KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:27 2014 Check: 00 .. Name: ENSP00000289575/1-709 Len: 856 Check: 8897 Weight: 1.00 Name: ENSBTAP00000020716/1-708 Len: 856 Check: 5082 Weight: 1.00 Name: BACU004996/1-856 Len: 856 Check: 2981 Weight: 1.00 Name: ENSTTRP00000005526/1-710 Len: 856 Check: 2445 Weight: 1.00 Name: bmy_01317T0/1-370 Len: 856 Check: 9402 Weight: 1.00 // 1 50 ENSP00000289575/1-709 MGPRIGPAGE VPQVPDKETK ATMGTENTPG GKASPDPQDV RPSVFHNIKL ENSBTAP00000020716/1-708 MAPRIGPVGE ELQVPDKDAK AMVGTEDTPG SKASPNPQKL RPSVFHSIKF BACU004996/1-856 MGPRIGPIGE ELQVPDKDTK AMVGTEDTPG GKARPNPEDL RPSVFHSIKF ENSTTRP00000005526/1-710 MGPRIGPIGE ELQVPDKDTK AMVGTEDTPG GKARPNPQDL RPSVFHSIKF bmy_01317T0/1-370 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000289575/1-709 FVLCHSLLQL AQLMISGYLK SSISTVEKRF GLSSQTSGLL ASFNEVGNTA ENSBTAP00000020716/1-708 FVLCHSLLQL AQLMISGYLK SSISTVEKRF GLSSQTSGLL AAFNEVGNTA BACU004996/1-856 FVLCHSLLQL AQLMISGYLK SSISTVEKRF GLSSQTSGLL AAFNEVGNTA ENSTTRP00000005526/1-710 FVLCHSLLQL AQLMISGYLK SSISTVEKRF GLSSQTSGLL AAFNEXXXXX bmy_01317T0/1-370 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000289575/1-709 LIVFVSYFGS RVHRPRMIGY GAILVALAGL LMTLPHFISE PYRYDNTSPE ENSBTAP00000020716/1-708 LIVFVSYFGS RVHRPRLIGC GAILVTLAGI LMTVPHFISE PYRYDRTSP- BACU004996/1-856 LIVFVSYFGS RVHRPRLIGY GAILVTLAGV LMTVPHFISE PYHYDHTSPA ENSTTRP00000005526/1-710 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01317T0/1-370 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000289575/1-709 DMPQDFKASL CLPTTSAPAS A--PSNGNCS SYTETQHLSV VGIMFVAQTL ENSBTAP00000020716/1-708 DMPQDFEASL CLPSTKALAS A--SSNSSCS SYTEARHLAV VGIMFTAQTL BACU004996/1-856 DMPQDFEASL CLPTTEAPAS APSPSNSSCS GYTEVQHLAV VGIMFTAQTL ENSTTRP00000005526/1-710 DMPQDFEASL CVPTTEAPTS APTPSNSSCS GYTEVQHLAV VGIMFTAQTL bmy_01317T0/1-370 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000289575/1-709 LGVGGVPIQP FGISYIDDFA HNSNSPLYLG ILFAVTMMGP GLAFGLGSLM ENSBTAP00000020716/1-708 LGVGGVPIQP FGISYIDDFS HNSNSPLYLG ILFAVTMMGP GMAYGLGSLM BACU004996/1-856 LGVGGVPIQP FGISYIDDFA HHSNSPLYLG ILFAVTMMGP GMAYGLGSLM ENSTTRP00000005526/1-710 LGVGGVPIQP FGISYIDDFA HNSNSPLYLG ILFAVTMMGP GXXXXXXXXX bmy_01317T0/1-370 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000289575/1-709 LRLYVDINQM PEGGISLTIK DPRWVGAWWL GFLIAAGAVA LAAIPYFFFP