KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:23 2014 Check: 00 .. Name: BACU015863/1-988 Len: 991 Check: 1262 Weight: 1.00 Name: ENSP00000349458/1-632 Len: 991 Check: 335 Weight: 1.00 Name: ENSTTRP00000014450/1-537 Len: 991 Check: 7747 Weight: 1.00 Name: ENSBTAP00000020711/1-628 Len: 991 Check: 7014 Weight: 1.00 Name: bmy_03093T0/1-590 Len: 991 Check: 8126 Weight: 1.00 // 1 50 BACU015863/1-988 MNRYTTIKQL GDGTYGSVLL GRSIESGELI AIKKMKRKFY SWEECMNLRE ENSP00000349458/1-632 MNRYTTIRQL GDGTYGSVLL GRSIESGELI AIKKMKRKFY SWEECMNLRE ENSTTRP00000014450/1-537 MNRYTTIKQL GDGTYGSVLL GRSIESGELI AIKXXXXXXX XXXXXXXXXX ENSBTAP00000020711/1-628 MNRYTTIKQL GDGTYGSVLL GRSIESGELI AIKKMKRKFY SWEECMNLRE bmy_03093T0/1-590 MNRYTTIKQL GDGTYGSVLL GRSIESGELI AIKKMKRKFY SWEECMNLRE 51 100 BACU015863/1-988 VKSLKKLNHA NVVKLKEVIR ENDHLYFIFE YMKENLYQLI KERNKLFPES ENSP00000349458/1-632 VKSLKKLNHA NVVKLKEVIR ENDHLYFIFE YMKENLYQLI KERNKLFPES ENSTTRP00000014450/1-537 XXXXXXXXXA NVVKLKEVIR ENDHLYFIFE YMKENLYQLI KERNKLFPES ENSBTAP00000020711/1-628 VKSLKKLNHA NVVKLKEVIR ENDHLYFIFE YMKENLYQLI KERNKLFPES bmy_03093T0/1-590 VKSLKKLNHA NVVKLKEVIR ENDHLYFIFE YMKENLYQLI KERNKLFPES 101 150 BACU015863/1-988 AIRNIMYQIL QGLAFIHKHG FFHRDLKPEN LLCMGPELVK IADFGLAREI ENSP00000349458/1-632 AIRNIMYQIL QGLAFIHKHG FFHRDLKPEN LLCMGPELVK IADFGLAREI ENSTTRP00000014450/1-537 AIRNIMYQIL QGLAFIHKHG FFHRDLKPEN LLCMGPELVK IADFGLAREI ENSBTAP00000020711/1-628 AIRNIMYQIL QGLAFIHKHG FFHRDLKPEN LLCMGPELVK IADFGLAREI bmy_03093T0/1-590 AIRNIMYQIL QGLAFIHKHG FFHRDLKPEN LLCMGPELVK IADFGLAREI 151 200 BACU015863/1-988 RSRPPYTDYV STRWYRAPEV LLRSTNYSSP IDIWAVGCIM AEVYTLRPLF ENSP00000349458/1-632 RSKPPYTDYV STRWYRAPEV LLRSTNYSSP IDVWAVGCIM AEVYTLRPLF ENSTTRP00000014450/1-537 RSRPPYTDYV STRWYRAPEV LLRSTNYSSP IDIWAVGCIM AEVYTLRPLF ENSBTAP00000020711/1-628 RSRPPYTDYV STRWYRAPEV LLRSTSYSSP IDIWAVGCIM AEVYTLRPLF bmy_03093T0/1-590 RSRPPYTDYV STRWYRAPEV LLRSTNYSSP IDIWAVGCIM AEVYTLRPLF 201 250 BACU015863/1-988 PGASEIDTIF KICQVLGTPK KTDWPEGYQL SSAMNFRWPH CVPNNLKTLI ENSP00000349458/1-632 PGASEIDTIF KICQVLGTPK KTDWPEGYQL SSAMNFRWPQ CVPNNLKTLI ENSTTRP00000014450/1-537 PGASEIDTIF KICQVLGTPK KTDWPEGYQL SSTMNFRWPH CVPNNLKTLI ENSBTAP00000020711/1-628 PGASEIDTIF KICQVLGTPK KTDWPEGYQL SNAMNFRWPQ CVPNNLKTLI bmy_03093T0/1-590 PGASEIDTIF KICQVLGTPK KTDWPEGYQL SSAMNFRWPH CVPNNLKTLI 251 300 BACU015863/1-988 PNASSEAVHL LRDMLQWDPK KRPTASQALR YPYFQVGHPL GSTTQSLQDS ENSP00000349458/1-632 PNASSEAVQL LRDMLQWDPK KRPTASQALR YPYFQVGHPL GSTTQNLQDS ENSTTRP00000014450/1-537 PNASSEAVHL LRDMLQWDPK KRPTASQALR YPYFQVGHPL GSTTQSLQDS ENSBTAP00000020711/1-628 PNASSEAVQL LRDMLQWDPK KRPTASQALR YPYFQVGHPL GSTAHSLQES bmy_03093T0/1-590 PNASSEAVHL LRDMLQWDPK KRPTASQALR