KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:22 2014 Check: 00 .. Name: ENSP00000374455/1-440 Len: 487 Check: 164 Weight: 1.00 Name: ENSBTAP00000020709/1-440 Len: 487 Check: 9106 Weight: 1.00 Name: ENSTTRP00000004172/1-440 Len: 487 Check: 163 Weight: 1.00 Name: bmy_03354T0/1-480 Len: 487 Check: 7352 Weight: 1.00 Name: BACU002909/1-440 Len: 487 Check: 2090 Weight: 1.00 // 1 50 ENSP00000374455/1-440 MASLTVKAYL LGKEDAAREI RRFSFCCSPE PEAEAEAAAG PGPCERLLSR ENSBTAP00000020709/1-440 MASLTVKAYL LGKEDAAREI RRFSFCFSPE PEAEAEAAPG PRPCERLLNR ENSTTRP00000004172/1-440 MASLTVKAYL LGKEDAAREI RRFSFCFSAE PEAEAESTAG PRPCERLLSR bmy_03354T0/1-480 MASLTVKAYL LGKEDAAREI RRFSFCFSPE PEAEAESTAG SRPCERLLSR BACU002909/1-440 MASLTVKAYL LGKEDAAREI RRFSFCFSPE PEAEAESTAG SRPCERLLSR 51 100 ENSP00000374455/1-440 VAALFPALRP GGFQAHYRDE DGDLVAFSSD EELTMAMSYV KDDIFRIYIK ENSBTAP00000020709/1-440 VAALFPVLRP GGFQAHYRDE DGDLVAFSSD EELTMAMSYV KDDIFRIYIK ENSTTRP00000004172/1-440 VAALFPVLRP GGFQAHYRDE DGDLVAFSSD EELKMAMSYV KDDIFRIYIK bmy_03354T0/1-480 VAALFPVLRP GGFQAHYRDE DGDLVAFSSD EELKMAMSYV KDDIFRIYIK BACU002909/1-440 VAALFPVLRP GGFQAHYRDE DGDLVAFSSD EELKMAMSYV KDDIFRIYIK 101 150 ENSP00000374455/1-440 EKKECRRDHR PPCAQEAPRN MVHPNVICDG CNGPVVGTRY KCSVCPDYDL ENSBTAP00000020709/1-440 EKKECRRDQR PSCAQEVPRN MVHPNVICDG CNGPVVGTRY KCSVCPDYDL ENSTTRP00000004172/1-440 EKKECRRDHR PPCAQEVPRN MVHPNVICDG CNGPVVGTRY KCSVCPDYDL bmy_03354T0/1-480 EKKECRRDHR PLCAQEVPRN MVHPNVICDG CNGPVVGTRY KCSVCPDYDL BACU002909/1-440 EKKECRRDHR PPCAQEVPRN MVHPNVICDG CNGPVVGTRY KCSVCPDYDL 151 200 ENSP00000374455/1-440 CSVCEGKGLH RGHTKLAFPS PFGHLSEGFS HSRWLRKVKH GHFGWPGWEM ENSBTAP00000020709/1-440 CSACEGKGLH REHGKLAFPS PIGHFSEGFS HSRWLRKLKH GHFGWPAWEM ENSTTRP00000004172/1-440 CSVCEGKGMH REHSKLAFPS PFGRPSEGFS HSRWLRKLKH GHFGWPGWEM bmy_03354T0/1-480 CSVCEGKGMH REHSKLAFPS PFGHPSEGFS HSRWLRKLKH GHFGWPGWEM BACU002909/1-440 CSVCEGKGMH REHSKLAFPS PFGHPSEGFS HSRWLRKLKH GHFGWPGWEM 201 250 ENSP00000374455/1-440 GPPGNWSPRP PRAGEARPGP TAESASGPSE DPSVNFLKNV GESVAAALSP ENSBTAP00000020709/1-440 GTPGNWSPRP PQAGDAHPGP ATESASGPSE DPSVNFLKNV GESVAAALSP