ENSBTAP00000020716/1-708 LRLYVDIDRM PEGGINLTSK DPRWVGAWWL GFLISAGAVA LAAIPYFFFP BACU004996/1-856 LRLYVDIDRM PEGGISLTSK DPRWVGAWWL GFLISAGTVA VAAIPYFFFP ENSTTRP00000005526/1-710 XXXXXXXXXX XXXGISLTSK DPRWVGAWWL GFLISAGTVA LAATPYFFFP bmy_01317T0/1-370 ---------- -MPGIQLTA- ---------L GHV------- ---------- 301 350 ENSP00000289575/1-709 KEMPKEKREL QFRRKVLAVT DSPARKGKDS PSKQSPGEST KKQDGLVQIA ENSBTAP00000020716/1-708 KEMPKEKQEL RFRRKGLAVS DPPVSKGEDS SSEQSPADSP EKKDNLAQIA BACU004996/1-856 KEMPKEKREL RFRRKVLAVS DPPVSKGEDA SSEQSPGESP EKKDGLAQIA ENSTTRP00000005526/1-710 KEMPKEKREL RFRRKVLAVS DPPVSKGEDA SSERSPGESP EKKDGLAQIA bmy_01317T0/1-370 ---------- ---------- ---SSQGEDA SSERSPGESP EKKDGLAQIA 351 400 ENSP00000289575/1-709 PNLTVIQFIK VFPRVLLQTL RHPIFLLVVL SQVCLSSMAA GMAIFLPKFL ENSBTAP00000020716/1-708 PDLTVIQFIK VFPRVLLRTL RHPIFLLVVL SQVCMSSMAA GMATFLPKFL BACU004996/1-856 PDLTVIQFIK VFPRVMLRTL RHPIFLLVVL SQVCMSSMVA GMATFLPKFL ENSTTRP00000005526/1-710 PDLTVIQFIK XXXXXXXXXX RHPIFLLVVL S-VCMSSMVA GMATFLPKFL bmy_01317T0/1-370 PDLTVIQFIK ---------- ---------- ---------- GMATFLPKFL 401 450 ENSP00000289575/1-709 ERQFSITASY ANLLIGCLSF PSVIVGIVVG GVLVKRLHLG PVGCGALCLL ENSBTAP00000020716/1-708 ERQFSVTASY ANLLIGCLTI PLAIVGIVVG GILVKRLRLG PVHCGTLCLL BACU004996/1-856 ERQFSVTASY ANLLIGCLTI PLAIVGIVVG GILVKRLRLG PMHCGTLCLL ENSTTRP00000005526/1-710 ERQFSVTASY ANLLIGCLTI PLAIVGIVVG GILVKRLRLG PMHCGTLCLL bmy_01317T0/1-370 ERQFSVTASY ANLLIGCLTI PLAIVGIVVG GILVKRLRLG PMHCGTLCLL 451 500 ENSP00000289575/1-709 GMLLCLFFSL PLFFIGCSSH QIAGITHQTS AHPGLELSPS CMEACSCPLD ENSBTAP00000020716/1-708 SALCCLVLST PLFFMGCSSH QIAGISHQPG AQPGLELFPG CMESCSCPSD BACU004996/1-856 GALFCLLLST PLFFMGCSTH QIAGINHQPG GQPGLELFPG CTEPCSCPPD ENSTTRP00000005526/1-710 GALFCLLLST PLFFMGCSTH QIAGINHQPG AQPGLELFPG CTEPCSCPSD bmy_01317T0/1-370 GALFCLLLST PLFFMGCSTH QIAGINHQPG AQPGLELFPG CTEPCSCPSD 501 550 ENSP00000289575/1-709 GFNPVCDPST RVEYITPCHA GCSSWVVQDA LDNSQVFYTN CSCVVEGNPV ENSBTAP00000020716/1-708 DFNPVCDSSS RVEYITPCHA GCRSRVVQEA PDKSQVFYTN CSCVAGGGPV BACU004996/1-856 DFNPVCDSSA RVEYLTPCHA GCASRVVHEA PDKSQVFYTN CSCVVGGGPV ENSTTRP00000005526/1-710 DFNPVCDSSA RVEYLTPCHA GCRSRVVHEA SDKGQVFYTN CSCVVGGGPV bmy_01317T0/1-370 DFNPVCDSSA RVEYLTPCHA GCTSRVVHEA PDKSQVFYTN CSCVVGGGPV 551 600 ENSP00000289575/1-709 LAGSCDSTCS HLVVPFLLLV SLGSALACLT HTPSFMLILR GVKKEDKTLA