KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:25 2014 Check: 00 .. Name: ENSP00000355250/1-967 Len: 1120 Check: 4341 Weight: 1.00 Name: ENSTTRP00000011442/1-970 Len: 1120 Check: 9850 Weight: 1.00 Name: ENSBTAP00000020714/1-970 Len: 1120 Check: 3896 Weight: 1.00 Name: bmy_22202T0/1-782 Len: 1120 Check: 1512 Weight: 1.00 Name: BACU006936/1-910 Len: 1120 Check: 9288 Weight: 1.00 // 1 50 ENSP00000355250/1-967 MGPGQPASTC VHLAPRTQLD GRSDPKVLQT QNQLQFNRNV PTHSSNLAIR ENSTTRP00000011442/1-970 MGSGRPASTC VHLASSVQLD GRSDPRKLQT QNQLQFNRNV PTHSSNLAIQ ENSBTAP00000020714/1-970 MGPGRPASTC VHLASGVQLD GRSDPRKLHT QNQLQFNRNV PTHSSNLATQ bmy_22202T0/1-782 ---------- ---------- ---------- ---------- ---------- BACU006936/1-910 MGSGRPASAC VHLASSVQLD GRSDPRKLQT QNQLRFNRNV PTHSSNLAIR 51 100 ENSP00000355250/1-967 YSCPHAIRIE KLKHSYNESY HCKDADCRVG PDLGSSVSFS VISQERLSYA ENSTTRP00000011442/1-970 YSCPHGIRIE KLKHSYNESY HCRDSGFRDG PDLGSSVSFS VISEERLSYA ENSBTAP00000020714/1-970 YSCPHGIKIE KLKHSYNESY HCRDLDFRDG PGLGSSVSFS VVSEERLSYA bmy_22202T0/1-782 ---------- ---------- ---------- ---------- ---------- BACU006936/1-910 YSCPHGIRIE KLKHSYNESY HCRDSGFRDG PDLSSSVSFS VISEERLSYA 101 150 ENSP00000355250/1-967 VHLARRDVKR RQFEKHIKEH HLRSQPQSSQ KCGHTKYKIP DHRVERKESK ENSTTRP00000011442/1-970 VHLAKRDVKR RQLEEHIKEH HLRSQPQILQ KCGQSNHKIS DHRVERKESK ENSBTAP00000020714/1-970 VHLAKRDVKR RQLEEHRKEH HLRSPPHVFR NCGHSQHKTS DLGVEREESR bmy_22202T0/1-782 ---------- ---------- ---------- ---------- ---------- BACU006936/1-910 VHLAKRDIKR RQLEEHIKEH HLRSQPQIFQ KCGHSNHKIS DHRVERKESK 151 200 ENSP00000355250/1-967 SQAACQCSHQ PSKVEISSSG AKVYLYSSHP GQSDLTVPNS PPTHDPGLQP ENSTTRP00000011442/1-970 SREVCHGSNQ PSKVEISSSG AKVYLYTSHP GQSDLTMPNS PPTRDPGLQP ENSBTAP00000020714/1-970 RREACHGSHQ PSKVEISSSG AKVYLYTSHP GQSGLPVPNS PPTHDPGLQP bmy_22202T0/1-782 ---------- ---------- ---------- ---------- ---------- BACU006936/1-910 SREVCHGSRQ PSKVEISSSG AKVYLYTSHP GQSDLTMPNS PPTRDPGLQP 201 250 ENSP00000355250/1-967 HPRIGDHKNI SEQKSLLEVQ RLQKELSSCI HKIEEVTKKD RLEEALDPDE ENSTTRP00000011442/1-970 HARIGDHKSL CGHKSLLEVQ RLQKELSSCI HKIEELTKKX XXXXXXXXXX ENSBTAP00000020714/1-970 HSGIDDHKSL CEHKCLLEVQ RLQKELSSCI RKIEEVAKRD RVEEALDPDE bmy_22202T0/1-782 ---------- ---------- ---------- ---------- -MEEALDPDE BACU006936/1-910 