YPYFQVGHPL GSTTQSLQDS 301 350 BACU015863/1-988 GKPQKDGLEK AAPPPHIKPV PPAQPPTKPH TRISLRQHQA SQPPQHLMYP ENSP00000349458/1-632 EKPQKGILEK AGPPPYIKPV PPAQPPAKPH TRISSRQHQA SQPPLHLTYP ENSTTRP00000014450/1-537 GRPQKDGLEK AAPPPHIKPV PPAQPPTKPH TRISLRQQQA SQPPQHLTYP ENSBTAP00000020711/1-628 GKSQKDVLEK AAAPPHVKPV PPAQPPAKPH TRISSRQHQA GQPPQHLMYP bmy_03093T0/1-590 GKPQKDGLEK AAPPPHIKPV PPAQPPAKPH TRISLRQHQA SQPPQHLMYP 351 400 BACU015863/1-988 YKAEASRTD- --HLPEDKPS PLLLPSLHTK HPQAHALQVG GGMLNSAVSI ENSP00000349458/1-632 YKAEVSRTDH PSHLQEDKPS PLLFPSLHNK HPQS------ ---------- ENSTTRP00000014450/1-537 YKAEASRTD- --HLPEDKPS PLLLPSLHAK HPQA------ ---------- ENSBTAP00000020711/1-628 YKAEAPRTD- --HLPEDKPS PLLLPSLHPK HPQA------ ---------- bmy_03093T0/1-590 YKAEASRTD- --HLPEDKPS PLLLPSLHTK HPQA------ ---------- 401 450 BACU015863/1-988 GEILRSLAHR ERLGPPTGRL AADRLLGALC GSGHSERTQK TCKAMMATKP ENSP00000349458/1-632 -KITAGLEHK NGEIKPKSR- ---RRWGLIS ---------- ---------- ENSTTRP00000014450/1-537 -RILTGLEHK NGEIKPKSR- ---RRWGLVS ---------- ---------- ENSBTAP00000020711/1-628 -KILTGLEHK NGEIKPKSR- ---RRWGLVS ---------- ---------- bmy_03093T0/1-590 -KILTGLEHK NGEIKPKSR- ---RRWGLVS ---------- ---------- 451 500 BACU015863/1-988 KLHYPNGRGR MESVRWVLAA AGVEVPYLYA VSAQICPTTL RLEGNVNGGA ENSP00000349458/1-632 -------RST KDSDDWADLD ---------- -DLDFSPSLS RID------- ENSTTRP00000014450/1-537 -------RLA KDSDGWADLD ---------- -DSDFSPSFT RID------- ENSBTAP00000020711/1-628 -------RST KDSDDWADLD ---------- -DSDFSPSFT RID------- bmy_03093T0/1-590 -------RSA KDSDDWVDLD ---------- -DSDFSPSVT RID------- 501 550 BACU015863/1-988 LSSPTNITDL LQIDMYVEGT LDLLELIIMH PFLKPDDQQK EVVNMAQKAI ENSP00000349458/1-632 LKNKKRQSDD TLCR--FESV LD-------- --LKPSE--- ---------- ENSTTRP00000014450/1-537 LKNKKRQSDE TLCR--FESV LD-------- --LKPSE--- ---------- ENSBTAP00000020711/1-628 LKN-KRQSDE TLCR--FESI LD-------- --LKPSE--- ---------- bmy_03093T0/1-590 LKNKKRQSDE TLCRQVFESV LD-------- --LKPSE--- ---------- 551 600 BACU015863/1-988 IRYFPVFEKV LRGHGQRFLV GNQLSLADII LLQTILALEE KIPNILSAFP ENSP00000349458/1-632 ----PV---- ---------- ---------- ---------- ---------- ENSTTRP00000014450/1-537 ----PV---- ---------- ---------- ---------- ---------- ENSBTAP00000020711/1-628 ----PV---- ---------- ---------- ---------- ---------- bmy_03093T0/1-590 ----PV---- ---------- ---------- ---------- ---------- 601 650 BACU015863/1-988 HLQEFTVKIS NIPTIKKFLE PGSKRKPPPD DIYVRTVYNI FMPKPKPRVM ENSP00000349458/1-632 ---------- ---------- -GTGNSAPTQ TSY------- --QRRDTPTL ENSTTRP00000014450/1-537 ---------- ---------- -GTGNSAPTQ TSY------- --PRCDTPTL ENSBTAP00000020711/1-628 ---------- ---------- -GTGNSAPTQ TSY------- --PRRDTPTL bmy_03093T0/1-590 ---------- ---------- -GTGNSAPTQ TSC------- --PRCDTPTL 651 700 BACU015863/1-988 VAKPKLCYIH GRGRIESICW LLAAADVEVH LVEIDRMVLT QTRAILSYLA ENSP00000349458/1-632 RSAAKQHYLK ---------- ---------- ---------- ---------- ENSTTRP00000014450/1-537 RSAAKQHYLK ---------- ---------- ---------- ---------- ENSBTAP00000020711/1-628 RSAAKQHYLK ---------- ---------- ---------- ---------- bmy_03093T0/1-590 RSAAKQHYLK ---------- ---------- ---------- ---------- 701 750 BACU015863/1-988 AKYNLHGRDL KETLRIHVYS EGVTDLGEMI MLLPVNPPDQ KDVKMTLIRE ENSP00000349458/1-632 -----HSR-- ---------- ---------- ---------- ---------- ENSTTRP00000014450/1-537 -----HSR-- ---------- ---------- ---------- ---------- ENSBTAP00000020711/1-628 -----HSR-- ---------- ---------- ---------- ---------- bmy_03093T0/1-590 -----HSR-- ---------- ---------- ---------- ---------- 751 800 BACU015863/1-988 RTTNRYLPAF EKRNQETAIM AGKPKLHYFN GRGRMEAIRW ILAAAGVEFE ENSP00000349458/1-632 -----YLPGI SIRNG----- ---------- ---------- ILSNPGKEF- ENSTTRP00000014450/1-537 -----YLPGI NIRNG----- ---------- ---------- ILPNPGKDF- ENSBTAP00000020711/1-628 -----YLPGI NIRNG----- ---------- ---------- VLPNPGKDF- bmy_03093T0/1-590 -----YLPGI NIRNG----- ---------- ---------- ILPNPGKDF- 801 850 BACU015863/1-988 EIFIKTPEDL DKLRNEGSLM FQQVPMVEID GMKLVQTRAI LNYIATKYNL ENSP00000349458/1-632 --IPPNPWSS SGLSGKSSGT MSVISKVNSV GSSSTSSSGL TGNYVPSFL- ENSTTRP00000014450/1-537 --IPSNPWSS SGLSGKSSGM VSVVSKINS- ---------- ---------- ENSBTAP00000020711/1-628 --IPPNPWSS SGLSGKSSGT VSVISKITSV GSSSTSSSGL AGNYIPSFL- bmy_03093T0/1-590 --IPSNPWSS SGLSGKSSGM VSVISKINS- ---------- ---------- 851 900 BACU015863/1-988 YGKDMKERAL IDMYTEGVVD LGEMIMHLPL CPPDQKDAKM TQIKESVTNR ENSP00000349458/1-632 ---------- -------KKE IGSAMQRVHL APIPDPSPGY SSLKAMRPHP ENSTTRP00000014450/1-537 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020711/1-628 ---------- -------KKE ISSALQRVHL APIPDPSPGY SSLKAVRPHP bmy_03093T0/1-590 ---------- ---------- ---------- --------GY SSLKTVRPHP 901 950 BACU015863/1-988 YLPAFEKVLK GHGQDYLVGS KLSKADIHLV ELLYYVEELD PSLLANFPLL ENSP00000349458/1-632 GRPFFH---- ---------- ---------- ---------- ---------- ENSTTRP00000014450/1-537 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020711/1-628 GRPFFH---- ---------- ---------- ---------- ---------- bmy_03093T0/1-590 GRPFFH---- ---------- ---------- ---------- ---------- 951 1000 BACU015863/1-988 KALRTRVSNL PAVKKFLQPG SPRKPPMDEK NLEEAKKIFR M ENSP00000349458/1-632 --------TQ PRSTPGLIPR PPAAQPVHGR TDWASKYASR R ENSTTRP00000014450/1-537 ---------- ---------- ---------- ---------- - ENSBTAP00000020711/1-628 --------TQ PRSTPGLLPR PPAAQPVHGR TDWIAKYASR R bmy_03093T0/1-590 --------TQ PRSTPGSLPR PPATQPVHGR TDWAAKYASR R