ENSBTAP00000020716/1-708 PAGSCDSACG HLVLPFMILV SLGAALASVT HTPSFMLILR GVKKEDKTLA BACU004996/1-856 PAGSCDSACS HLVLPFMILV SLGAALASVT HTPSFMLILR GVKKEDKTLA ENSTTRP00000005526/1-710 PAGSCDSACS HLVLPFMILV SLAAALASVT HTPSFMLILR GVKKEDKTLA bmy_01317T0/1-370 PAGSCDSACG HLVLPFMILV SLGAALASVT HTPSFMLILR GVKKEDKTLA 601 650 ENSP00000289575/1-709 VGIQFMFLRI LAWMPSPVIH GSAIDTTCVH WALSCGRRAV CRYYNNDLLR ENSBTAP00000020716/1-708 VGIQFMLMRV LAWMPSPVIH GSAIDTTCVY WAHSCGRQAV CHYYDHDLLR BACU004996/1-856 VGIQFMLLRV LAWMPSPVIH GSAIDTTCVY WAQSCGRRAV CHYYDHDLLR ENSTTRP00000005526/1-710 VGIQFMLLRV LAWMPSPVIH GSAIDTTCVY WAQSCGRRAV CHYYDHDLLR bmy_01317T0/1-370 VGIQFMLLRV LAWMPSPVIH GSAIDTTCVY WAQSCGRRAV CHYYDHDLLR 651 700 ENSP00000289575/1-709 NRFIGLQFFF KTGSVICFAL VLAVLRQQDK EARTKESRSS PAVEQQLLVS ENSBTAP00000020716/1-708 NRFIGLQFFF KTGSLACFAL ILAILRQQDK EERTKATIPN PGLQQQLLAS BACU004996/1-856 NRFIGLQFFF KTGSLACFAL ILAILRQQDK EEGTKATIPN SGLQQQLLAS ENSTTRP00000005526/1-710 NRFIGLQFFF KTGSLACFAL ILAILRQQDK EEGTKATIPN PGLQQQLLAS bmy_01317T0/1-370 NRFIGLQFFF KTGSLACFAL ILAILRQQDK EEGTKATIPN PGLQQQLLAS 701 750 ENSP00000289575/1-709 GPGKKPEDSR V--------- ---------- ---------- ---------- ENSBTAP00000020716/1-708 EAKKEPEESR V--------- ---------- ---------- ---------- BACU004996/1-856 GAKKEPEESR VTQHRLPYLL PSSPIMSEER EPAFYSALNH SEHSTQDLKC ENSTTRP00000005526/1-710 GAKKEPEESR V--------- ---------- ---------- ---------- bmy_01317T0/1-370 GTKKEPEESR V--------- ---------- ---------- ---------- 751 800 ENSP00000289575/1-709 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020716/1-708 ---------- ---------- ---------- ---------- ---------- BACU004996/1-856 NRISAGLRCA EGDADGRGEE VELAGPELEA SYVFFGLVLA LIGLIFLMVL ENSTTRP00000005526/1-710 ---------- ---------- ---------- ---------- ---------- bmy_01317T0/1-370 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000289575/1-709 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020716/1-708 ---------- ---------- ---------- ---------- ---------- BACU004996/1-856 YLNRRGIQRW MRNLREACRD QMEGYHYRYE QDADPRRAPA PAAPAGSGAT ENSTTRP00000005526/1-710 ---------- ---------- ---------- ---------- ---------- bmy_01317T0/1-370 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000289575/1-709 ------ ENSBTAP00000020716/1-708 ------ BACU004996/1-856 SPGSGL ENSTTRP00000005526/1-710 ------ bmy_01317T0/1-370 ------