP00000001680/1-683 ---------- ---------- ---------- ---MAGP--L WLLLLGQLLA bmy_16425T0/1-592 GRELASSPPP APPAEPSSGH RHPAGCTQSA CAAMAGAPAL ALLLLGRLLA ENSP00000341640/1-684 ---------- ---------- ---------M AGPRACAPLL LLLLLGELLA BACU011250/1-392 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020699/1-689 ---------- ---------- ---------- ---MAGAPTL ALLLLGQLLA 51 100 ENSTTRP00000001680/1-683 ATVTVTGAQK VGPRGPPGPR GPPGKPGKDG IDGEVGPPGL PGPLGPKGAP bmy_16425T0/1-592 ATVTVTEAQK VGPRGPPGPR GPPGKPGKDG IDGEVGPPGL PGPLGPKGAP ENSP00000341640/1-684 A----AGAQR VGLPGPPGPP GPPGKPGQDG IDGEAGPPGL PGPPGPKGAP BACU011250/1-392 ---------- -----MSGLV GEPGMPGKDG RDGVLG---- ---------- ENSBTAP00000020699/1-689 ATVILTEAQK VGPRGPPGPQ GPPGKPGKDG IDGEVGPPGL PGPVGPKGAP 101 150 ENSTTRP00000001680/1-683 GKPGKPGEAG MPGLPGVDGL TGHDGPPGPK GAPGERGSLG PPGPPGLGGK bmy_16425T0/1-592 GKPGKPGEAG LPGLPGVDGL TGQDGPPGPK GAPGERG--- ---------- ENSP00000341640/1-684 GKPGKPGEAG LPGLPGVDGL TGRDGPPGPK GAPGERGSLG PPGPPGLGGK BACU011250/1-392 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020699/1-689 GKPGKPGEAG LPGLPGVDGL TGQDGPPGPK GAPGERGSLG PPGPPGLGGK 151 200 ENSTTRP00000001680/1-683 GLPGPPAETG SRRTGPGGTG LCCSAGPSGL PGLPGPPGPP GPPGRPGVLP bmy_16425T0/1-592 -------EAG VSGV-PGGIG LR-------- ---------- GPLGRPGVLP ENSP00000341640/1-684 GLPGPPGEAG VSGP-PGGIG LRGPPGPSGL PGLPGPPGPP GPPGHPGVLP BACU011250/1-392 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020699/1-689 GLPGPPGEAG VSGL-PGGIG LRGPPGPSGL PGLPGPPGPP GPPGHPGVLP 201 250 ENSTTRP00000001680/1-683 EGVTDLQCPA ICPPGPPGPP GMPGFKGPTG YKGEQGEVGK DGEKGDPGPP bmy_16425T0/1-592 EGATDLQCPA ICPPGPPGPP GMPGFKGPTG YKGEQGEVGK DGEKGDPGPP ENSP00000341640/1-684 EGATDLQCPS ICPPGPPGPP GMPGFKGPTG YKGEQGEVGK DGEKGDPGPP BACU011250/1-392 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020699/1-689 EGATDLQCPA ICPPGPPGPP GMPGFKGPTG YKGEPGEVGK DGEKVEAGRG 251 300 ENSTTRP00000001680/1-683 GPPGIPGTVG LQGPRGLQGF PGPLGPPGDR GPIGFRGPPG IPGAPGKVGD bmy_16425T0/1-592 GPPGIPGTVG LQGPRGLRGF PGPLGPPGDR GPIGFRGPPG IPGAPGKVGD ENSP00000341640/1-684 GPAGLPGSVG LQGPRGLRGL PGPLGPPGDR GPIGFRGPPG IPGAPGKAGD BACU011250/1-392 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020699/1-689 VEPGRGPALS LQGPRGLRGL SGPLGPPGDR GPIGFRGPPG IPGAPGKAGD 301 350 ENSTTRP00000001680/1-683 ----RGERGP EGLRGPKGDL GRPGPKGVPG MSGLVGEPGM PGKDGRDGVL bmy_16425T0/1-592 ----RGERGP EGLRGPKGDL ---------- ---------- ---------- ENSP00000341640/1-684 ----RGERGP EGFRGPKGDL GRPGPKGTPG VAGPSGEPGM PGKDGQNGVP BACU011250/1-392 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020699/1-689 EWPGRGQRTT DVHQEALGCE GRPGPKGIPG MSGPSGEPGM PGKDGQDGVP 351 400 ENSTTRP00000001680/1-683 GLDGEKGEAG RNGAPGEKGP NGLPGLPGRA GSKGEKGEPX XXXXXXXXXX bmy_16425T0/1-592 ------GEAG RNGAPGEKGP NGLP------ ---------- ---------- ENSP00000341640/1-684 