HARIGDHKSL CGHKSLLEVQ RLQKELSSCI HKIEELTKKD RMEEALDPDE 251 300 ENSP00000355250/1-967 ERRIRIRRQE QAARSARMLY VLQQQVKEIQ EELDKLSPHK IKHTKKSWAM ENSTTRP00000011442/1-970 XXXXXXXXXX XXXXXXXXXX XXXXXVKEIQ EELDKLSPHK IKHTKKSWAV ENSBTAP00000020714/1-970 ERRIRVRRQE QAVRSARTLY VLQQQVKEIQ EELDKLSPHK IKHTKKSWAV bmy_22202T0/1-782 ERRIRVRRQE QAVRSARMLY VLQQQVKEIQ EELDKLSPHK IKHTKKSWAV BACU006936/1-910 ERRIRVRRQE QAVRSARMLY VLRQQVKEIQ EELDKLSPHK IKHTKKSWAV 301 350 ENSP00000355250/1-967 SKLAAAHRGA IRALQMFVTQ FTDRGEHPLP ARCKELGSLI RQLSLCSVKL ENSTTRP00000011442/1-970 SRLAAAHRGA IRALQMFVTQ FTDRVEHAVP IWCKELGSLI RQLSLCSAKL ENSBTAP00000020714/1-970 SRLAAAHRGA IRALQTFVTQ FTAGGEYPVP TWCKELGSLI RQLSLCSAKL bmy_22202T0/1-782 SRLAAAHRGA IRALQMFVTQ FTDRVEHPVP TWCKELGSLI RQLSLCSAKL BACU006936/1-910 SRLAAAHRGA IRALQMFVTQ FTDRVEHPVP TWCKELGSLI RQLSLCSAKL 351 400 ENSP00000355250/1-967 DADPSVPDVV IDILQQIEAL ESLLEKKLSP KKVKKCFSEI RSRFPIGSQK ENSTTRP00000011442/1-970 EANSSVPVVV IDILQQTEAL ESLLEKTLSP KKAKKCFSEI QSRFPIGSQR ENSBTAP00000020714/1-970 EAESSVPDVV IDILQQIEAL ESLLEKKLSP KKAKKCFGEI RSRFPIGSQR bmy_22202T0/1-782 EANSSVPDVV IDILQQTEAL ESLLEKTLSP KKAKKCFSEI RSRFPIGSQR BACU006936/1-910 EANSSVPDVV IDILQQTEAL ESLLEKTLSP KKAKKCFSEI RSRFPIGSQR 401 450 ENSP00000355250/1-967 ALERWPSTSP KGERRPLTAK DTFPQETSRP SVAKQLLADK YQPDTELPET ENSTTRP00000011442/1-970 ALERWRSTSP KSERRPFVAK EVFPQETRGP SVAKKLLADK YQPDIELPVT ENSBTAP00000020714/1-970 ALERWRNTSP KSERKPFVAK EIFPQETRQP SVAKKLLADK YQPDTELPVT bmy_22202T0/1-782 ALERWRSTSQ KSERRPFVAK EIFPQETRGP SVAKKLLADK YQPDTELPVT BACU006936/1-910 ALERWRSTSP KSERRPFVAK EIFPQETRGP SVAKKLLADK YQPDTELPVT 451 500 ENSP00000355250/1-967 QRLQSELDVL DADIVLEEGP FILDQSASFK DEVLAVAKTK AGKKKPVTEN ENSTTRP00000011442/1-970 QRLENELDVL DADILPEEAP SVVDQNANFK EEALALAKTR AGKKKLVTEN ENSBTAP00000020714/1-970 QRLENELDGL EADILQENAP SILDQNAGFK EEALALAKIK AGRKKLVTEN bmy_22202T0/1-782 QGLENELDVL DADILPEEAP SIVDQNANFR EEALALAKTR AGKKKL---- BACU006936/1-910 QGLENELDVL DADILPEEAP SIVDQNANFK EEALALAKTR AGKKKLVTEN 501 550 ENSP00000355250/1-967 V-PFRKKDTL APAR-QQGLR KAERGRQSQP HSKSRVQQTT VSSRLKMNRQ ENSTTRP00000011442/1-970 VPPFRKKDTV APARLQQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020714/1-970 VPPSRKKDTL APARPQQGLH KAEKSRLIPS YSKSRLQRTT VSSRLKMNQQ bmy_22202T0/1-782 ---------- -------GLH KAGKSRPPQC YSKGRLQRTT VSSRLKMNQQ BACU006936/1-910 VPPFRKKDTL APARLQQGLH KAGKSRPPQC YSKGRLQRTT VSSRLKMNQQ 551 600 ENSP00000355250/1-967 PVKDRKAPWI PPNPTSPPAS PKCAAWLKVK TSPRDATKE- PLQQEDPQEE ENSTTRP00000011442/1-970 XXXXXXXXXX XXXXXXXXXX XXXAAWLKVK SSPKDAAKEQ SLQKEDTQGE ENSBTAP00000020714/1-970 PVKDSRAPWI PPNPTSPPAS PKCAAWLKAK SSPKDTTKEQ SLQQEDTQED bmy_22202T0/1-782 PVKNHRAPWI PPNPTSPLAS PKCAAWLKVK SSPKDAAKEQ SLQQEDTQEE BACU006936/1-910 PVKNHRAPWI PPNPTSPLAS PKCAAWLKVK SSPKDAAKEQ SLQQEDTQEE 601 650 ENSP00000355250/1-967 SHLTGAVEHE AARLAWLDAE TSKRLKELEE LKAKEIDSMQ KQRLDWLDAE ENSTTRP00000011442/1-970 SQLRGAVEHE AVRLTWLDAE ISKRLKELEE LKAEEMDKMQ KQRLSWLDAE ENSBTAP00000020714/1-970 SWLRGAVEHE AVRLAWLDAE TSKRLKELEE LKAEQMDKMQ KQRLHWLDAE bmy_22202T0/1-782 SQLRGAVEHE AARLTWLDAE TSKRLKELEE LKAEEMDRMQ KQ-------- BACU006936/1-910 SQLRGAVEHE AV-------- ---------- ---------- ---------- 651 700 ENSP00000355250/1-967 TSRRTKELNE LKAEEMYRLQ QLSVSATHLA DKVEEAVLDR LKPLLVKAQR ENSTTRP00000011442/1-970 TSRRTKELNE LKTEEMDRLQ KLSVSATQLA DKVEKAVLER LKPLLVKAQR ENSBTAP00000020714/1-970 TSRRTKELNE LKMEERDSCQ KLSVSTTQLA DKVEKAVLER LKPLLAKAQR bmy_22202T0/1-782 ---------- ---------- --SVSATQLA DKVEKAVLER LKPLLVKAQR BACU006936/1-910 ---------- ---------- --SVSATHLA DKVEKAVLER LKPLLVKAQR 701 750 ENSP00000355250/1-967 VNSTTEANIH LKDGSSVNTA KAQPAQEVAA VDFESNNIRQ LDDFLEDCAS ENSTTRP00000011442/1-970 VNSSVEADTR LKDRLSVIAA TAQPAEKATA VDCESSSIQQ LDDFLEDAAH ENSBTAP00000020714/1-970 VNSSLEVDTH LKDQPSEIAT TAQPAEEATA VDGESSNIHQ LDGFLENTTH bmy_22202T0/1-782 VNSSLEADAH LKDRLSVIAA TARPAEKATA IDCESSSIHQ LDDFLEDAAH BACU006936/1-910 VNSSLEADAH LKDRLSVIAA TARPAEKATA IDCESSSIHQ LDDFLEDAAH 751 800 ENSP00000355250/1-967 ELWAVTHAKI LGSETLATVE DSKDSPDLEI MMRRMEEMEK YQESVRQRYN ENSTTRP00000011442/1-970 ELWAVTHSKI SEPEALATWG GSNDSPCLEA MMLRMEEMEK YQETVRQRYN ENSBTAP00000020714/1-970 EHWPMTHSKI WESDALATLG DGKDSPYLET MMLRMEEMEK YQETVRQRYN bmy_22202T0/1-782 ELWAMTHSKI SEPEALATWG DSEDSP---- ---------- ---------- BACU006936/1-910 ELWAVTHSKI SEPEALATWG DSEDSPRLEA MMLRMEEMEK YQETVRQRYN 801 850 ENSP00000355250/1-967 KIAYADPRLW MQEENNDQKI SAISEKPLSP HPIRITKTVD RKDPAVNIML ENSTTRP00000011442/1-970 KIVFTDPHLW MQEEKNDQKI PAVSERRLSP HPIRITKTAA RKDPDVNIVL ENSBTAP00000020714/1-970 KIVYTDPHFW