ENSTTRP00000004172/1-440 GPPGNWSPRP PRAGDAHPGP AAESASGPSE DPSVNFLKNV GESVAAALSP bmy_03354T0/1-480 GPPGNWSPRP PRVGDAHPGP AAESASGPSE DPSVNFLKNV GESVAAALSP BACU002909/1-440 GPPGNWSPRP PRVGDAHPGP AAESASGPSE DPSVNFLKNV GESVAAALSP 251 300 ENSP00000374455/1-440 LGIEVDIDVE HGGKRSRLTP VSPESSSTEE KSSSQPSSCC SDPSKPGGNV ENSBTAP00000020709/1-440 LGIEVDIDVE HGGKRSRLTP TSAGSSSTEE KCSSQPSSCC SDPSKPDRDV ENSTTRP00000004172/1-440 LGIEVDIDVE HGGKRSRLTP TSPGSSTPEE KCSSQTSSCC SNPSKPDGDV bmy_03354T0/1-480 LGIEVDIDVE HGGKRSRLTP TSPGSSSPEE KCSSQPSSCC SNPSKPDGDV BACU002909/1-440 LGIEVDIDVE HGGKRSRLTP TSPGSSSPEE KCSSQPSSCC SNPSKPDGDV 301 350 ENSP00000374455/1-440 EGATQSLAEQ MRKIALESEG RPE------- ---------- ---------- ENSBTAP00000020709/1-440 EGTAQSLTEQ MNKIALESGG QHE------- ---------- ---------- ENSTTRP00000004172/1-440 EGMAQSLVEQ VNKIALESGG QPE------- ---------- ---------- bmy_03354T0/1-480 EGMAQSLVEQ VNKITLESGG QPEASTLPRH PQVVAAQSFS QHPKHSPSLA BACU002909/1-440 EGMAQSLVEQ VNKITLESGG QPE------- ---------- ---------- 351 400 ENSP00000374455/1-440 ---------- ---------- EQMESDNCSG GDDDWTHLSS KEVDPSTGEL ENSBTAP00000020709/1-440 ---------- ---------- EQMESDNCSG GDDDWTHLSS KEVDPSTGEL ENSTTRP00000004172/1-440 ---------- ---------- EQMESDNCSG GDDDWTHLSS KEVDPSTGEL bmy_03354T0/1-480 LTQPEGPISV AGCRRHLSCS EQMESDNCSG GDDDWTHLSS KEVDPSTGEL BACU002909/1-440 ---------- ---------- EQMESDNCSG GDDDWTHLSS KEVDPSTGEL 401 450 ENSP00000374455/1-440 QSLQMPESEG PSSLDPSQEG PTGLKEAALY PHLPPEADPR LIESLSQMLS ENSBTAP00000020709/1-440 QSLQMPESEG PSSLDPSQEG PTGLKEAALY PHLPPEADPR LIESLSQMLS ENSTTRP00000004172/1-440 QSLQMPESEG PSSLDPSQEG PTGLKEAALY PHLPPEADPR LIESLSQMLS bmy_03354T0/1-480 QSLQMPESEG PSSLDPSQEG PTGLKEAALY PHLPP--GKR F-----QMLS BACU002909/1-440 QSLQMPESEG PSSLDPSQEG PTGLKEAALY PHLPPEADPR LIESLSQMLS 451 500 ENSP00000374455/1-440 MGFSDEGGWL TRLLQTKNYD IGAALDTIQY SKHPPPL ENSBTAP00000020709/1-440 MGFSDEGGWL TRLLQTKNYD IGAALDTIQY SKHPPPL ENSTTRP00000004172/1-440 MGFSDEGGWL TRLLQTKDYD IGAALDTIQY SKHPPPL bmy_03354T0/1-480 MGFSDEGGWL TRLLQTKDYD IGAALDTIQY SKHPPPL BACU002909/1-440 MGFSDEGGWL TRLLQTKDYD IGAALDTIQY SKHPPPL