GLDGQKGEAG RNGAPGEKGP NGLPGLPGRA GSKGEKGERG RAGELGEAGP BACU011250/1-392 -LDGEKGEAG RNGAPGEKGP NGLPGLPGRA GSKGEKGELG RAGELGEAGP ENSBTAP00000020699/1-689 GLDGEKGEAG RHGAPGEKGP NGLPGLPGRA GSKGEKGELG RPGELGEAGP 401 450 ENSTTRP00000001680/1-683 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16425T0/1-592 ---------- ---------- -----GALGP QGPPGAPGVR GFQGRKGSMG ENSP00000341640/1-684 SGEPGVPGDA GMPGERGEAG HRGSAGALGP QGPPGAPGVR GFQGQKGSMG BACU011250/1-392 SGEPGVPGDA GVSGERGEAG HRGSAGALGP QGPPGAPGVR GYQGRKGSMG ENSBTAP00000020699/1-689 SGEPGVPGDV GMPGERGEAG HRGSAGALGP QGPPGAPGVR GFQGRKGSIG 451 500 ENSTTRP00000001680/1-683 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG IAGADGLPGD KGELGPSGPV bmy_16425T0/1-592 DPGLPGPQGL RGGVGERGPG GAAGPKGDQG IAGADGLPGD KGELGPSGPV ENSP00000341640/1-684 DPGLPGPQGL RGDVGDRGPG GAAGPKGDQG IAGSDGLPGD KGELGPSGLV BACU011250/1-392 DPSLPGPQGL RGGVGDRGPG GAAGPKGDQG TAGADGLPGD KGELGPSGPV ENSBTAP00000020699/1-689 DPGLPGPQGL RGGVGDRGPG GAAGPKGDQG IAGADGLPGD KGELGPSGPV 501 550 ENSTTRP00000001680/1-683 GPKGESGSRG ELGPKGIQGP NGTGGIDGVP GHPGPMGLQG VRGVPGITGK bmy_16425T0/1-592 GPKGESGSRG ELGPKGIQGP NGTSGVDGVP GHPGPMGLQG VRGVPGVTGK ENSP00000341640/1-684 GPKGESGSRG ELGPKGTQGP NGTSGVQGVP GPPGPLGLQG VPGVPGITGK BACU011250/1-392 GPKGESGSRG ELGPKGIQGP NGTSGVDGVP GHPGPMGLQG VRGVPGITGK ENSBTAP00000020699/1-689 GPKGESGSRG ELGPKGIQGP NGTSGVDGVP GPPGPVGLQG VRGVPGITGK 551 600 ENSTTRP00000001680/1-683 PGVPGKEASE QHIRELCVGM VS-EQIAQLA AHLRKPLAPG SIGRPGPAGP bmy_16425T0/1-592 PGVPGQEASE QRVRELCGGM VS-EQIAQLA AHLRKPLAPG SIGRPGPAGP ENSP00000341640/1-684 PGVPGKEASE QRIRELCGGM IS-EQIAQLA AHLRKPLAPG SIGRPGPAGP BACU011250/1-392 PGVPGKEASE QHVRELCGGM VS-EQITQLA AHLRKPLAPG SIGRPGPAGP ENSBTAP00000020699/1-689 PGVPGKEASE QHIRELCGGL VSEEQIAQLA AHLRKPLAPG SIGRPGPAGP 601 650 ENSTTRP00000001680/1-683 PGPPGPPGSI GHPGARGPPG YRGPTGELGD PGPRGNQGDR GDKGPAGEGL bmy_16425T0/1-592 PGPPGPPGSI GHPGARGPPG YRGPTGELGD PGPRGNQGDR GDKGSAGEGL ENSP00000341640/1-684 PGPPGPPGSI GHPGARGPPG YRGPTGELGD PGPRGNQGDR GDKGAAGAGL BACU011250/1-392 PGPPGPPGSI GHPGARGPPG YRGPTGELGD PGPRGNQGDR GDKGSAGEGL ENSBTAP00000020699/1-689 PGPPGPPGSI GHPGARGPPG YRGPTGELGD PGPRGNQGDR GDKGSAGEGL 651 700 ENSTTRP00000001680/1-683 DGPDGDQGLQ GPQGVPGVGK DGRDGAHGEP GLPGDPGLPG AVGAQGTPGI bmy_16425T0/1-592 DGPDGDQGLQ GPQGVPGVSK DGRDGAHGEP GLPGDPGLPG AVGAQGTPGI ENSP00000341640/1-684 DGPEGDQGPQ GPQGVPGTSK DGQDGAPGEP GPPGDPGLPG AIGAQGTPGI BACU011250/1-392 DGPDGDQGLQ GPQGVPGVSK DGRDGAHGEP GLPGDPGLPG AVGAQGTPGI ENSBTAP00000020699/1-689 DGPDGDQGLQ GPQGVPGISK DGRDGAHGEP GLPGDPGLPG AVGAQGPPGI 701 750 ENSTTRP00000001680/1-683 CDTSACQGAV MGGGGEKSGS RSS bmy_16425T0/1-592 CDTSACQGAV MGGGGDKSGP RSS ENSP00000341640/1-684 CDTSACQGAV LGGVGEKSGS RSS BACU011250/1-392 CDTSACQGAV MGVGGDKSGP RSS ENSBTAP00000020699/1-689 CDTSACQGAV MAAVGEKSGP RSS