MQEEKNDHKF PAVSERPLSP HPIRITKTAA RKDPDVNIVL bmy_22202T0/1-782 ---------- ---------- --LSERCLSP HPIRITKTAA RKDPDVNIVL BACU006936/1-910 KIVYTDPHLW MQEEKNDQKI PAVSERCLSP HPIRITKTAA RKDPDVNIVL 851 900 ENSP00000355250/1-967 ERPCNGNSLD ESVGTEEGSE KREAPLLSLA EDSQQKEGRA PLFVPPGMQH ENSTTRP00000011442/1-970 ERPCNGTSLD ESVGTEERPE KRENPLLSLS EDAQQKEGRA ALFVPRGMRR ENSBTAP00000020714/1-970 EGPCNGASLD ESVVTEERSE KREAPLPSLL EDAQQTEGRA ALFVPLAMRR bmy_22202T0/1-782 ERPCNGTSLD ESVGTEERPE KRETPLLSLS EDAQQKKGRA ALFVPWGMRH BACU006936/1-910 ERPCNGTSLD ESVGTEERPE KRETPLLSLS EGAQQRKGRA AIFVPRGMRH 901 950 ENSP00000355250/1-967 SIGDYCSRFE QYLRIISHEA VGSFNPWLIA E--------- ---------- ENSTTRP00000011442/1-970 SIGDYCRRFE QYLRVTAHEA VGSFNPWLIA E--------- ---------- ENSBTAP00000020714/1-970 SIGDYCRRFE HYLRVIAHEA VGSFNPWLIA E--------- ---------- bmy_22202T0/1-782 SIGDYCRRFE QYLRVIAHEA VGSFNPWLIA ERSVEGLCFV EELGATCQLT BACU006936/1-910 SIGDYCRRFE QYLRVIAHEA VGAFNPWLIA E--------- ---------- 951 1000 ENSP00000355250/1-967 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011442/1-970 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020714/1-970 ---------- ---------- ---------- ---------- ---------- bmy_22202T0/1-782 ERLEKGLARV SGRAFVPWSS SGCFGASEQA FSAKCLSSGR GDWKTAWLMA BACU006936/1-910 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000355250/1-967 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011442/1-970 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020714/1-970 ---------- ---------- ---------- ---------- ---------- bmy_22202T0/1-782 SKGAFCRLPS LGPCHQRTQI ITGQDTVMIM KSSRSGQTYT RSSRPTDFAT BACU006936/1-910 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000355250/1-967 ---------- ---------- ---------- -SFSEELVDE ALGAVAAELQ ENSTTRP00000011442/1-970 ---------- ---------- ---------- -XXXXXXXXX XXXXXXXXXX ENSBTAP00000020714/1-970 ---------- ---------- ---------- -SFSEELVDE ALGAVAAELQ bmy_22202T0/1-782 LNLLLLAVTS PEKGSFVQSE NSPTATKYLK NGFAEELVDE ALGAVAAELQ BACU006936/1-910 ---------- ---------- ---------- -SFAEELVDE ALGAVAAELQ 1101 1150 ENSP00000355250/1-967 DMCEDYAEAV FTSEFLEAAT ENSTTRP00000011442/1-970 XXXXXXXXXX XXXXXXEAAT ENSBTAP00000020714/1-970 DMCEDYAEAV FTSEFLEPAT bmy_22202T0/1-782 DVCEDYAEAV FTSEFLEAAT BACU006936/1-910 DVCEDYAEAV FTSEFLEAAT